Wall clock time and date at job start Mon Mar 30 2020 03:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.29009 * 126.55057 * 2 1 4 4 N 1.28647 * 109.15782 * 180.27102 * 3 2 1 5 5 N 1.28811 * 109.83125 * 359.75873 * 4 3 2 6 6 C 1.32217 * 107.86775 * 359.97438 * 5 4 3 7 7 C 1.47585 * 126.87797 * 179.97438 * 6 5 4 8 8 C 1.40082 * 119.88982 * 159.38981 * 7 6 5 9 9 C 1.36213 * 120.10550 * 180.02562 * 8 7 6 10 10 C 1.40964 * 119.88946 * 359.97172 * 9 8 7 11 11 C 1.40979 * 120.10106 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00181 * 340.59563 * 11 10 9 13 13 C 1.40062 * 119.99613 * 160.87582 * 11 10 9 14 14 N 1.30750 * 120.00525 * 323.90195 * 13 11 10 15 15 Si 1.86807 * 119.99797 * 143.90016 * 13 11 10 16 16 H 1.48506 * 109.46777 * 94.98598 * 15 13 11 17 17 H 1.48493 * 109.47376 * 214.98318 * 15 13 11 18 18 H 1.48495 * 109.47267 * 334.99066 * 15 13 11 19 19 C 1.40961 * 119.79289 * 0.27904 * 10 9 8 20 20 C 1.36211 * 119.88744 * 359.43565 * 19 10 9 21 21 H 1.09005 * 109.46836 * 265.22586 * 1 2 3 22 22 H 1.08995 * 109.46988 * 25.22043 * 1 2 3 23 23 H 1.08995 * 109.47443 * 145.22277 * 1 2 3 24 24 H 1.07994 * 119.94838 * 359.97438 * 8 7 6 25 25 H 1.07999 * 120.05372 * 179.97438 * 9 8 7 26 26 H 0.97004 * 120.00659 * 180.02562 * 14 13 11 27 27 H 1.07996 * 120.05518 * 179.70881 * 19 10 9 28 28 H 1.07992 * 119.94160 * 180.27295 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2332 1.0364 0.0000 4 7 3.4609 0.6518 -0.0057 5 7 3.5157 -0.6351 -0.0045 6 6 2.2757 -1.0940 0.0029 7 6 1.8548 -2.5085 0.0064 8 6 0.5686 -2.8530 0.4415 9 6 0.1757 -4.1573 0.4471 10 6 1.0656 -5.1608 0.0135 11 6 0.6635 -6.5120 0.0169 12 1 -0.1737 -6.8248 0.6233 13 6 1.3533 -7.4499 -0.7617 14 7 1.8252 -7.1077 -1.9321 15 14 1.5993 -9.1899 -0.1279 16 1 0.5246 -10.0666 -0.6589 17 1 2.9201 -9.6984 -0.5774 18 1 1.5485 -9.1880 1.3561 19 6 2.3607 -4.8097 -0.4184 20 6 2.7424 -3.5022 -0.4258 21 1 -0.3633 -0.0855 1.0242 22 1 -0.3633 0.9297 -0.4379 23 1 -0.3634 -0.8440 -0.5861 24 1 -0.1123 -2.0835 0.7738 25 1 -0.8160 -4.4220 0.7831 26 1 2.3027 -7.7573 -2.4715 27 1 3.0475 -5.5756 -0.7470 28 1 3.7329 -3.2317 -0.7607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214968864.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:20 Heat of formation + Delta-G solvation = 110.320539 kcal Electronic energy + Delta-G solvation = -14986.420588 eV Core-core repulsion = 12424.833332 eV Total energy + Delta-G solvation = -2561.587257 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.78752 -39.52767 -36.56178 -35.90883 -33.81936 -31.64346 -31.25052 -29.32606 -27.51425 -24.53401 -23.94469 -22.62495 -22.08642 -19.44649 -18.34031 -18.01909 -17.37666 -16.98908 -15.92998 -15.48956 -14.78498 -14.52962 -14.36676 -14.10904 -13.93283 -13.49949 -13.19558 -13.06900 -12.97968 -12.67462 -12.28573 -12.08434 -11.75842 -11.71810 -11.39084 -11.24917 -10.87561 -9.59226 -9.41905 -8.95995 -6.41546 0.00347 0.83130 1.15739 1.26421 1.30374 1.41564 1.54923 1.71211 2.12633 2.53251 3.39029 3.44297 3.63869 4.10195 4.24314 4.29623 4.43261 4.53483 4.60005 4.88406 4.94143 5.00565 5.17175 5.22404 5.40118 5.56471 5.82774 5.96404 6.04997 6.14802 6.49144 6.71893 6.86712 7.72211 7.97666 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.056254 B = 0.006132 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.621364 B = 4565.225530 C = 4883.483095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.322 5.322 3 N -0.120 5.120 4 N -0.112 5.112 5 N -0.363 5.363 6 C 0.277 3.723 7 C -0.218 4.218 8 C -0.042 4.042 9 C -0.242 4.242 10 C 0.099 3.901 11 C -0.461 4.461 12 H 0.099 0.901 13 C 0.051 3.949 14 N -0.768 5.768 15 Si 0.974 3.026 16 H -0.254 1.254 17 H -0.266 1.266 18 H -0.254 1.254 19 C -0.214 4.214 20 C -0.040 4.040 21 H 0.118 0.882 22 H 0.127 0.873 23 H 0.114 0.886 24 H 0.138 0.862 25 H 0.121 0.879 26 H 0.302 0.698 27 H 0.095 0.905 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 1.321 2.241 7.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.124 5.124 3 N -0.106 5.106 4 N -0.106 5.106 5 N -0.215 5.215 6 C 0.007 3.993 7 C -0.225 4.225 8 C -0.062 4.062 9 C -0.262 4.262 10 C 0.096 3.904 11 C -0.486 4.486 12 H 0.117 0.883 13 C -0.174 4.174 14 N -0.389 5.389 15 Si 0.793 3.207 16 H -0.178 1.178 17 H -0.191 1.191 18 H -0.178 1.178 19 C -0.233 4.233 20 C -0.060 4.060 21 H 0.136 0.864 22 H 0.145 0.855 23 H 0.132 0.868 24 H 0.156 0.844 25 H 0.139 0.861 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.510 2.414 1.982 6.334 hybrid contribution -0.256 -1.233 -0.117 1.264 sum -5.766 1.181 1.866 6.175 Atomic orbital electron populations 1.22948 0.69256 1.07934 1.07030 1.48792 1.11559 1.02877 1.49162 1.78450 0.97829 1.13540 1.20795 1.78247 1.10933 1.05027 1.16431 1.75292 1.19124 1.02725 1.24336 1.24404 0.85433 0.92086 0.97392 1.16806 0.98400 0.84231 1.23054 1.20765 0.93072 0.96817 0.95551 1.20797 0.99913 0.92258 1.13221 1.18043 0.91088 0.93633 0.87682 1.20131 1.14024 0.92784 1.21642 0.88321 1.26975 0.91659 1.06025 0.92699 1.69882 1.21611 1.39847 1.07529 0.85312 0.79255 0.75607 0.80557 1.17825 1.19080 1.17761 1.20658 0.97315 0.94573 1.10782 1.20395 0.97129 0.92666 0.95818 0.86416 0.85465 0.86762 0.84398 0.86135 0.88638 0.88728 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 9.63 127.77 1.23 2.59 15 2 N -0.32 -10.87 3.79 -360.92 -1.37 -12.24 15 3 N -0.12 -4.53 13.27 37.02 0.49 -4.04 15 4 N -0.11 -4.87 13.40 37.02 0.50 -4.38 15 5 N -0.36 -16.51 12.24 -51.36 -0.63 -17.14 15 6 C 0.28 11.35 7.75 136.32 1.06 12.41 15 7 C -0.22 -9.21 5.88 -19.92 -0.12 -9.33 15 8 C -0.04 -1.56 8.56 22.25 0.19 -1.37 15 9 C -0.24 -9.91 9.73 22.47 0.22 -9.69 15 10 C 0.10 4.68 5.60 -21.27 -0.12 4.56 15 11 C -0.46 -21.11 8.92 23.38 0.21 -20.91 15 12 H 0.10 4.22 8.04 -2.91 -0.02 4.20 15 13 C 0.05 2.22 4.69 85.30 0.40 2.62 15 14 N -0.77 -34.98 11.87 21.85 0.26 -34.72 15 15 Si 0.97 32.22 29.68 68.60 2.04 34.25 15 16 H -0.25 -7.92 7.11 99.48 0.71 -7.21 15 17 H -0.27 -8.61 7.11 99.48 0.71 -7.91 15 18 H -0.25 -8.41 7.11 99.48 0.71 -7.70 15 19 C -0.21 -10.39 8.77 22.46 0.20 -10.19 15 20 C -0.04 -1.84 9.64 22.24 0.21 -1.62 15 21 H 0.12 1.77 7.72 -2.38 -0.02 1.76 15 22 H 0.13 1.85 8.14 -2.39 -0.02 1.83 15 23 H 0.11 2.21 6.55 -2.39 -0.02 2.20 15 24 H 0.14 3.78 5.09 -2.91 -0.01 3.77 15 25 H 0.12 4.35 8.06 -2.91 -0.02 4.33 15 26 H 0.30 12.18 8.29 -92.71 -0.77 11.41 15 27 H 0.09 4.75 6.47 -2.91 -0.02 4.73 15 28 H 0.10 4.41 7.99 -2.91 -0.02 4.38 15 Total: -1.00 -59.36 251.11 5.96 -53.40 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.19 Total: 15.79 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 3.48 Total: -30.92 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -0.75 Total: -72.52 kcal Atomic # 14 Polarization: 32.22 SS G_CDS: 2.04 Total: 34.25 kcal Total: -59.36 5.96 -53.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214968864.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.721 kcal (2) G-P(sol) polarization free energy of solvation -59.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds