Wall clock time and date at job start Mon Mar 30 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99981 * 2 1 4 4 H 1.48507 * 109.46958 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46907 * 299.99670 * 3 2 1 6 6 H 1.48495 * 109.47084 * 60.00040 * 3 2 1 7 7 C 1.38950 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99751 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00646 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00551 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00008 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00092 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47319 * 180.02562 * 12 10 9 14 14 C 1.48569 * 110.99553 * 305.41731 * 13 12 10 15 15 C 1.54377 * 104.59247 * 200.95950 * 14 13 12 16 16 H 1.09003 * 110.32570 * 142.74936 * 15 14 13 17 17 O 1.42902 * 110.32539 * 264.95974 * 15 14 13 18 18 C 1.54266 * 105.06190 * 23.85295 * 15 14 13 19 19 H 1.08997 * 110.32179 * 241.10098 * 18 15 14 20 20 O 1.42899 * 110.32327 * 118.99672 * 18 15 14 21 21 C 1.48562 * 111.00084 * 190.00152 * 13 12 10 22 22 H 0.96999 * 120.00042 * 0.02562 * 1 2 3 23 23 H 0.97010 * 119.99151 * 0.02562 * 9 7 2 24 24 H 1.09004 * 109.47209 * 59.99806 * 12 10 9 25 25 H 1.09002 * 109.46944 * 300.00518 * 12 10 9 26 26 H 1.08996 * 110.41173 * 82.18280 * 14 13 12 27 27 H 1.09002 * 110.40866 * 319.73563 * 14 13 12 28 28 H 0.96701 * 113.99885 * 295.63531 * 17 15 14 29 29 H 0.96699 * 114.00092 * 179.97438 * 20 18 15 30 30 H 1.08992 * 110.41274 * 40.26003 * 21 13 12 31 31 H 1.08996 * 110.41168 * 277.81246 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8630 0.0000 13 7 2.1983 -5.9795 0.0007 14 6 3.1561 -5.8618 -1.1289 15 6 3.7019 -7.2922 -1.3268 16 1 3.8459 -7.4992 -2.3872 17 8 4.9308 -7.4573 -0.6164 18 6 2.6166 -8.2198 -0.7424 19 1 3.0213 -8.8009 0.0861 20 8 2.1087 -9.0896 -1.7561 21 6 1.5063 -7.2717 -0.2407 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3906 -0.0002 24 1 0.6174 -4.9205 -0.8903 25 1 0.6167 -4.9208 0.8897 26 1 3.9653 -5.1784 -0.8716 27 1 2.6427 -5.5229 -2.0288 28 1 5.6505 -6.8985 -0.9403 29 1 1.4227 -9.6965 -1.4461 30 1 0.7349 -7.1535 -1.0016 31 1 1.0733 -7.6499 0.6853 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236541168.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:20 Heat of formation + Delta-G solvation = -119.817512 kcal Electronic energy + Delta-G solvation = -16320.607665 eV Core-core repulsion = 13409.439202 eV Total energy + Delta-G solvation = -2911.168462 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.63856 -37.99056 -36.07285 -35.39775 -33.89119 -31.33679 -30.15353 -27.96330 -26.35684 -24.21440 -21.48457 -20.70199 -19.26583 -18.17863 -17.76594 -16.31678 -16.00115 -15.74474 -15.20244 -14.59960 -14.25707 -14.08211 -13.78719 -13.27117 -12.87622 -12.86013 -12.28226 -11.90075 -11.81379 -11.54696 -11.27559 -10.98444 -10.52137 -10.36427 -10.27156 -10.14702 -9.84909 -9.52645 -8.47963 -8.07837 -7.96317 -6.45244 -3.86220 3.14129 3.25104 3.32111 3.68924 3.85163 4.06695 4.26590 4.49060 4.68049 5.00641 5.10111 5.15114 5.22524 5.37869 5.61422 5.68929 5.73362 5.82563 5.88441 6.02776 6.21271 6.51263 7.03777 7.15828 7.49116 7.52256 7.78117 8.02279 8.57372 9.14211 9.49678 10.00957 10.72499 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.054764 B = 0.005590 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.161590 B = 5007.908348 C = 5364.610234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.442 3.558 11 O -0.581 6.581 12 C 0.033 3.967 13 N -0.479 5.479 14 C 0.007 3.993 15 C 0.104 3.896 16 H 0.070 0.930 17 O -0.558 6.558 18 C 0.105 3.895 19 H 0.079 0.921 20 O -0.565 6.565 21 C -0.001 4.001 22 H 0.271 0.729 23 H 0.392 0.608 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.124 0.876 27 H 0.045 0.955 28 H 0.384 0.616 29 H 0.381 0.619 30 H 0.053 0.947 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.504 -12.862 -2.377 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.197 5.197 10 C 0.227 3.773 11 O -0.466 6.466 12 C -0.099 4.099 13 N -0.204 5.204 14 C -0.120 4.120 15 C 0.044 3.956 16 H 0.088 0.912 17 O -0.364 6.364 18 C 0.046 3.954 19 H 0.097 0.903 20 O -0.370 6.370 21 C -0.130 4.130 22 H 0.081 0.919 23 H 0.226 0.774 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.141 0.859 27 H 0.063 0.937 28 H 0.232 0.768 29 H 0.229 0.771 30 H 0.071 0.929 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.525 -12.772 -1.886 13.000 hybrid contribution -0.994 1.057 -0.710 1.615 sum 0.531 -11.715 -2.597 12.011 Atomic orbital electron populations 1.69620 1.05982 1.28139 1.50476 1.25278 0.95638 0.99785 0.97218 0.85786 0.79702 0.81046 0.77730 1.19191 1.20749 1.20698 1.19757 0.93411 0.82148 1.47585 0.87801 1.41857 1.09227 1.04572 1.64061 1.19669 0.88342 0.84614 0.84633 1.90438 1.13706 1.86754 1.55677 1.22132 0.94629 0.91356 1.01799 1.65231 1.13389 0.99920 1.41815 1.24051 0.99183 0.96531 0.92270 1.22360 0.84648 0.93638 0.94933 0.91238 1.86415 1.20782 1.67457 1.61745 1.22354 0.92462 0.90634 0.89998 0.90265 1.86474 1.59517 1.52838 1.38175 1.23906 0.96333 0.91974 1.00796 0.91864 0.77428 0.93195 0.88972 0.85858 0.93713 0.76838 0.77144 0.92851 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.56 -14.20 5.29 -10.97 -0.06 -14.25 16 10 C 0.44 10.44 7.50 -10.99 -0.08 10.36 16 11 O -0.58 -15.39 13.24 5.55 0.07 -15.32 16 12 C 0.03 0.60 5.55 -4.98 -0.03 0.57 16 13 N -0.48 -8.40 5.34 -231.41 -1.23 -9.63 16 14 C 0.01 0.13 5.05 -2.18 -0.01 0.12 16 15 C 0.10 1.53 4.23 -25.35 -0.11 1.42 16 16 H 0.07 0.97 7.98 -51.93 -0.41 0.55 16 17 O -0.56 -8.20 13.26 -35.23 -0.47 -8.66 16 18 C 0.10 1.39 4.23 -25.35 -0.11 1.28 16 19 H 0.08 1.04 7.98 -51.93 -0.41 0.63 16 20 O -0.56 -6.59 13.27 -35.23 -0.47 -7.05 16 21 C 0.00 -0.02 6.24 -2.18 -0.01 -0.03 16 22 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 23 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 24 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 25 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 26 H 0.12 2.48 5.99 -51.93 -0.31 2.16 16 27 H 0.04 0.78 8.00 -51.93 -0.42 0.37 16 28 H 0.38 4.17 9.12 45.56 0.42 4.59 16 29 H 0.38 2.56 9.12 45.56 0.42 2.97 16 30 H 0.05 0.68 7.76 -51.93 -0.40 0.28 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 265.76 15.07 4.00 4.00 Total: -1.00 -32.86 265.76 -5.25 -38.11 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -2.21 Total: 14.84 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -0.59 Total: 5.78 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.57 Total: -47.59 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.86 Total: -31.03 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.86 -5.25 -38.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236541168.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.708 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds