Wall clock time and date at job start Mon Mar 30 2020 03:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99981 * 2 1 4 4 H 1.48507 * 109.46958 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46907 * 299.99670 * 3 2 1 6 6 H 1.48495 * 109.47084 * 60.00040 * 3 2 1 7 7 C 1.38950 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99751 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00646 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00551 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00008 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00092 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47319 * 180.02562 * 12 10 9 14 14 C 1.48569 * 110.99553 * 305.41731 * 13 12 10 15 15 C 1.54377 * 104.59247 * 200.95950 * 14 13 12 16 16 H 1.09003 * 110.32570 * 142.74936 * 15 14 13 17 17 O 1.42902 * 110.32539 * 264.95974 * 15 14 13 18 18 C 1.54266 * 105.06190 * 23.85295 * 15 14 13 19 19 H 1.08997 * 110.32179 * 241.10098 * 18 15 14 20 20 O 1.42899 * 110.32327 * 118.99672 * 18 15 14 21 21 C 1.48562 * 111.00084 * 190.00152 * 13 12 10 22 22 H 0.96999 * 120.00042 * 0.02562 * 1 2 3 23 23 H 0.97010 * 119.99151 * 0.02562 * 9 7 2 24 24 H 1.09004 * 109.47209 * 59.99806 * 12 10 9 25 25 H 1.09002 * 109.46944 * 300.00518 * 12 10 9 26 26 H 1.08996 * 110.41173 * 82.18280 * 14 13 12 27 27 H 1.09002 * 110.40866 * 319.73563 * 14 13 12 28 28 H 0.96701 * 113.99885 * 295.63531 * 17 15 14 29 29 H 0.96699 * 114.00092 * 179.97438 * 20 18 15 30 30 H 1.08992 * 110.41274 * 40.26003 * 21 13 12 31 31 H 1.08996 * 110.41168 * 277.81246 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8630 0.0000 13 7 2.1983 -5.9795 0.0007 14 6 3.1561 -5.8618 -1.1289 15 6 3.7019 -7.2922 -1.3268 16 1 3.8459 -7.4992 -2.3872 17 8 4.9308 -7.4573 -0.6164 18 6 2.6166 -8.2198 -0.7424 19 1 3.0213 -8.8009 0.0861 20 8 2.1087 -9.0896 -1.7561 21 6 1.5063 -7.2717 -0.2407 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3906 -0.0002 24 1 0.6174 -4.9205 -0.8903 25 1 0.6167 -4.9208 0.8897 26 1 3.9653 -5.1784 -0.8716 27 1 2.6427 -5.5229 -2.0288 28 1 5.6505 -6.8985 -0.9403 29 1 1.4227 -9.6965 -1.4461 30 1 0.7349 -7.1535 -1.0016 31 1 1.0733 -7.6499 0.6853 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236541168.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:19 Heat of formation + Delta-G solvation = -151.617599 kcal Electronic energy + Delta-G solvation = -16321.986620 eV Core-core repulsion = 13409.439202 eV Total energy + Delta-G solvation = -2912.547418 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.98599 -39.64828 -37.08548 -36.72483 -35.83299 -33.33660 -31.48571 -29.14731 -27.97443 -25.97091 -22.79522 -21.83048 -21.05708 -19.91566 -19.09994 -17.69934 -17.40478 -17.07327 -16.64445 -16.36133 -15.78422 -15.43223 -15.41621 -14.72465 -14.35032 -14.04194 -13.62000 -13.42430 -13.29976 -13.04851 -12.98899 -12.54487 -12.41880 -12.11445 -11.58352 -11.50431 -11.13714 -11.00368 -10.25196 -10.03280 -9.46258 -8.48671 -5.97440 1.35663 1.41516 1.55578 2.00625 2.27021 2.65746 2.93327 3.17874 3.26709 3.41963 3.68831 3.93998 4.11131 4.24795 4.30224 4.37775 4.48731 4.52784 4.64514 4.75806 4.87830 5.12423 5.39738 5.73230 5.80817 6.03205 6.57777 6.78483 6.82720 7.10590 7.52483 8.07925 8.69044 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.054764 B = 0.005590 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.161590 B = 5007.908348 C = 5364.610234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.571 5.571 10 C 0.438 3.562 11 O -0.614 6.614 12 C 0.044 3.956 13 N -0.501 5.501 14 C 0.010 3.990 15 C 0.105 3.895 16 H 0.078 0.922 17 O -0.570 6.570 18 C 0.113 3.887 19 H 0.082 0.918 20 O -0.571 6.571 21 C 0.003 3.997 22 H 0.278 0.722 23 H 0.396 0.604 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.038 0.962 28 H 0.396 0.604 29 H 0.404 0.596 30 H 0.066 0.934 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 -13.728 -2.425 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.208 5.208 10 C 0.225 3.775 11 O -0.500 6.500 12 C -0.087 4.087 13 N -0.226 5.226 14 C -0.118 4.118 15 C 0.046 3.954 16 H 0.096 0.904 17 O -0.378 6.378 18 C 0.054 3.946 19 H 0.100 0.900 20 O -0.380 6.380 21 C -0.125 4.125 22 H 0.087 0.913 23 H 0.230 0.770 24 H 0.089 0.911 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.056 0.944 28 H 0.247 0.753 29 H 0.255 0.745 30 H 0.084 0.916 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.667 -13.669 -1.934 13.821 hybrid contribution -0.723 1.250 -0.708 1.608 sum -0.055 -12.419 -2.642 12.697 Atomic orbital electron populations 1.69677 1.06877 1.29301 1.50298 1.26048 0.96532 1.02440 0.96192 0.84857 0.78028 0.77034 0.78329 1.19767 1.19574 1.19618 1.19704 0.92719 0.83906 1.49884 0.90221 1.41920 1.09330 1.04667 1.64910 1.20671 0.88307 0.85953 0.82523 1.90434 1.15530 1.87597 1.56485 1.22025 0.94297 0.88645 1.03742 1.65200 1.14001 1.01207 1.42205 1.23881 0.98337 0.97713 0.91911 1.22360 0.85066 0.92377 0.95628 0.90408 1.86381 1.21307 1.67869 1.62247 1.22185 0.91801 0.90571 0.90093 0.89978 1.86436 1.60531 1.53129 1.37908 1.23999 0.96393 0.89681 1.02401 0.91256 0.76990 0.91141 0.86815 0.89352 0.94397 0.75341 0.74497 0.91626 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.56 13.05 21.66 0.28 -49.27 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -29.34 5.29 -306.99 -1.62 -30.96 16 10 C 0.44 20.93 7.50 87.66 0.66 21.59 16 11 O -0.61 -33.53 13.24 -3.05 -0.04 -33.57 16 12 C 0.04 1.56 5.55 85.56 0.47 2.04 16 13 N -0.50 -16.88 5.34 -886.05 -4.73 -21.60 16 14 C 0.01 0.34 5.05 86.45 0.44 0.77 16 15 C 0.11 2.98 4.23 31.49 0.13 3.11 16 16 H 0.08 2.06 7.98 -2.39 -0.02 2.04 16 17 O -0.57 -16.30 13.26 -148.98 -1.98 -18.27 16 18 C 0.11 2.70 4.23 31.49 0.13 2.83 16 19 H 0.08 1.94 7.98 -2.39 -0.02 1.92 16 20 O -0.57 -11.51 13.27 -148.98 -1.98 -13.49 16 21 C 0.00 0.08 6.24 86.45 0.54 0.62 16 22 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 23 H 0.40 19.33 7.90 -92.70 -0.73 18.59 16 24 H 0.07 2.21 7.88 -2.38 -0.02 2.19 16 25 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 26 H 0.09 3.68 5.99 -2.39 -0.01 3.67 16 27 H 0.04 1.32 8.00 -2.39 -0.02 1.31 16 28 H 0.40 8.59 9.12 -74.06 -0.68 7.91 16 29 H 0.40 3.93 9.12 -74.06 -0.68 3.26 16 30 H 0.07 1.44 7.76 -2.39 -0.02 1.42 16 31 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -70.51 265.76 -5.28 -75.79 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.90 Total: 33.83 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 3.65 Total: 12.73 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -6.07 Total: -101.84 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -3.99 Total: -65.32 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -70.51 -5.28 -75.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236541168.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.827 kcal (2) G-P(sol) polarization free energy of solvation -70.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds