Wall clock time and date at job start Mon Mar 30 2020 03:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 120.00033 * 2 1 4 4 H 1.48498 * 109.47211 * 240.00562 * 3 2 1 5 5 H 1.48493 * 109.46980 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47017 * 120.00415 * 3 2 1 7 7 C 1.38947 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00159 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99978 * 359.97438 * 7 2 1 10 10 C 1.34783 * 120.00134 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99782 * 359.97438 * 10 9 7 12 12 C 1.50693 * 119.99915 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47071 * 180.02562 * 12 10 9 14 14 C 1.47900 * 111.00155 * 52.60344 * 13 12 10 15 15 C 1.53991 * 107.06142 * 145.84602 * 14 13 12 16 16 H 1.08995 * 110.39432 * 239.81724 * 15 14 13 17 17 O 1.42905 * 110.30874 * 117.68862 * 15 14 13 18 18 C 1.54596 * 105.13876 * 358.77670 * 15 14 13 19 19 H 1.08997 * 110.72707 * 96.57699 * 18 15 14 20 20 O 1.42900 * 110.72349 * 219.68539 * 18 15 14 21 21 C 1.48533 * 111.00390 * 169.99929 * 13 12 10 22 22 H 0.97001 * 119.99801 * 359.97438 * 1 2 3 23 23 H 0.96997 * 120.00339 * 359.97438 * 9 7 2 24 24 H 1.08993 * 109.47552 * 59.99993 * 12 10 9 25 25 H 1.08997 * 109.47070 * 299.99612 * 12 10 9 26 26 H 1.09000 * 109.91738 * 26.48870 * 14 13 12 27 27 H 1.09010 * 109.91764 * 265.19846 * 14 13 12 28 28 H 0.96696 * 114.00036 * 64.28618 * 17 15 14 29 29 H 0.96696 * 113.99850 * 179.97438 * 20 18 15 30 30 H 1.09001 * 110.66825 * 81.84403 * 21 13 12 31 31 H 1.08998 * 110.80763 * 318.78302 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1984 -5.9795 0.0005 14 6 3.1802 -5.8370 1.0974 15 6 3.5185 -7.2568 1.5882 16 1 3.2640 -7.3650 2.6425 17 8 4.9050 -7.5355 1.3824 18 6 2.6480 -8.2000 0.7265 19 1 3.2183 -8.5874 -0.1177 20 8 2.1278 -9.2708 1.5170 21 6 1.5064 -7.2714 0.2419 22 1 -0.4850 0.8401 0.0004 23 1 0.3534 -2.3907 0.0002 24 1 0.6168 -4.9209 -0.8896 25 1 0.6175 -4.9204 0.8903 26 1 2.7460 -5.2563 1.9113 27 1 4.0813 -5.3472 0.7279 28 1 5.4998 -6.9738 1.8978 29 1 1.5741 -9.8911 1.0233 30 1 1.0673 -7.6509 -0.6807 31 1 0.7440 -7.1641 1.0135 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236573092.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:22 Heat of formation + Delta-G solvation = -152.649254 kcal Electronic energy + Delta-G solvation = -16291.136907 eV Core-core repulsion = 13378.544754 eV Total energy + Delta-G solvation = -2912.592154 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.00427 -39.63702 -37.07911 -36.82608 -35.84322 -33.33544 -31.52004 -29.14742 -27.95269 -25.94337 -22.72810 -22.00631 -21.00565 -19.89451 -19.06583 -17.79057 -17.57396 -17.01886 -16.62536 -16.44632 -15.76820 -15.47718 -15.11713 -14.70548 -14.36520 -14.14915 -13.64780 -13.43466 -13.36018 -13.10260 -12.97064 -12.57215 -12.44463 -12.13047 -11.54733 -11.47855 -11.15133 -11.11526 -10.27313 -10.03365 -9.43181 -8.48258 -5.97215 1.38831 1.41381 1.52150 2.01098 2.27004 2.64832 2.97190 3.16698 3.20154 3.36355 3.64380 3.93724 4.09117 4.21604 4.27345 4.38354 4.48088 4.48979 4.62568 4.81331 4.88569 5.11126 5.39262 5.73849 5.82401 6.02243 6.57806 6.74231 6.83348 7.10378 7.52561 8.07890 8.68894 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.055492 B = 0.005527 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.460672 B = 5064.468878 C = 5434.549526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.571 5.571 10 C 0.436 3.564 11 O -0.616 6.616 12 C 0.047 3.953 13 N -0.508 5.508 14 C 0.029 3.971 15 C 0.098 3.902 16 H 0.076 0.924 17 O -0.572 6.572 18 C 0.114 3.886 19 H 0.081 0.919 20 O -0.570 6.570 21 C 0.009 3.991 22 H 0.278 0.722 23 H 0.396 0.604 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.396 0.604 29 H 0.403 0.597 30 H 0.113 0.887 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -13.485 2.279 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.098 0.902 9 N -0.208 5.208 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.084 4.084 13 N -0.234 5.234 14 C -0.100 4.100 15 C 0.038 3.962 16 H 0.093 0.907 17 O -0.380 6.380 18 C 0.054 3.946 19 H 0.099 0.901 20 O -0.378 6.378 21 C -0.119 4.119 22 H 0.088 0.912 23 H 0.230 0.770 24 H 0.134 0.866 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.246 0.754 29 H 0.254 0.746 30 H 0.131 0.869 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.300 -13.466 1.841 13.594 hybrid contribution -0.639 1.323 0.692 1.624 sum -0.338 -12.142 2.533 12.408 Atomic orbital electron populations 1.69663 1.06854 1.29433 1.50104 1.26036 0.96527 1.02406 0.96146 0.84986 0.77766 0.76628 0.78945 1.19740 1.19460 1.19689 1.19630 0.92722 0.83941 1.50131 0.90245 1.41908 1.09334 1.04650 1.64884 1.20709 0.88335 0.86004 0.82589 1.90481 1.15527 1.87688 1.56534 1.22040 0.94174 0.88317 1.03906 1.64500 1.13537 1.01541 1.43845 1.23438 0.98429 0.95903 0.92212 1.22613 0.82321 0.92311 0.98948 0.90664 1.86423 1.15986 1.63739 1.71845 1.22413 0.92586 0.86910 0.92650 0.90103 1.86442 1.71014 1.39941 1.40425 1.24036 0.96201 0.89034 1.02605 0.91235 0.76961 0.86591 0.91018 0.94739 0.90313 0.75351 0.74562 0.86872 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 3 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 10 C 0.44 20.69 7.35 87.65 0.64 21.33 16 11 O -0.62 -33.55 13.37 -3.08 -0.04 -33.59 16 12 C 0.05 1.62 5.48 85.55 0.47 2.09 16 13 N -0.51 -16.78 5.26 -887.59 -4.67 -21.45 16 14 C 0.03 0.99 4.88 86.45 0.42 1.41 16 15 C 0.10 2.76 4.12 31.47 0.13 2.89 16 16 H 0.08 2.00 8.07 -2.39 -0.02 1.99 16 17 O -0.57 -16.05 13.25 -148.98 -1.97 -18.03 16 18 C 0.11 2.75 4.18 31.80 0.13 2.88 16 19 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 20 O -0.57 -11.65 13.40 -148.98 -2.00 -13.64 16 21 C 0.01 0.21 6.28 86.65 0.54 0.75 16 22 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 23 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 24 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 25 H 0.07 2.20 7.90 -2.39 -0.02 2.18 16 26 H 0.03 1.25 7.59 -2.39 -0.02 1.23 16 27 H 0.08 3.26 6.57 -2.38 -0.02 3.24 16 28 H 0.40 8.13 9.12 -74.06 -0.68 7.45 16 29 H 0.40 4.01 9.12 -74.06 -0.68 3.33 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.42 7.86 -2.39 -0.02 1.40 16 Total: -1.00 -70.56 265.92 -5.27 -75.84 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.90 Total: 32.89 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 3.62 Total: 13.13 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -6.01 Total: -101.27 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -4.01 Total: -65.26 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -70.56 -5.27 -75.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236573092.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.813 kcal (2) G-P(sol) polarization free energy of solvation -70.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds