Wall clock time and date at job start Mon Mar 30 2020 02:49:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86800 * 120.00155 * 2 1
4 4 H 1.48503 * 109.46854 * 270.00171 * 3 2 1
5 5 H 1.48492 * 109.47114 * 29.99626 * 3 2 1
6 6 H 1.48494 * 109.47046 * 150.00099 * 3 2 1
7 7 C 1.37878 * 119.99902 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99907 * 359.97438 * 7 2 1
9 9 C 1.50696 * 120.00032 * 180.02562 * 7 2 1
10 10 N 1.46503 * 109.47042 * 180.02562 * 9 7 2
11 11 C 1.34776 * 119.99906 * 179.97438 * 10 9 7
12 12 S 1.71201 * 120.00087 * 354.91888 * 11 10 9
13 13 N 1.34775 * 120.00095 * 174.91264 * 11 10 9
14 14 C 1.47156 * 120.98382 * 184.75253 * 13 11 10
15 15 C 1.53710 * 108.16217 * 129.43156 * 14 13 11
16 16 O 1.42956 * 109.14443 * 52.54169 * 15 14 13
17 17 C 1.42970 * 114.16736 * 297.28431 * 16 15 14
18 18 C 1.47150 * 120.98118 * 5.03550 * 13 11 10
19 19 H 0.97001 * 119.99868 * 359.97438 * 1 2 3
20 20 H 1.09004 * 109.46858 * 299.99536 * 9 7 2
21 21 H 1.08995 * 109.47398 * 59.99923 * 9 7 2
22 22 H 0.96992 * 120.00011 * 359.97438 * 10 9 7
23 23 H 1.09001 * 109.67774 * 249.21637 * 14 13 11
24 24 H 1.09004 * 109.67758 * 9.76376 * 14 13 11
25 25 H 1.08992 * 109.66053 * 292.57008 * 15 14 13
26 26 H 1.09006 * 109.48017 * 172.39598 * 15 14 13
27 27 H 1.09004 * 109.50541 * 302.65982 * 17 16 15
28 28 H 1.08999 * 109.55179 * 182.53602 * 17 16 15
29 29 H 1.09000 * 109.68291 * 350.23573 * 18 13 11
30 30 H 1.08997 * 109.67862 * 110.78664 * 18 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4467 2.6526 0.6999
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0014
9 6 3.5115 -1.1941 0.0011
10 7 3.9998 -2.5754 0.0010
11 6 5.3248 -2.8217 0.0009
12 16 6.4363 -1.5262 -0.1303
13 7 5.7749 -4.0878 0.1043
14 6 7.2145 -4.3738 0.2108
15 6 7.4298 -5.3082 1.4121
16 8 6.5659 -6.4402 1.2863
17 6 5.1729 -6.1189 1.3087
18 6 4.8417 -5.2255 0.1079
19 1 -0.4850 0.8401 0.0004
20 1 3.8751 -0.6805 -0.8889
21 1 3.8745 -0.6801 0.8911
22 1 3.3694 -3.3126 0.0010
23 1 7.5609 -4.8586 -0.7019
24 1 7.7629 -3.4443 0.3642
25 1 7.2013 -4.7767 2.3358
26 1 8.4672 -5.6423 1.4314
27 1 4.9363 -5.5902 2.2322
28 1 4.5861 -7.0357 1.2534
29 1 3.8182 -4.8606 0.1931
30 1 4.9533 -5.7947 -0.8150
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000244311578.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:06
Heat of formation + Delta-G solvation = -19.816025 kcal
Electronic energy + Delta-G solvation = -14204.858244 eV
Core-core repulsion = 11740.779043 eV
Total energy + Delta-G solvation = -2464.079202 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 230.083 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.12092 -37.61895 -34.93509 -32.66389 -31.76295 -29.23943 -27.28755 -24.77870
-23.36755 -22.07425 -20.70272 -18.52483 -17.16353 -16.60992 -16.19389 -15.76381
-15.34723 -14.98216 -14.64684 -14.42446 -13.64484 -13.51961 -12.78806 -12.46606
-12.16097 -11.71227 -11.55967 -11.14069 -10.92148 -10.76321 -10.61293 -10.13050
-9.97495 -9.69078 -8.86059 -8.38550 -7.37550 -6.95675 -6.32758 -4.38486
1.86590 2.24801 2.91911 3.25496 3.32252 3.44143 3.52707 3.77630
4.27359 4.43418 4.65732 4.76999 4.83036 5.00543 5.03368 5.20370
5.37134 5.43520 5.56615 5.79005 6.23468 6.38861 6.79174 6.80806
6.91075 7.16009 7.26750 7.83077 8.17614 8.60032 9.24458 10.78304
Molecular weight = 230.08amu
Principal moments of inertia in cm(-1)
A = 0.040010 B = 0.007112 C = 0.006223
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 699.654046 B = 3935.952299 C = 4498.010045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.888 5.888
2 C 0.084 3.916
3 Si 0.874 3.126
4 H -0.270 1.270
5 H -0.282 1.282
6 H -0.253 1.253
7 C -0.557 4.557
8 H 0.077 0.923
9 C 0.222 3.778
10 N -0.647 5.647
11 C 0.564 3.436
12 S -0.677 6.677
13 N -0.589 5.589
14 C 0.077 3.923
15 C 0.048 3.952
16 O -0.381 6.381
17 C 0.051 3.949
18 C 0.062 3.938
19 H 0.270 0.730
20 H 0.046 0.954
21 H 0.046 0.954
22 H 0.394 0.606
23 H 0.079 0.921
24 H 0.132 0.868
25 H 0.059 0.941
26 H 0.110 0.890
27 H 0.060 0.940
28 H 0.110 0.890
29 H 0.092 0.908
30 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.893 -12.673 2.250 16.234
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.524 5.524
2 C -0.121 4.121
3 Si 0.699 3.301
4 H -0.195 1.195
5 H -0.208 1.208
6 H -0.177 1.177
7 C -0.595 4.595
8 H 0.095 0.905
9 C 0.101 3.899
10 N -0.272 5.272
11 C 0.202 3.798
12 S -0.549 6.549
13 N -0.304 5.304
14 C -0.047 4.047
15 C -0.030 4.030
16 O -0.299 6.299
17 C -0.027 4.027
18 C -0.064 4.064
19 H 0.080 0.920
20 H 0.063 0.937
21 H 0.064 0.936
22 H 0.232 0.768
23 H 0.098 0.902
24 H 0.150 0.850
25 H 0.077 0.923
26 H 0.128 0.872
27 H 0.078 0.922
28 H 0.128 0.872
29 H 0.110 0.890
30 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 10.386 -11.825 2.161 15.887
hybrid contribution -0.849 0.094 -0.032 0.855
sum 9.537 -11.732 2.129 15.268
Atomic orbital electron populations
1.69866 1.06288 1.27784 1.48480 1.24715 0.94794 0.99268 0.93314
0.86830 0.80880 0.82800 0.79545 1.19527 1.20808 1.17667 1.20980
0.88066 0.95389 1.55018 0.90466 1.20005 0.95113 0.75581 0.99246
1.45766 1.02371 1.13077 1.65964 1.22218 0.88549 0.87971 0.81032
1.93149 1.50053 1.35581 1.76166 1.47067 1.08322 1.02631 1.72392
1.22830 0.79699 1.02971 0.99174 1.23155 0.95311 0.87234 0.97255
1.87954 1.15737 1.31931 1.94282 1.22942 0.83201 0.99851 0.96684
1.22622 0.94456 0.88411 1.00944 0.92000 0.93653 0.93621 0.76768
0.90236 0.84989 0.92259 0.87200 0.92215 0.87216 0.88985 0.89479
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.75 13.96 55.43 0.77 -24.97 16
2 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16
3 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16
4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
6 H -0.25 -6.12 6.54 56.52 0.37 -5.75 16
7 C -0.56 -14.74 9.83 -34.44 -0.34 -15.08 16
8 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16
9 C 0.22 5.26 3.96 -5.19 -0.02 5.24 16
10 N -0.65 -12.57 5.46 -63.21 -0.35 -12.91 16
11 C 0.56 10.47 7.72 -86.92 -0.67 9.80 16
12 S -0.68 -15.07 27.09 -107.50 -2.91 -17.99 16
13 N -0.59 -8.33 3.01 -174.04 -0.52 -8.86 16
14 C 0.08 0.93 6.52 -3.31 -0.02 0.91 16
15 C 0.05 0.48 7.00 37.53 0.26 0.74 16
16 O -0.38 -4.12 10.74 -35.23 -0.38 -4.50 16
17 C 0.05 0.48 6.99 37.31 0.26 0.74 16
18 C 0.06 0.67 6.63 -3.54 -0.02 0.64 16
19 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16
20 H 0.05 1.15 7.32 -51.93 -0.38 0.77 16
21 H 0.05 1.15 7.14 -51.93 -0.37 0.78 16
22 H 0.39 6.66 5.83 -40.82 -0.24 6.42 16
23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16
24 H 0.13 1.85 6.11 -51.67 -0.32 1.54 16
25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
26 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16
27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16
29 H 0.09 0.96 5.66 -51.93 -0.29 0.66 16
30 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16
LS Contribution 259.69 15.07 3.91 3.91
Total: -1.00 -32.42 259.69 -8.51 -40.92
By element:
Atomic # 1 Polarization: 6.43 SS G_CDS: -3.71 Total: 2.71 kcal
Atomic # 6 Polarization: 5.87 SS G_CDS: -0.65 Total: 5.22 kcal
Atomic # 7 Polarization: -46.64 SS G_CDS: -0.10 Total: -46.74 kcal
Atomic # 8 Polarization: -4.12 SS G_CDS: -0.38 Total: -4.50 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal
Atomic # 16 Polarization: -15.07 SS G_CDS: -2.91 Total: -17.99 kcal
Total LS contribution 3.91 Total: 3.91 kcal
Total: -32.42 -8.51 -40.92 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000244311578.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.106 kcal
(2) G-P(sol) polarization free energy of solvation -32.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.309 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.816 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds