Wall clock time and date at job start Mon Mar 30 2020 02:49:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86800 * 120.00155 * 2 1
4 4 H 1.48503 * 109.46854 * 270.00171 * 3 2 1
5 5 H 1.48492 * 109.47114 * 29.99626 * 3 2 1
6 6 H 1.48494 * 109.47046 * 150.00099 * 3 2 1
7 7 C 1.37878 * 119.99902 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99907 * 359.97438 * 7 2 1
9 9 C 1.50696 * 120.00032 * 180.02562 * 7 2 1
10 10 N 1.46503 * 109.47042 * 180.02562 * 9 7 2
11 11 C 1.34776 * 119.99906 * 179.97438 * 10 9 7
12 12 S 1.71201 * 120.00087 * 354.91888 * 11 10 9
13 13 N 1.34775 * 120.00095 * 174.91264 * 11 10 9
14 14 C 1.47156 * 120.98382 * 184.75253 * 13 11 10
15 15 C 1.53710 * 108.16217 * 129.43156 * 14 13 11
16 16 O 1.42956 * 109.14443 * 52.54169 * 15 14 13
17 17 C 1.42970 * 114.16736 * 297.28431 * 16 15 14
18 18 C 1.47150 * 120.98118 * 5.03550 * 13 11 10
19 19 H 0.97001 * 119.99868 * 359.97438 * 1 2 3
20 20 H 1.09004 * 109.46858 * 299.99536 * 9 7 2
21 21 H 1.08995 * 109.47398 * 59.99923 * 9 7 2
22 22 H 0.96992 * 120.00011 * 359.97438 * 10 9 7
23 23 H 1.09001 * 109.67774 * 249.21637 * 14 13 11
24 24 H 1.09004 * 109.67758 * 9.76376 * 14 13 11
25 25 H 1.08992 * 109.66053 * 292.57008 * 15 14 13
26 26 H 1.09006 * 109.48017 * 172.39598 * 15 14 13
27 27 H 1.09004 * 109.50541 * 302.65982 * 17 16 15
28 28 H 1.08999 * 109.55179 * 182.53602 * 17 16 15
29 29 H 1.09000 * 109.68291 * 350.23573 * 18 13 11
30 30 H 1.08997 * 109.67862 * 110.78664 * 18 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4467 2.6526 0.6999
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0014
9 6 3.5115 -1.1941 0.0011
10 7 3.9998 -2.5754 0.0010
11 6 5.3248 -2.8217 0.0009
12 16 6.4363 -1.5262 -0.1303
13 7 5.7749 -4.0878 0.1043
14 6 7.2145 -4.3738 0.2108
15 6 7.4298 -5.3082 1.4121
16 8 6.5659 -6.4402 1.2863
17 6 5.1729 -6.1189 1.3087
18 6 4.8417 -5.2255 0.1079
19 1 -0.4850 0.8401 0.0004
20 1 3.8751 -0.6805 -0.8889
21 1 3.8745 -0.6801 0.8911
22 1 3.3694 -3.3126 0.0010
23 1 7.5609 -4.8586 -0.7019
24 1 7.7629 -3.4443 0.3642
25 1 7.2013 -4.7767 2.3358
26 1 8.4672 -5.6423 1.4314
27 1 4.9363 -5.5902 2.2322
28 1 4.5861 -7.0357 1.2534
29 1 3.8182 -4.8606 0.1931
30 1 4.9533 -5.7947 -0.8150
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000244311578.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:05
Heat of formation + Delta-G solvation = -42.624595 kcal
Electronic energy + Delta-G solvation = -14205.847298 eV
Core-core repulsion = 11740.779043 eV
Total energy + Delta-G solvation = -2465.068255 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 230.083 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.23197 -38.88596 -36.35165 -34.64242 -32.65915 -30.82396 -28.73157 -25.75567
-24.80003 -23.79384 -21.82283 -19.97531 -18.71544 -18.24484 -17.18466 -16.90803
-16.55072 -16.20612 -15.90299 -15.83775 -15.31791 -15.09148 -14.52673 -13.62381
-13.19809 -13.13758 -13.07371 -12.55416 -12.49890 -12.24758 -11.93510 -11.79276
-11.70918 -11.16332 -10.89787 -9.77660 -9.04663 -8.70038 -8.45603 -6.54520
0.35418 0.79317 1.33130 1.36413 1.50849 1.52965 2.25630 2.32209
2.76472 2.90900 3.57177 3.73830 3.90595 3.99998 4.14791 4.34741
4.57017 4.62985 4.67704 4.74945 4.85408 4.93886 5.01065 5.12439
5.40922 5.65546 5.99659 6.07689 6.30227 6.51779 7.12001 8.68210
Molecular weight = 230.08amu
Principal moments of inertia in cm(-1)
A = 0.040010 B = 0.007112 C = 0.006223
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 699.654046 B = 3935.952299 C = 4498.010045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.038 3.962
3 Si 0.929 3.071
4 H -0.266 1.266
5 H -0.273 1.273
6 H -0.256 1.256
7 C -0.555 4.555
8 H 0.062 0.938
9 C 0.242 3.758
10 N -0.648 5.648
11 C 0.580 3.420
12 S -0.753 6.753
13 N -0.571 5.571
14 C 0.072 3.928
15 C 0.056 3.944
16 O -0.386 6.386
17 C 0.053 3.947
18 C 0.054 3.946
19 H 0.274 0.726
20 H 0.031 0.969
21 H 0.031 0.969
22 H 0.407 0.593
23 H 0.097 0.903
24 H 0.113 0.887
25 H 0.053 0.947
26 H 0.139 0.861
27 H 0.055 0.945
28 H 0.142 0.858
29 H 0.096 0.904
30 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.589 -14.362 2.423 18.007
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.563 5.563
2 C -0.164 4.164
3 Si 0.753 3.247
4 H -0.191 1.191
5 H -0.198 1.198
6 H -0.180 1.180
7 C -0.593 4.593
8 H 0.080 0.920
9 C 0.119 3.881
10 N -0.276 5.276
11 C 0.215 3.785
12 S -0.626 6.626
13 N -0.283 5.283
14 C -0.051 4.051
15 C -0.022 4.022
16 O -0.304 6.304
17 C -0.024 4.024
18 C -0.070 4.070
19 H 0.084 0.916
20 H 0.049 0.951
21 H 0.049 0.951
22 H 0.248 0.752
23 H 0.115 0.885
24 H 0.131 0.869
25 H 0.071 0.929
26 H 0.157 0.843
27 H 0.073 0.927
28 H 0.159 0.841
29 H 0.114 0.886
30 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 11.106 -13.598 2.341 17.712
hybrid contribution -1.058 0.410 -0.082 1.137
sum 10.048 -13.188 2.259 16.733
Atomic orbital electron populations
1.69949 1.07586 1.28818 1.49961 1.25430 0.95422 1.02337 0.93221
0.85959 0.79546 0.79564 0.79624 1.19147 1.19787 1.18019 1.21177
0.89430 0.94793 1.53864 0.91991 1.19465 0.93173 0.77590 0.97853
1.45316 1.02983 1.12002 1.67295 1.21730 0.87289 0.88757 0.80691
1.93289 1.51543 1.38617 1.79131 1.47400 1.10103 1.01855 1.68934
1.23051 0.78013 1.02791 1.01247 1.23189 0.96857 0.86590 0.95531
1.87965 1.16296 1.32047 1.94103 1.23089 0.83030 1.00843 0.95486
1.23014 0.93822 0.87249 1.02952 0.91627 0.95125 0.95065 0.75155
0.88471 0.86949 0.92867 0.84320 0.92674 0.84067 0.88595 0.87278
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.81 13.96 21.45 0.30 -53.51 16
2 C 0.04 2.07 5.47 84.65 0.46 2.53 16
3 Si 0.93 43.67 27.47 68.60 1.88 45.55 16
4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16
5 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16
6 H -0.26 -12.11 6.54 99.48 0.65 -11.46 16
7 C -0.55 -29.42 9.83 25.60 0.25 -29.17 16
8 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16
9 C 0.24 11.47 3.96 85.63 0.34 11.81 16
10 N -0.65 -24.67 5.46 -353.91 -1.93 -26.61 16
11 C 0.58 21.03 7.72 179.06 1.38 22.41 16
12 S -0.75 -33.76 27.09 -56.49 -1.53 -35.29 16
13 N -0.57 -14.99 3.01 -704.54 -2.12 -17.11 16
14 C 0.07 1.59 6.52 86.49 0.56 2.15 16
15 C 0.06 0.95 7.00 72.22 0.51 1.45 16
16 O -0.39 -6.92 10.74 -148.98 -1.60 -8.52 16
17 C 0.05 0.81 6.99 72.08 0.50 1.31 16
18 C 0.05 0.99 6.63 86.35 0.57 1.56 16
19 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16
20 H 0.03 1.56 7.32 -2.38 -0.02 1.54 16
21 H 0.03 1.58 7.14 -2.39 -0.02 1.57 16
22 H 0.41 13.23 5.83 -92.71 -0.54 12.69 16
23 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16
24 H 0.11 3.07 6.11 -2.55 -0.02 3.05 16
25 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16
26 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16
27 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16
28 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16
29 H 0.10 1.72 5.66 -2.39 -0.01 1.71 16
30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16
Total: -1.00 -69.86 259.69 0.13 -69.73
By element:
Atomic # 1 Polarization: 11.14 SS G_CDS: 0.55 Total: 11.69 kcal
Atomic # 6 Polarization: 9.48 SS G_CDS: 4.58 Total: 14.06 kcal
Atomic # 7 Polarization: -93.47 SS G_CDS: -3.76 Total: -97.23 kcal
Atomic # 8 Polarization: -6.92 SS G_CDS: -1.60 Total: -8.52 kcal
Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal
Atomic # 16 Polarization: -33.76 SS G_CDS: -1.53 Total: -35.29 kcal
Total: -69.86 0.13 -69.73 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000244311578.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.103 kcal
(2) G-P(sol) polarization free energy of solvation -69.855 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.753 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.625 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds