Wall clock time and date at job start Mon Mar 30 2020 02:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00155 * 2 1 4 4 H 1.48503 * 109.46854 * 270.00171 * 3 2 1 5 5 H 1.48492 * 109.47114 * 29.99626 * 3 2 1 6 6 H 1.48494 * 109.47046 * 150.00099 * 3 2 1 7 7 C 1.37878 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99907 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00032 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99906 * 179.97438 * 10 9 7 12 12 S 1.71201 * 120.00087 * 354.91888 * 11 10 9 13 13 N 1.34775 * 120.00095 * 174.91264 * 11 10 9 14 14 C 1.47156 * 120.98382 * 184.75253 * 13 11 10 15 15 C 1.53710 * 108.16217 * 129.43156 * 14 13 11 16 16 O 1.42956 * 109.14443 * 52.54169 * 15 14 13 17 17 C 1.42970 * 114.16736 * 297.28431 * 16 15 14 18 18 C 1.47150 * 120.98118 * 5.03550 * 13 11 10 19 19 H 0.97001 * 119.99868 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46858 * 299.99536 * 9 7 2 21 21 H 1.08995 * 109.47398 * 59.99923 * 9 7 2 22 22 H 0.96992 * 120.00011 * 359.97438 * 10 9 7 23 23 H 1.09001 * 109.67774 * 249.21637 * 14 13 11 24 24 H 1.09004 * 109.67758 * 9.76376 * 14 13 11 25 25 H 1.08992 * 109.66053 * 292.57008 * 15 14 13 26 26 H 1.09006 * 109.48017 * 172.39598 * 15 14 13 27 27 H 1.09004 * 109.50541 * 302.65982 * 17 16 15 28 28 H 1.08999 * 109.55179 * 182.53602 * 17 16 15 29 29 H 1.09000 * 109.68291 * 350.23573 * 18 13 11 30 30 H 1.08997 * 109.67862 * 110.78664 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3248 -2.8217 0.0009 12 16 6.4363 -1.5262 -0.1303 13 7 5.7749 -4.0878 0.1043 14 6 7.2145 -4.3738 0.2108 15 6 7.4298 -5.3082 1.4121 16 8 6.5659 -6.4402 1.2863 17 6 5.1729 -6.1189 1.3087 18 6 4.8417 -5.2255 0.1079 19 1 -0.4850 0.8401 0.0004 20 1 3.8751 -0.6805 -0.8889 21 1 3.8745 -0.6801 0.8911 22 1 3.3694 -3.3126 0.0010 23 1 7.5609 -4.8586 -0.7019 24 1 7.7629 -3.4443 0.3642 25 1 7.2013 -4.7767 2.3358 26 1 8.4672 -5.6423 1.4314 27 1 4.9363 -5.5902 2.2322 28 1 4.5861 -7.0357 1.2534 29 1 3.8182 -4.8606 0.1931 30 1 4.9533 -5.7947 -0.8150 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000244311578.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:05 Heat of formation + Delta-G solvation = -42.624595 kcal Electronic energy + Delta-G solvation = -14205.847298 eV Core-core repulsion = 11740.779043 eV Total energy + Delta-G solvation = -2465.068255 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.23197 -38.88596 -36.35165 -34.64242 -32.65915 -30.82396 -28.73157 -25.75567 -24.80003 -23.79384 -21.82283 -19.97531 -18.71544 -18.24484 -17.18466 -16.90803 -16.55072 -16.20612 -15.90299 -15.83775 -15.31791 -15.09148 -14.52673 -13.62381 -13.19809 -13.13758 -13.07371 -12.55416 -12.49890 -12.24758 -11.93510 -11.79276 -11.70918 -11.16332 -10.89787 -9.77660 -9.04663 -8.70038 -8.45603 -6.54520 0.35418 0.79317 1.33130 1.36413 1.50849 1.52965 2.25630 2.32209 2.76472 2.90900 3.57177 3.73830 3.90595 3.99998 4.14791 4.34741 4.57017 4.62985 4.67704 4.74945 4.85408 4.93886 5.01065 5.12439 5.40922 5.65546 5.99659 6.07689 6.30227 6.51779 7.12001 8.68210 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.040010 B = 0.007112 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.654046 B = 3935.952299 C = 4498.010045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.038 3.962 3 Si 0.929 3.071 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.555 4.555 8 H 0.062 0.938 9 C 0.242 3.758 10 N -0.648 5.648 11 C 0.580 3.420 12 S -0.753 6.753 13 N -0.571 5.571 14 C 0.072 3.928 15 C 0.056 3.944 16 O -0.386 6.386 17 C 0.053 3.947 18 C 0.054 3.946 19 H 0.274 0.726 20 H 0.031 0.969 21 H 0.031 0.969 22 H 0.407 0.593 23 H 0.097 0.903 24 H 0.113 0.887 25 H 0.053 0.947 26 H 0.139 0.861 27 H 0.055 0.945 28 H 0.142 0.858 29 H 0.096 0.904 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.589 -14.362 2.423 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.164 4.164 3 Si 0.753 3.247 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.593 4.593 8 H 0.080 0.920 9 C 0.119 3.881 10 N -0.276 5.276 11 C 0.215 3.785 12 S -0.626 6.626 13 N -0.283 5.283 14 C -0.051 4.051 15 C -0.022 4.022 16 O -0.304 6.304 17 C -0.024 4.024 18 C -0.070 4.070 19 H 0.084 0.916 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.248 0.752 23 H 0.115 0.885 24 H 0.131 0.869 25 H 0.071 0.929 26 H 0.157 0.843 27 H 0.073 0.927 28 H 0.159 0.841 29 H 0.114 0.886 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.106 -13.598 2.341 17.712 hybrid contribution -1.058 0.410 -0.082 1.137 sum 10.048 -13.188 2.259 16.733 Atomic orbital electron populations 1.69949 1.07586 1.28818 1.49961 1.25430 0.95422 1.02337 0.93221 0.85959 0.79546 0.79564 0.79624 1.19147 1.19787 1.18019 1.21177 0.89430 0.94793 1.53864 0.91991 1.19465 0.93173 0.77590 0.97853 1.45316 1.02983 1.12002 1.67295 1.21730 0.87289 0.88757 0.80691 1.93289 1.51543 1.38617 1.79131 1.47400 1.10103 1.01855 1.68934 1.23051 0.78013 1.02791 1.01247 1.23189 0.96857 0.86590 0.95531 1.87965 1.16296 1.32047 1.94103 1.23089 0.83030 1.00843 0.95486 1.23014 0.93822 0.87249 1.02952 0.91627 0.95125 0.95065 0.75155 0.88471 0.86949 0.92867 0.84320 0.92674 0.84067 0.88595 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.81 13.96 21.45 0.30 -53.51 16 2 C 0.04 2.07 5.47 84.65 0.46 2.53 16 3 Si 0.93 43.67 27.47 68.60 1.88 45.55 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.26 -12.11 6.54 99.48 0.65 -11.46 16 7 C -0.55 -29.42 9.83 25.60 0.25 -29.17 16 8 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 9 C 0.24 11.47 3.96 85.63 0.34 11.81 16 10 N -0.65 -24.67 5.46 -353.91 -1.93 -26.61 16 11 C 0.58 21.03 7.72 179.06 1.38 22.41 16 12 S -0.75 -33.76 27.09 -56.49 -1.53 -35.29 16 13 N -0.57 -14.99 3.01 -704.54 -2.12 -17.11 16 14 C 0.07 1.59 6.52 86.49 0.56 2.15 16 15 C 0.06 0.95 7.00 72.22 0.51 1.45 16 16 O -0.39 -6.92 10.74 -148.98 -1.60 -8.52 16 17 C 0.05 0.81 6.99 72.08 0.50 1.31 16 18 C 0.05 0.99 6.63 86.35 0.57 1.56 16 19 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 20 H 0.03 1.56 7.32 -2.38 -0.02 1.54 16 21 H 0.03 1.58 7.14 -2.39 -0.02 1.57 16 22 H 0.41 13.23 5.83 -92.71 -0.54 12.69 16 23 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.11 3.07 6.11 -2.55 -0.02 3.05 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 26 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.72 5.66 -2.39 -0.01 1.71 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -69.86 259.69 0.13 -69.73 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.55 Total: 11.69 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 4.58 Total: 14.06 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -3.76 Total: -97.23 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -1.60 Total: -8.52 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Atomic # 16 Polarization: -33.76 SS G_CDS: -1.53 Total: -35.29 kcal Total: -69.86 0.13 -69.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244311578.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.103 kcal (2) G-P(sol) polarization free energy of solvation -69.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds