Wall clock time and date at job start Mon Mar 30 2020 03:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86804 * 119.99625 * 2 1 4 4 H 1.48504 * 109.47444 * 270.00219 * 3 2 1 5 5 H 1.48496 * 109.47086 * 30.00187 * 3 2 1 6 6 H 1.48499 * 109.46914 * 150.00235 * 3 2 1 7 7 C 1.38780 * 120.00537 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99587 * 359.97438 * 7 2 1 9 9 N 1.36876 * 120.00551 * 179.97438 * 7 2 1 10 10 C 1.38815 * 120.00253 * 180.02562 * 9 7 2 11 11 C 1.39745 * 120.04955 * 0.02562 * 10 9 7 12 12 C 1.38240 * 118.00886 * 179.97438 * 11 10 9 13 13 C 1.39991 * 117.97263 * 359.97438 * 12 11 10 14 14 C 1.48225 * 120.09882 * 179.97438 * 13 12 11 15 15 C 1.41888 * 126.47512 * 179.97438 * 14 13 12 16 16 C 1.34583 * 107.31705 * 179.73670 * 15 14 13 17 17 N 1.36451 * 108.54506 * 0.26506 * 16 15 14 18 18 H 0.97003 * 125.48792 * 180.02562 * 17 16 15 19 19 C 1.36040 * 109.02688 * 359.97438 * 17 16 15 20 20 N 1.32711 * 119.80494 * 0.25044 * 13 12 11 21 21 N 1.28346 * 122.12348 * 359.47286 * 20 13 12 22 22 H 0.97001 * 120.00830 * 359.97438 * 1 2 3 23 23 H 0.97006 * 119.99537 * 0.02562 * 9 7 2 24 24 H 1.07999 * 120.99409 * 359.95829 * 11 10 9 25 25 H 1.08001 * 121.01820 * 179.97438 * 12 11 10 26 26 H 1.08002 * 126.34394 * 0.02562 * 15 14 13 27 27 H 1.08002 * 125.72139 * 180.24693 * 16 15 14 28 28 H 1.08007 * 125.96817 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0466 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5473 1.4403 0.7000 7 6 2.0098 -1.2018 -0.0005 8 1 1.4698 -2.1371 -0.0005 9 7 3.3786 -1.2018 -0.0011 10 6 4.0727 -2.4040 -0.0021 11 6 3.3751 -3.6148 -0.0032 12 6 4.1085 -4.7866 -0.0048 13 6 5.5049 -4.6872 -0.0058 14 6 6.3374 -5.9136 -0.0069 15 6 7.7551 -5.9707 -0.0085 16 6 8.1037 -7.2706 -0.0032 17 7 6.9666 -8.0248 -0.0044 18 1 6.9339 -8.9943 -0.0011 19 6 5.8861 -7.1983 -0.0099 20 7 6.0811 -3.4918 -0.0002 21 7 5.3983 -2.4050 -0.0037 22 1 -0.4851 0.8400 0.0004 23 1 3.8635 -0.3617 -0.0007 24 1 2.2953 -3.6345 -0.0026 25 1 3.6192 -5.7494 -0.0053 26 1 8.4296 -5.1272 -0.0087 27 1 9.1139 -7.6525 0.0009 28 1 4.8512 -7.5071 -0.0117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259347795.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:01 Heat of formation + Delta-G solvation = 109.253204 kcal Electronic energy + Delta-G solvation = -14589.890733 eV Core-core repulsion = 12028.257193 eV Total energy + Delta-G solvation = -2561.633540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77820 -39.52486 -35.91026 -32.74360 -32.27574 -30.99558 -29.32725 -28.08433 -24.96834 -23.50335 -22.25561 -20.30154 -19.56574 -18.69649 -17.92399 -16.74701 -16.07018 -14.75769 -14.50597 -14.23226 -13.66301 -13.51150 -13.40778 -12.93168 -12.77982 -12.35600 -11.98331 -11.73563 -11.70582 -10.90250 -10.72261 -10.20242 -10.17223 -9.51449 -9.18223 -8.51326 -8.48447 -8.07555 -7.09694 -6.66298 -3.97133 1.83372 1.96767 2.59657 2.99205 3.02795 3.06040 3.48644 3.49385 3.89732 4.39732 4.65466 5.08669 5.18262 5.30821 5.37048 5.59095 5.67052 5.92587 6.01409 6.08579 6.35838 6.55963 6.69881 6.97909 7.12808 7.21004 7.37989 7.41197 7.69389 7.75556 8.35119 8.98208 9.02256 10.03179 10.43426 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.070140 B = 0.005285 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.103470 B = 5296.995817 C = 5686.254930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.047 3.953 3 Si 0.883 3.117 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.308 4.308 8 H 0.121 0.879 9 N -0.547 5.547 10 C 0.300 3.700 11 C -0.182 4.182 12 C -0.077 4.077 13 C 0.017 3.983 14 C -0.082 4.082 15 C -0.170 4.170 16 C -0.031 4.031 17 N -0.562 5.562 18 H 0.411 0.589 19 C -0.017 4.017 20 N -0.189 5.189 21 N -0.348 5.348 22 H 0.281 0.719 23 H 0.387 0.613 24 H 0.141 0.859 25 H 0.126 0.874 26 H 0.139 0.861 27 H 0.160 0.840 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.550 -11.960 -0.013 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.160 4.160 3 Si 0.708 3.292 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.157 5.157 10 C 0.053 3.947 11 C -0.216 4.216 12 C -0.104 4.104 13 C -0.134 4.134 14 C -0.090 4.090 15 C -0.195 4.195 16 C -0.160 4.160 17 N -0.157 5.157 18 H 0.247 0.753 19 C -0.150 4.150 20 N -0.034 5.034 21 N -0.208 5.208 22 H 0.091 0.909 23 H 0.222 0.778 24 H 0.159 0.841 25 H 0.144 0.856 26 H 0.157 0.843 27 H 0.177 0.823 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.340 -10.908 -0.010 14.361 hybrid contribution -1.067 -0.065 0.013 1.069 sum 8.273 -10.974 0.003 13.743 Atomic orbital electron populations 1.69668 1.05661 1.28582 1.46003 1.25010 0.95634 0.98691 0.96633 0.86550 0.80146 0.82879 0.79608 1.19045 1.19693 1.18689 1.19435 0.78714 0.96950 1.48700 0.86131 1.40911 1.05991 1.03661 1.65133 1.19784 0.90613 0.87370 0.96889 1.21581 1.01397 0.91141 1.07486 1.21769 0.93604 0.98263 0.96795 1.19870 0.90619 0.92289 1.10637 1.17745 0.92834 0.89889 1.08578 1.20978 0.94763 0.95593 1.08214 1.21711 0.90702 0.91470 1.12140 1.41739 1.05971 1.08421 1.59586 0.75296 1.21701 0.91914 0.89609 1.11819 1.72597 1.30602 0.94480 1.05715 1.72770 1.03905 1.19643 1.24441 0.90899 0.77767 0.84147 0.85595 0.84279 0.82278 0.81982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.13 13.97 55.49 0.77 -22.36 15 2 C 0.05 1.20 5.50 -17.46 -0.10 1.11 15 3 Si 0.88 19.07 27.73 -169.99 -4.71 14.36 15 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.27 -5.80 7.11 56.52 0.40 -5.39 15 6 H -0.26 -5.50 6.52 56.52 0.37 -5.13 15 7 C -0.31 -7.87 10.03 -15.10 -0.15 -8.02 15 8 H 0.12 3.17 5.93 -52.49 -0.31 2.86 15 9 N -0.55 -13.15 5.24 -11.03 -0.06 -13.21 15 10 C 0.30 7.05 7.71 -154.83 -1.19 5.86 15 11 C -0.18 -3.85 9.40 -39.02 -0.37 -4.22 15 12 C -0.08 -1.42 9.69 -38.92 -0.38 -1.80 15 13 C 0.02 0.33 6.84 -82.73 -0.57 -0.24 15 14 C -0.08 -1.37 6.10 -105.14 -0.64 -2.01 15 15 C -0.17 -2.60 10.64 -39.48 -0.42 -3.02 15 16 C -0.03 -0.36 11.91 -16.79 -0.20 -0.56 15 17 N -0.56 -5.79 6.05 -12.65 -0.08 -5.87 15 18 H 0.41 2.62 8.96 -40.82 -0.37 2.26 15 19 C -0.02 -0.22 11.36 -16.43 -0.19 -0.41 15 20 N -0.19 -4.26 11.27 33.38 0.38 -3.88 15 21 N -0.35 -8.33 11.53 31.25 0.36 -7.97 15 22 H 0.28 6.97 8.31 -40.82 -0.34 6.63 15 23 H 0.39 8.97 5.88 -40.82 -0.24 8.73 15 24 H 0.14 2.89 6.04 -52.49 -0.32 2.57 15 25 H 0.13 1.83 7.11 -52.49 -0.37 1.46 15 26 H 0.14 2.16 8.06 -52.49 -0.42 1.73 15 27 H 0.16 1.30 8.06 -52.49 -0.42 0.87 15 28 H 0.16 1.67 7.32 -52.48 -0.38 1.29 15 LS Contribution 251.36 15.07 3.79 3.79 Total: -1.00 -30.10 251.36 -5.75 -35.86 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -2.00 Total: 12.59 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -4.20 Total: -13.31 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 1.38 Total: -53.29 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.10 -5.75 -35.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259347795.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.108 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds