Wall clock time and date at job start Mon Mar 30 2020 03:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86804 * 119.99625 * 2 1 4 4 H 1.48504 * 109.47444 * 270.00219 * 3 2 1 5 5 H 1.48496 * 109.47086 * 30.00187 * 3 2 1 6 6 H 1.48499 * 109.46914 * 150.00235 * 3 2 1 7 7 C 1.38780 * 120.00537 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99587 * 359.97438 * 7 2 1 9 9 N 1.36876 * 120.00551 * 179.97438 * 7 2 1 10 10 C 1.38815 * 120.00253 * 180.02562 * 9 7 2 11 11 C 1.39745 * 120.04955 * 0.02562 * 10 9 7 12 12 C 1.38240 * 118.00886 * 179.97438 * 11 10 9 13 13 C 1.39991 * 117.97263 * 359.97438 * 12 11 10 14 14 C 1.48225 * 120.09882 * 179.97438 * 13 12 11 15 15 C 1.41888 * 126.47512 * 179.97438 * 14 13 12 16 16 C 1.34583 * 107.31705 * 179.73670 * 15 14 13 17 17 N 1.36451 * 108.54506 * 0.26506 * 16 15 14 18 18 H 0.97003 * 125.48792 * 180.02562 * 17 16 15 19 19 C 1.36040 * 109.02688 * 359.97438 * 17 16 15 20 20 N 1.32711 * 119.80494 * 0.25044 * 13 12 11 21 21 N 1.28346 * 122.12348 * 359.47286 * 20 13 12 22 22 H 0.97001 * 120.00830 * 359.97438 * 1 2 3 23 23 H 0.97006 * 119.99537 * 0.02562 * 9 7 2 24 24 H 1.07999 * 120.99409 * 359.95829 * 11 10 9 25 25 H 1.08001 * 121.01820 * 179.97438 * 12 11 10 26 26 H 1.08002 * 126.34394 * 0.02562 * 15 14 13 27 27 H 1.08002 * 125.72139 * 180.24693 * 16 15 14 28 28 H 1.08007 * 125.96817 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0466 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5473 1.4403 0.7000 7 6 2.0098 -1.2018 -0.0005 8 1 1.4698 -2.1371 -0.0005 9 7 3.3786 -1.2018 -0.0011 10 6 4.0727 -2.4040 -0.0021 11 6 3.3751 -3.6148 -0.0032 12 6 4.1085 -4.7866 -0.0048 13 6 5.5049 -4.6872 -0.0058 14 6 6.3374 -5.9136 -0.0069 15 6 7.7551 -5.9707 -0.0085 16 6 8.1037 -7.2706 -0.0032 17 7 6.9666 -8.0248 -0.0044 18 1 6.9339 -8.9943 -0.0011 19 6 5.8861 -7.1983 -0.0099 20 7 6.0811 -3.4918 -0.0002 21 7 5.3983 -2.4050 -0.0037 22 1 -0.4851 0.8400 0.0004 23 1 3.8635 -0.3617 -0.0007 24 1 2.2953 -3.6345 -0.0026 25 1 3.6192 -5.7494 -0.0053 26 1 8.4296 -5.1272 -0.0087 27 1 9.1139 -7.6525 0.0009 28 1 4.8512 -7.5071 -0.0117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259347795.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:01 Heat of formation + Delta-G solvation = 88.766113 kcal Electronic energy + Delta-G solvation = -14590.779120 eV Core-core repulsion = 12028.257193 eV Total energy + Delta-G solvation = -2562.521927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92760 -41.12951 -37.67007 -34.43649 -33.97035 -32.44718 -30.64378 -29.37520 -26.70743 -25.15384 -23.89051 -21.38931 -20.94713 -20.18909 -19.15166 -18.45773 -17.79188 -16.47828 -15.94514 -15.82385 -15.08140 -14.83325 -14.76328 -14.36485 -14.15786 -13.97588 -13.47611 -13.31452 -12.92339 -12.58455 -12.43403 -12.02130 -11.82473 -11.14706 -10.93935 -10.17787 -9.94506 -9.22028 -8.58757 -8.53525 -5.91449 0.28140 0.31547 1.29001 1.30368 1.36263 1.56631 2.13314 2.15391 2.57619 2.69206 2.89121 3.32185 3.76439 4.00610 4.06319 4.24974 4.51323 4.52821 4.60782 4.82672 5.01398 5.14327 5.29538 5.43996 5.59692 5.66730 5.86111 6.05493 6.27062 6.49312 6.95128 7.14277 7.20217 8.30991 8.59883 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.070140 B = 0.005285 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.103470 B = 5296.995817 C = 5686.254930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.001 3.999 3 Si 0.942 3.058 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.315 4.315 8 H 0.102 0.898 9 N -0.568 5.568 10 C 0.292 3.708 11 C -0.191 4.191 12 C -0.065 4.065 13 C 0.041 3.959 14 C -0.142 4.142 15 C -0.209 4.209 16 C -0.006 4.006 17 N -0.540 5.540 18 H 0.436 0.564 19 C 0.014 3.986 20 N -0.228 5.228 21 N -0.374 5.374 22 H 0.282 0.718 23 H 0.387 0.613 24 H 0.144 0.856 25 H 0.177 0.823 26 H 0.122 0.878 27 H 0.199 0.801 28 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.092 -15.308 -0.003 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.201 4.201 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.444 4.444 8 H 0.119 0.881 9 N -0.183 5.183 10 C 0.046 3.954 11 C -0.225 4.225 12 C -0.092 4.092 13 C -0.111 4.111 14 C -0.151 4.151 15 C -0.234 4.234 16 C -0.137 4.137 17 N -0.136 5.136 18 H 0.276 0.724 19 C -0.122 4.122 20 N -0.070 5.070 21 N -0.231 5.231 22 H 0.092 0.908 23 H 0.222 0.778 24 H 0.161 0.839 25 H 0.195 0.805 26 H 0.140 0.860 27 H 0.216 0.784 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 10.968 -14.323 0.001 18.040 hybrid contribution -1.254 0.451 0.006 1.333 sum 9.713 -13.871 0.007 16.934 Atomic orbital electron populations 1.69758 1.06947 1.29362 1.48936 1.25636 0.96269 1.01590 0.96633 0.85645 0.79105 0.79109 0.79695 1.18663 1.19142 1.18124 1.19299 0.79425 0.96514 1.49178 0.88065 1.40713 1.05237 1.03807 1.68519 1.20144 0.90940 0.88158 0.96127 1.21821 1.01844 0.91435 1.07428 1.22286 0.93018 0.99501 0.94430 1.20594 0.91873 0.92746 1.05884 1.17863 0.93489 0.90097 1.13612 1.21054 0.94360 0.97154 1.10811 1.22140 0.92510 0.90120 1.08887 1.41816 1.04960 1.09676 1.57194 0.72355 1.22099 0.93813 0.88355 1.07898 1.72577 1.31009 0.95281 1.08085 1.72730 1.04141 1.20932 1.25269 0.90773 0.77785 0.83873 0.80535 0.86018 0.78440 0.78693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.68 13.97 21.64 0.30 -50.38 15 2 C 0.00 0.04 5.50 84.86 0.47 0.51 15 3 Si 0.94 40.44 27.73 68.60 1.90 42.34 15 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 6 H -0.26 -10.63 6.52 99.48 0.65 -9.98 15 7 C -0.31 -16.69 10.03 84.04 0.84 -15.84 15 8 H 0.10 5.58 5.93 -2.91 -0.02 5.57 15 9 N -0.57 -28.19 5.24 -188.82 -0.99 -29.18 15 10 C 0.29 14.02 7.71 133.23 1.03 15.05 15 11 C -0.19 -8.04 9.40 22.63 0.21 -7.83 15 12 C -0.06 -2.25 9.69 22.70 0.22 -2.03 15 13 C 0.04 1.58 6.84 42.09 0.29 1.87 15 14 C -0.14 -4.35 6.10 -20.20 -0.12 -4.47 15 15 C -0.21 -5.94 10.64 22.34 0.24 -5.71 15 16 C -0.01 -0.11 11.91 83.14 0.99 0.88 15 17 N -0.54 -8.02 6.05 -193.93 -1.17 -9.19 15 18 H 0.44 2.69 8.96 -92.71 -0.83 1.86 15 19 C 0.01 0.29 11.36 83.56 0.95 1.24 15 20 N -0.23 -10.34 11.27 -48.30 -0.54 -10.88 15 21 N -0.37 -18.28 11.53 -55.04 -0.63 -18.91 15 22 H 0.28 14.56 8.31 -92.71 -0.77 13.79 15 23 H 0.39 18.48 5.88 -92.70 -0.54 17.93 15 24 H 0.14 5.93 6.04 -2.91 -0.02 5.91 15 25 H 0.18 4.24 7.11 -2.91 -0.02 4.22 15 26 H 0.12 3.78 8.06 -2.91 -0.02 3.76 15 27 H 0.20 2.10 8.06 -2.91 -0.02 2.08 15 28 H 0.20 2.68 7.32 -2.91 -0.02 2.66 15 Total: -1.00 -69.13 251.36 3.77 -65.37 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.21 Total: 27.18 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 5.11 Total: -16.34 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -3.04 Total: -118.55 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.90 Total: 42.34 kcal Total: -69.13 3.77 -65.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259347795.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.133 kcal (2) G-P(sol) polarization free energy of solvation -69.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds