Wall clock time and date at job start Mon Mar 30 2020 03:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37862 * 119.65588 * 2 1 4 4 C 1.38878 * 119.95843 * 180.02562 * 3 2 1 5 5 O 1.34833 * 133.42033 * 180.02562 * 4 3 2 6 6 C 1.34452 * 110.89666 * 179.97438 * 5 4 3 7 7 C 1.33986 * 110.15763 * 359.97438 * 6 5 4 8 8 C 1.40509 * 119.32029 * 359.93187 * 4 3 2 9 9 C 1.39386 * 120.15810 * 0.04472 * 8 4 3 10 10 C 1.37760 * 119.59520 * 0.02562 * 9 8 4 11 11 C 1.50703 * 119.86027 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47045 * 264.99864 * 11 10 9 13 13 C 1.50703 * 109.47045 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99879 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99985 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47276 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46703 * 120.00100 * 17 15 13 20 20 H 1.48501 * 109.47286 * 240.00145 * 17 15 13 21 21 H 1.09001 * 109.47372 * 270.02369 * 1 2 3 22 22 H 1.08996 * 109.46669 * 30.02676 * 1 2 3 23 23 H 1.08997 * 109.46722 * 150.02456 * 1 2 3 24 24 H 1.07996 * 120.01736 * 359.97113 * 3 2 1 25 25 H 1.08002 * 124.91868 * 180.02562 * 6 5 4 26 26 H 1.08004 * 126.90368 * 180.26569 * 7 6 5 27 27 H 1.08000 * 120.20195 * 179.97438 * 9 8 4 28 28 H 1.09010 * 109.46885 * 24.99838 * 11 10 9 29 29 H 1.08999 * 109.47432 * 144.99673 * 11 10 9 30 30 H 1.08994 * 109.46956 * 299.99934 * 12 11 10 31 31 H 1.09002 * 109.47198 * 60.00172 * 12 11 10 32 32 H 0.96997 * 119.99428 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1892 1.1980 0.0000 4 6 3.5779 1.2054 -0.0005 5 8 4.4995 2.1896 -0.0002 6 6 5.7442 1.6811 -0.0005 7 6 5.6959 0.3421 -0.0004 8 6 4.2724 -0.0161 0.0004 9 6 3.5709 -1.2205 0.0009 10 6 2.1934 -1.2055 -0.0001 11 6 1.4289 -2.5042 0.0010 12 6 1.0628 -2.8817 -1.4358 13 6 0.2988 -4.1807 -1.4347 14 1 0.0952 -4.6867 -0.5025 15 6 -0.1402 -4.7233 -2.6238 16 7 0.1082 -4.1074 -3.7590 17 14 -1.0865 -6.3338 -2.6225 18 1 -1.2326 -6.8210 -1.2274 19 1 -2.4313 -6.1181 -3.2144 20 1 -0.3485 -7.3423 -3.4247 21 1 -0.3634 0.0004 1.0277 22 1 -0.3632 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6438 2.1302 -0.0005 25 1 6.6514 2.2671 0.0000 26 1 6.5356 -0.3371 0.0034 27 1 4.1040 -2.1598 0.0012 28 1 2.0470 -3.2893 0.4368 29 1 0.5187 -2.3896 0.5897 30 1 0.4448 -2.0967 -1.8714 31 1 1.9729 -2.9964 -2.0245 32 1 -0.2009 -4.4889 -4.5954 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259565998.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:15 Heat of formation + Delta-G solvation = -11.510753 kcal Electronic energy + Delta-G solvation = -15123.525944 eV Core-core repulsion = 12627.903278 eV Total energy + Delta-G solvation = -2495.622666 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.29878 -39.69141 -35.75509 -34.23861 -33.63487 -31.76117 -30.42832 -27.47551 -26.87221 -24.08423 -22.79707 -22.09122 -21.47029 -18.56510 -18.42980 -17.42002 -17.01306 -16.50952 -16.22038 -15.39332 -15.05790 -14.70448 -14.21577 -14.16108 -13.87295 -13.53766 -13.36134 -13.04251 -12.89172 -12.78591 -12.37501 -12.26884 -11.97406 -11.61512 -11.53288 -11.12699 -10.98710 -10.54606 -9.27285 -9.02210 -8.18235 -6.30038 0.00201 0.39593 1.41471 1.41742 1.49168 1.55209 1.91423 2.42028 2.71045 3.14923 3.58359 3.78806 3.96086 4.10027 4.26200 4.34120 4.48041 4.63983 4.72409 4.78793 4.82864 4.90919 4.95153 5.14552 5.22010 5.25061 5.38986 5.52568 5.54137 5.62144 5.73116 5.86180 5.88455 6.23315 6.26453 6.87320 7.39480 8.93506 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.044046 B = 0.005576 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.551265 B = 5020.465331 C = 5303.642025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.064 4.064 3 C -0.113 4.113 4 C 0.022 3.978 5 O -0.208 6.208 6 C 0.014 3.986 7 C -0.228 4.228 8 C -0.156 4.156 9 C -0.089 4.089 10 C -0.096 4.096 11 C -0.061 4.061 12 C 0.038 3.962 13 C -0.540 4.540 14 H 0.063 0.937 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.260 1.260 19 H -0.278 1.278 20 H -0.280 1.280 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.152 0.848 25 H 0.256 0.744 26 H 0.177 0.823 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.072 0.928 30 H -0.001 1.001 31 H -0.018 1.018 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.946 10.989 8.924 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.131 4.131 4 C -0.025 4.025 5 O -0.110 6.110 6 C -0.050 4.050 7 C -0.247 4.247 8 C -0.157 4.157 9 C -0.107 4.107 10 C -0.096 4.096 11 C -0.099 4.099 12 C 0.001 3.999 13 C -0.578 4.578 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.789 3.211 18 H -0.184 1.184 19 H -0.204 1.204 20 H -0.206 1.206 21 H 0.109 0.891 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.170 0.830 25 H 0.272 0.728 26 H 0.195 0.805 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.017 0.983 31 H 0.001 0.999 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.841 11.250 8.755 16.270 hybrid contribution -0.232 -1.121 -0.534 1.263 sum 7.609 10.130 8.221 15.103 Atomic orbital electron populations 1.20906 0.89257 1.03569 1.03479 1.19778 0.97292 0.91108 0.98275 1.19907 0.88439 0.99134 1.05637 1.19761 0.91602 0.86119 1.04976 1.83973 1.15324 1.34933 1.76734 1.24836 0.86065 0.94188 0.99884 1.22848 0.94469 0.96689 1.10708 1.20303 0.95057 0.93767 1.06532 1.20533 0.93211 0.96878 1.00087 1.20052 0.93643 0.95825 1.00108 1.20535 0.98678 0.92172 0.98482 1.18918 0.94439 0.95109 0.91453 1.21725 1.35134 1.07691 0.93225 0.91834 1.25976 0.97239 1.01353 0.95173 1.70126 1.47811 1.41140 0.98425 0.85399 0.78108 0.78883 0.78661 1.18365 1.20356 1.20612 0.89144 0.89926 0.92020 0.83031 0.72823 0.80523 0.85517 0.92143 0.90914 0.98284 0.99934 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 9.19 71.24 0.65 -2.89 16 2 C -0.06 -2.24 5.88 -19.84 -0.12 -2.35 16 3 C -0.11 -3.57 9.69 22.33 0.22 -3.35 16 4 C 0.02 0.72 7.41 22.98 0.17 0.89 16 5 O -0.21 -5.76 10.58 -9.20 -0.10 -5.86 16 6 C 0.01 0.29 11.96 66.85 0.80 1.08 16 7 C -0.23 -5.68 11.14 23.54 0.26 -5.42 16 8 C -0.16 -5.22 6.40 -20.21 -0.13 -5.35 16 9 C -0.09 -3.28 9.72 22.43 0.22 -3.06 16 10 C -0.10 -3.74 5.13 -19.86 -0.10 -3.84 16 11 C -0.06 -2.62 4.58 29.85 0.14 -2.48 16 12 C 0.04 2.03 4.76 29.85 0.14 2.17 16 13 C -0.54 -30.72 9.11 25.60 0.23 -30.49 16 14 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 15 C 0.00 0.01 5.46 84.65 0.46 0.47 16 16 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 17 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 22 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 23 H 0.06 2.26 5.38 -2.39 -0.01 2.25 16 24 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 25 H 0.26 2.15 8.06 -2.91 -0.02 2.13 16 26 H 0.18 3.39 8.06 -2.91 -0.02 3.36 16 27 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.06 2.49 8.05 -2.38 -0.02 2.47 16 29 H 0.07 2.91 6.96 -2.39 -0.02 2.89 16 30 H 0.00 -0.07 6.90 -2.39 -0.02 -0.08 16 31 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 32 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -69.47 275.07 6.27 -63.20 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.11 Total: 8.20 kcal Atomic # 6 Polarization: -57.56 SS G_CDS: 2.95 Total: -54.61 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.28 Total: -57.24 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.10 Total: -5.86 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.47 6.27 -63.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259565998.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.691 kcal (2) G-P(sol) polarization free energy of solvation -69.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds