Wall clock time and date at job start Mon Mar 30 2020 03:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34444 * 124.92502 * 2 1 4 4 C 1.34812 * 110.88889 * 179.97438 * 3 2 1 5 5 C 1.38942 * 133.49744 * 180.02562 * 4 3 2 6 6 C 1.37842 * 119.81955 * 179.97438 * 5 4 3 7 7 C 1.50700 * 119.65856 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47081 * 269.97610 * 7 6 5 9 9 H 1.07999 * 119.99906 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99707 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00743 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99947 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47217 * 89.99625 * 12 10 8 14 14 H 1.48500 * 109.47405 * 210.00060 * 12 10 8 15 15 H 1.48501 * 109.46801 * 329.99575 * 12 10 8 16 16 C 1.38749 * 120.68566 * 359.97438 * 6 5 4 17 17 C 1.36734 * 120.41396 * 0.26667 * 16 6 5 18 18 C 1.39406 * 119.71990 * 359.48609 * 17 16 6 19 19 C 1.34002 * 124.91827 * 179.97438 * 2 1 3 20 20 C 1.50700 * 126.90711 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.47094 * 0.02823 * 1 2 3 22 22 H 1.09004 * 109.46892 * 120.02171 * 1 2 3 23 23 H 1.09000 * 109.47502 * 240.02482 * 1 2 3 24 24 H 1.07998 * 120.09021 * 359.97349 * 5 4 3 25 25 H 1.09004 * 109.46972 * 29.97564 * 7 6 5 26 26 H 1.08998 * 109.46960 * 149.97275 * 7 6 5 27 27 H 0.96998 * 120.00747 * 180.02562 * 11 10 8 28 28 H 1.08002 * 119.78919 * 179.97438 * 16 6 5 29 29 H 1.08003 * 120.14283 * 179.71962 * 17 16 6 30 30 H 1.09001 * 109.46751 * 90.02780 * 20 19 2 31 31 H 1.08998 * 109.46729 * 210.02118 * 20 19 2 32 32 H 1.08998 * 109.47250 * 330.02473 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1023 0.0000 4 6 3.5846 0.7753 0.0006 5 6 4.7569 1.5212 0.0013 6 6 5.9771 0.8801 0.0023 7 6 7.2463 1.6927 0.0036 8 6 7.6710 1.9633 -1.4168 9 1 7.0811 1.5844 -2.2383 10 6 8.8132 2.6937 -1.6675 11 7 9.5319 3.1547 -0.6672 12 14 9.3401 3.0286 -3.4281 13 1 8.7252 4.2966 -3.8961 14 1 10.8194 3.1438 -3.4888 15 1 8.8946 1.9113 -4.2990 16 6 6.0491 -0.5055 0.0031 17 6 4.9074 -1.2579 -0.0025 18 6 3.6641 -0.6273 0.0017 19 6 2.2741 -1.0988 0.0005 20 6 1.8040 -2.5306 0.0006 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5142 -0.8898 23 1 -0.3634 -0.5134 0.8902 24 1 4.7121 2.6002 0.0010 25 1 7.0719 2.6382 0.5171 26 1 8.0315 1.1391 0.5185 27 1 10.3352 3.6688 -0.8435 28 1 7.0129 -0.9927 0.0035 29 1 4.9685 -2.3362 -0.0064 30 1 1.6915 -2.8761 -1.0271 31 1 2.5359 -3.1532 0.5151 32 1 0.8447 -2.5981 0.5137 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259617173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:58 Heat of formation + Delta-G solvation = 4.192013 kcal Electronic energy + Delta-G solvation = -15072.009984 eV Core-core repulsion = 12577.068241 eV Total energy + Delta-G solvation = -2494.941743 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.02642 -37.63881 -34.21972 -33.23548 -31.31143 -30.09029 -29.00675 -27.28168 -25.34603 -22.85393 -22.45846 -20.34337 -19.16994 -16.47981 -16.38334 -16.21050 -15.93166 -14.78155 -14.20953 -13.64393 -13.39224 -13.27089 -13.08115 -12.93908 -12.60274 -12.43920 -12.16243 -11.81654 -11.30788 -11.27585 -11.08616 -10.76704 -10.59361 -10.32152 -9.68055 -9.54329 -9.05369 -8.44489 -7.96651 -7.38991 -6.06209 -4.10566 1.46920 2.00960 2.69822 3.10796 3.30264 3.36388 3.40838 4.32239 4.49296 4.69709 5.02857 5.05808 5.24677 5.28810 5.35269 5.41102 5.61215 5.66953 5.78776 5.87138 5.89960 5.95626 6.12168 6.27500 6.51093 6.74698 6.88190 7.02097 7.09582 7.27514 7.49024 7.71715 7.79055 7.89289 8.27647 8.94387 9.53517 11.03457 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.042853 B = 0.005670 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.239366 B = 4937.416552 C = 5092.465167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.006 3.994 3 O -0.198 6.198 4 C 0.057 3.943 5 C -0.120 4.120 6 C -0.005 4.005 7 C 0.049 3.951 8 C -0.513 4.513 9 H 0.058 0.942 10 C 0.059 3.941 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.273 1.273 16 C -0.130 4.130 17 C -0.079 4.079 18 C -0.152 4.152 19 C -0.177 4.177 20 C -0.076 4.076 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.127 0.873 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.263 0.737 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.786 -8.607 1.985 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.042 4.042 3 O -0.101 6.101 4 C 0.010 3.990 5 C -0.139 4.139 6 C -0.005 4.005 7 C 0.012 3.988 8 C -0.552 4.552 9 H 0.076 0.924 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.724 3.276 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.198 1.198 16 C -0.148 4.148 17 C -0.097 4.097 18 C -0.153 4.153 19 C -0.178 4.178 20 C -0.132 4.132 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.145 0.855 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.720 -8.240 2.027 16.991 hybrid contribution 0.472 0.193 -0.999 1.121 sum -14.248 -8.048 1.028 16.396 Atomic orbital electron populations 1.20301 0.85562 1.03841 1.03159 1.21890 0.93502 0.83830 1.04937 1.83893 1.15496 1.33584 1.77081 1.19667 0.82556 0.93574 1.03155 1.19871 0.87320 0.99725 1.06943 1.20502 0.95619 0.93906 0.90502 1.18395 0.87951 0.94435 0.98004 1.21043 1.08857 1.33932 0.91329 0.92373 1.24997 0.96312 0.95587 0.97316 1.69950 1.16264 1.36315 1.30714 0.86521 0.77661 0.78779 0.84677 1.20546 1.21113 1.19778 1.20790 0.97926 0.93814 1.02285 1.20142 0.90320 0.99088 1.00133 1.19614 0.93289 0.92997 1.09424 1.20757 0.91287 0.95764 1.10035 1.20086 1.00643 0.90770 1.01731 0.90631 0.89908 0.89913 0.85476 0.94995 0.94783 0.92769 0.85580 0.86588 0.91672 0.91647 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 9.86 36.01 0.35 -0.34 16 2 C 0.01 0.08 7.23 -35.80 -0.26 -0.17 16 3 O -0.20 -3.65 10.58 3.91 0.04 -3.60 16 4 C 0.06 1.15 7.42 -38.47 -0.29 0.86 16 5 C -0.12 -2.56 9.70 -39.47 -0.38 -2.94 16 6 C -0.01 -0.11 5.07 -104.58 -0.53 -0.64 16 7 C 0.05 1.26 5.08 -29.04 -0.15 1.11 16 8 C -0.51 -14.40 9.09 -34.44 -0.31 -14.71 16 9 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 12 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 16 C -0.13 -2.59 9.62 -39.94 -0.38 -2.97 16 17 C -0.08 -1.41 10.05 -39.69 -0.40 -1.81 16 18 C -0.15 -2.83 6.38 -105.16 -0.67 -3.50 16 19 C -0.18 -2.72 6.35 -102.66 -0.65 -3.37 16 20 C -0.08 -0.84 10.18 36.01 0.37 -0.47 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 25 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 26 H 0.03 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.55 7.85 -51.93 -0.41 0.14 16 LS Contribution 281.17 15.07 4.24 4.24 Total: -1.00 -31.01 281.17 -7.58 -38.59 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.17 Total: -2.85 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -3.40 Total: -27.38 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.74 Total: -25.54 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: 0.04 Total: -3.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.01 -7.58 -38.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259617173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.781 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds