Wall clock time and date at job start Mon Mar 30 2020 03:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34444 * 124.92502 * 2 1 4 4 C 1.34812 * 110.88889 * 179.97438 * 3 2 1 5 5 C 1.38942 * 133.49744 * 180.02562 * 4 3 2 6 6 C 1.37842 * 119.81955 * 179.97438 * 5 4 3 7 7 C 1.50700 * 119.65856 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47081 * 269.97610 * 7 6 5 9 9 H 1.07999 * 119.99906 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99707 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00743 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99947 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47217 * 89.99625 * 12 10 8 14 14 H 1.48500 * 109.47405 * 210.00060 * 12 10 8 15 15 H 1.48501 * 109.46801 * 329.99575 * 12 10 8 16 16 C 1.38749 * 120.68566 * 359.97438 * 6 5 4 17 17 C 1.36734 * 120.41396 * 0.26667 * 16 6 5 18 18 C 1.39406 * 119.71990 * 359.48609 * 17 16 6 19 19 C 1.34002 * 124.91827 * 179.97438 * 2 1 3 20 20 C 1.50700 * 126.90711 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.47094 * 0.02823 * 1 2 3 22 22 H 1.09004 * 109.46892 * 120.02171 * 1 2 3 23 23 H 1.09000 * 109.47502 * 240.02482 * 1 2 3 24 24 H 1.07998 * 120.09021 * 359.97349 * 5 4 3 25 25 H 1.09004 * 109.46972 * 29.97564 * 7 6 5 26 26 H 1.08998 * 109.46960 * 149.97275 * 7 6 5 27 27 H 0.96998 * 120.00747 * 180.02562 * 11 10 8 28 28 H 1.08002 * 119.78919 * 179.97438 * 16 6 5 29 29 H 1.08003 * 120.14283 * 179.71962 * 17 16 6 30 30 H 1.09001 * 109.46751 * 90.02780 * 20 19 2 31 31 H 1.08998 * 109.46729 * 210.02118 * 20 19 2 32 32 H 1.08998 * 109.47250 * 330.02473 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1023 0.0000 4 6 3.5846 0.7753 0.0006 5 6 4.7569 1.5212 0.0013 6 6 5.9771 0.8801 0.0023 7 6 7.2463 1.6927 0.0036 8 6 7.6710 1.9633 -1.4168 9 1 7.0811 1.5844 -2.2383 10 6 8.8132 2.6937 -1.6675 11 7 9.5319 3.1547 -0.6672 12 14 9.3401 3.0286 -3.4281 13 1 8.7252 4.2966 -3.8961 14 1 10.8194 3.1438 -3.4888 15 1 8.8946 1.9113 -4.2990 16 6 6.0491 -0.5055 0.0031 17 6 4.9074 -1.2579 -0.0025 18 6 3.6641 -0.6273 0.0017 19 6 2.2741 -1.0988 0.0005 20 6 1.8040 -2.5306 0.0006 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5142 -0.8898 23 1 -0.3634 -0.5134 0.8902 24 1 4.7121 2.6002 0.0010 25 1 7.0719 2.6382 0.5171 26 1 8.0315 1.1391 0.5185 27 1 10.3352 3.6688 -0.8435 28 1 7.0129 -0.9927 0.0035 29 1 4.9685 -2.3362 -0.0064 30 1 1.6915 -2.8761 -1.0271 31 1 2.5359 -3.1532 0.5151 32 1 0.8447 -2.5981 0.5137 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259617173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:57 Heat of formation + Delta-G solvation = -12.542917 kcal Electronic energy + Delta-G solvation = -15072.735665 eV Core-core repulsion = 12577.068241 eV Total energy + Delta-G solvation = -2495.667424 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.38536 -39.20534 -35.59388 -35.05976 -32.91128 -31.52041 -30.32054 -28.71655 -26.80385 -24.69138 -23.93328 -21.84919 -20.53141 -18.54029 -17.87435 -17.64507 -17.26787 -16.65373 -15.81811 -15.04284 -14.67320 -14.53882 -14.28491 -14.08717 -13.89849 -13.64083 -13.34618 -13.27266 -13.02725 -12.84977 -12.61167 -12.51819 -12.32559 -12.00624 -11.58530 -11.46150 -10.62959 -10.50974 -9.49089 -8.81482 -8.21580 -6.36228 0.05101 0.45426 1.37746 1.40001 1.41664 1.51940 1.81686 2.38320 2.83301 3.08479 3.50755 3.73783 3.99531 4.18410 4.24937 4.36613 4.47030 4.56502 4.71743 4.78143 4.81818 4.90778 4.99442 5.08470 5.14694 5.22873 5.30507 5.31857 5.46778 5.68994 5.70809 5.82359 5.92381 6.12664 6.30401 6.75171 7.32370 8.86859 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.042853 B = 0.005670 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.239366 B = 4937.416552 C = 5092.465167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.004 3.996 3 O -0.214 6.214 4 C 0.033 3.967 5 C -0.133 4.133 6 C -0.032 4.032 7 C 0.059 3.941 8 C -0.532 4.532 9 H 0.053 0.947 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.966 3.034 13 H -0.273 1.273 14 H -0.276 1.276 15 H -0.266 1.266 16 C -0.141 4.141 17 C -0.067 4.067 18 C -0.158 4.158 19 C -0.186 4.186 20 C -0.073 4.073 21 H 0.080 0.920 22 H 0.107 0.893 23 H 0.110 0.890 24 H 0.116 0.884 25 H 0.006 0.994 26 H 0.016 0.984 27 H 0.267 0.733 28 H 0.133 0.867 29 H 0.155 0.845 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.041 -10.646 1.029 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.043 4.043 3 O -0.118 6.118 4 C -0.014 4.014 5 C -0.151 4.151 6 C -0.032 4.032 7 C 0.022 3.978 8 C -0.570 4.570 9 H 0.071 0.929 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.790 3.210 13 H -0.198 1.198 14 H -0.201 1.201 15 H -0.191 1.191 16 C -0.159 4.159 17 C -0.085 4.085 18 C -0.159 4.159 19 C -0.187 4.187 20 C -0.129 4.129 21 H 0.099 0.901 22 H 0.126 0.874 23 H 0.128 0.872 24 H 0.134 0.866 25 H 0.024 0.976 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.173 0.827 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.990 -10.288 1.076 19.891 hybrid contribution 1.014 0.803 -0.646 1.446 sum -15.976 -9.484 0.430 18.584 Atomic orbital electron populations 1.20598 0.81433 1.05058 1.05582 1.23035 0.95642 0.82740 1.02877 1.83895 1.14968 1.35632 1.77273 1.19656 0.83034 0.94473 1.04187 1.19751 0.88152 0.99431 1.07801 1.20183 0.94345 0.94912 0.93748 1.18120 0.89420 0.93559 0.96692 1.21331 1.09199 1.34238 0.92203 0.92907 1.25893 0.96204 0.95127 1.01842 1.70066 1.16763 1.36904 1.33031 0.85435 0.77551 0.78814 0.79203 1.19843 1.20132 1.19055 1.20866 0.99309 0.92806 1.02879 1.20457 0.89210 1.00774 0.98046 1.20152 0.95319 0.92500 1.07915 1.21249 0.89235 0.98213 1.10032 1.20223 1.02078 0.87596 1.03053 0.90135 0.87428 0.87180 0.86565 0.97614 0.96579 0.92412 0.84921 0.82749 0.90398 0.91153 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 9.86 71.24 0.70 -0.36 16 2 C 0.00 0.10 7.23 24.72 0.18 0.28 16 3 O -0.21 -7.81 10.58 -8.92 -0.09 -7.90 16 4 C 0.03 1.35 7.42 22.99 0.17 1.52 16 5 C -0.13 -5.97 9.70 22.34 0.22 -5.76 16 6 C -0.03 -1.49 5.07 -19.84 -0.10 -1.59 16 7 C 0.06 3.23 5.08 29.10 0.15 3.38 16 8 C -0.53 -30.99 9.09 25.60 0.23 -30.76 16 9 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 10 C 0.01 0.45 5.46 84.65 0.46 0.92 16 11 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 12 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 C -0.14 -5.68 9.62 22.04 0.21 -5.46 16 17 C -0.07 -2.31 10.05 22.20 0.22 -2.09 16 18 C -0.16 -5.66 6.38 -20.21 -0.13 -5.79 16 19 C -0.19 -5.15 6.35 -18.59 -0.12 -5.27 16 20 C -0.07 -1.28 10.18 71.24 0.73 -0.55 16 21 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.12 5.24 8.06 -2.91 -0.02 5.22 16 25 H 0.01 0.32 8.08 -2.38 -0.02 0.31 16 26 H 0.02 0.91 8.08 -2.39 -0.02 0.89 16 27 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 29 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.09 7.85 -2.39 -0.02 1.08 16 Total: -1.00 -69.61 281.17 6.24 -63.36 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 1.10 Total: 5.15 kcal Atomic # 6 Polarization: -54.45 SS G_CDS: 2.92 Total: -51.53 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.09 Total: -7.90 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -69.61 6.24 -63.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259617173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.820 kcal (2) G-P(sol) polarization free energy of solvation -69.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds