Wall clock time and date at job start Mon Mar 30 2020 03:11:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.39796 * 126.44566 * 2 1
4 4 C 1.35603 * 107.86681 * 179.86810 * 3 2 1
5 5 N 1.35978 * 108.84583 * 0.40341 * 4 3 2
6 6 H 0.96995 * 125.69040 * 179.71329 * 5 4 3
7 7 C 1.37483 * 108.62645 * 359.74675 * 5 4 3
8 8 C 1.46840 * 126.22839 * 179.97438 * 7 5 4
9 9 C 1.40980 * 120.41546 * 335.02470 * 8 7 5
10 10 N 1.31529 * 118.81483 * 179.97438 * 9 8 7
11 11 C 1.34143 * 119.60279 * 359.97438 * 10 9 8
12 12 C 1.40661 * 119.57400 * 180.02562 * 11 10 9
13 13 H 1.08000 * 120.00481 * 359.97438 * 12 11 10
14 14 C 1.40087 * 119.99880 * 179.97438 * 12 11 10
15 15 N 1.30713 * 119.99820 * 359.97438 * 14 12 11
16 16 Si 1.86795 * 119.99933 * 180.02562 * 14 12 11
17 17 H 1.48497 * 109.47299 * 90.00016 * 16 14 12
18 18 H 1.48508 * 109.46717 * 209.99800 * 16 14 12
19 19 H 1.48498 * 109.47234 * 329.99538 * 16 14 12
20 20 N 1.33949 * 120.84506 * 0.02562 * 11 10 9
21 21 N 1.28762 * 121.26183 * 359.68518 * 20 11 10
22 22 H 1.09002 * 109.47152 * 269.68607 * 1 2 3
23 23 H 1.09001 * 109.46980 * 149.68707 * 1 2 3
24 24 H 1.09004 * 109.47113 * 29.68688 * 1 2 3
25 25 H 1.08001 * 126.06076 * 359.97438 * 3 2 1
26 26 H 1.08003 * 125.57725 * 180.11249 * 4 3 2
27 27 H 1.07999 * 120.59540 * 359.97438 * 9 8 7
28 28 H 0.96997 * 119.99705 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3375 1.1246 0.0000
4 6 3.6229 0.6925 0.0030
5 7 3.6292 -0.6672 -0.0042
6 1 4.4196 -1.2294 -0.0079
7 6 2.3285 -1.1124 -0.0061
8 6 1.8910 -2.5141 -0.0139
9 6 2.7301 -3.5209 -0.5334
10 7 2.3068 -4.7661 -0.5244
11 6 1.0950 -5.0504 -0.0244
12 6 0.6431 -6.3825 -0.0145
13 1 1.2704 -7.1685 -0.4081
14 6 -0.6207 -6.6895 0.5060
15 7 -1.3798 -5.7382 0.9829
16 14 -1.2205 -8.4585 0.5198
17 1 -0.8133 -9.1094 1.7909
18 1 -2.7010 -8.4800 0.4048
19 1 -0.6244 -9.1923 -0.6253
20 7 0.3097 -4.0821 0.4655
21 7 0.6933 -2.8530 0.4780
22 1 -0.3633 -0.0056 1.0277
23 1 -0.3633 -0.8872 -0.5187
24 1 -0.3633 0.8928 -0.5090
25 1 2.0129 2.1546 -0.0004
26 1 4.4983 1.3250 0.0055
27 1 3.7032 -3.2740 -0.9317
28 1 -2.2550 -5.9508 1.3429
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259661281.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:28
Heat of formation + Delta-G solvation = 99.695452 kcal
Electronic energy + Delta-G solvation = -15025.062972 eV
Core-core repulsion = 12463.014977 eV
Total energy + Delta-G solvation = -2562.047995 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.086 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.48936 -39.27659 -34.30460 -33.16440 -31.89446 -31.45940 -28.70503 -26.91838
-25.32023 -23.78309 -22.54904 -20.22985 -18.62964 -18.27192 -17.38714 -16.65912
-15.32191 -14.56306 -14.16227 -13.89856 -13.39343 -13.10343 -12.92265 -12.46954
-11.98522 -11.58380 -11.55563 -11.46869 -11.30011 -10.88282 -10.54950 -10.32528
-10.14712 -9.81960 -9.68329 -8.78485 -8.18110 -7.55863 -7.10997 -6.89525
-5.00031 1.92278 2.40431 2.84551 2.92849 2.98189 3.09657 3.55619
3.69509 3.74347 4.44619 5.30680 5.44541 5.50279 5.54623 5.70343
5.83543 6.01562 6.08057 6.30539 6.54229 6.58257 6.72309 6.78111
6.91383 6.96252 7.15745 7.59456 7.71883 7.81348 8.04629 8.15460
8.20680 8.81354 9.87557 10.47580
Molecular weight = 230.09amu
Principal moments of inertia in cm(-1)
A = 0.055604 B = 0.006502 C = 0.005895
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 503.436550 B = 4305.662780 C = 4748.487006
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C -0.153 4.153
3 C -0.196 4.196
4 C -0.034 4.034
5 N -0.554 5.554
6 H 0.409 0.591
7 C 0.109 3.891
8 C -0.101 4.101
9 C 0.142 3.858
10 N -0.538 5.538
11 C 0.302 3.698
12 C -0.364 4.364
13 H 0.100 0.900
14 C 0.055 3.945
15 N -0.691 5.691
16 Si 0.928 3.072
17 H -0.264 1.264
18 H -0.271 1.271
19 H -0.257 1.257
20 N -0.275 5.275
21 N -0.156 5.156
22 H 0.058 0.942
23 H 0.065 0.935
24 H 0.045 0.955
25 H 0.128 0.872
26 H 0.157 0.843
27 H 0.137 0.863
28 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.401 5.111 -1.051 6.827
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.160 4.160
3 C -0.222 4.222
4 C -0.165 4.165
5 N -0.150 5.150
6 H 0.245 0.755
7 C -0.006 4.006
8 C -0.247 4.247
9 C -0.042 4.042
10 N -0.260 5.260
11 C 0.069 3.931
12 C -0.400 4.400
13 H 0.118 0.882
14 C -0.175 4.175
15 N -0.311 5.311
16 Si 0.751 3.249
17 H -0.189 1.189
18 H -0.195 1.195
19 H -0.181 1.181
20 N -0.138 5.138
21 N -0.014 5.014
22 H 0.077 0.923
23 H 0.084 0.916
24 H 0.064 0.936
25 H 0.146 0.854
26 H 0.174 0.826
27 H 0.154 0.846
28 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 3.357 4.651 -0.582 5.765
hybrid contribution 1.172 -0.609 -0.333 1.363
sum 4.529 4.042 -0.916 6.139
Atomic orbital electron populations
1.20000 0.90144 1.00880 1.01351 1.19764 0.95392 0.90969 1.09848
1.20598 0.92098 0.98045 1.11428 1.21635 0.98792 0.82863 1.13257
1.41861 1.07093 1.06820 1.59200 0.75511 1.18304 0.82348 0.91332
1.08570 1.20216 0.98635 0.91398 1.14474 1.23314 0.97978 0.89797
0.93134 1.69168 1.17106 1.19073 1.20628 1.21213 0.85679 0.96137
0.90116 1.19354 0.99568 0.91156 1.29892 0.88216 1.26272 0.96391
1.00686 0.94104 1.70061 1.07745 1.33873 1.19454 0.85967 0.78568
0.80243 0.80166 1.18900 1.19542 1.18059 1.75065 1.25730 0.93180
1.19868 1.73908 1.09620 1.13011 1.04910 0.92309 0.91619 0.93609
0.85372 0.82609 0.84586 0.90216
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.24 9.64 36.01 0.35 -0.90 15
2 C -0.15 -2.95 6.21 -104.02 -0.65 -3.60 15
3 C -0.20 -3.18 10.76 -39.94 -0.43 -3.61 15
4 C -0.03 -0.49 11.91 -16.66 -0.20 -0.69 15
5 N -0.55 -8.76 6.03 -9.15 -0.06 -8.81 15
6 H 0.41 5.22 8.79 -40.82 -0.36 4.87 15
7 C 0.11 2.19 6.89 -81.84 -0.56 1.63 15
8 C -0.10 -2.37 6.71 -82.47 -0.55 -2.93 15
9 C 0.14 3.20 11.03 -16.64 -0.18 3.02 15
10 N -0.54 -13.83 10.45 -12.21 -0.13 -13.96 15
11 C 0.30 8.40 7.41 -157.62 -1.17 7.23 15
12 C -0.36 -9.51 9.35 -37.97 -0.35 -9.86 15
13 H 0.10 2.44 7.85 -52.49 -0.41 2.03 15
14 C 0.05 1.32 5.50 -17.33 -0.10 1.23 15
15 N -0.69 -17.58 11.42 55.55 0.63 -16.95 15
16 Si 0.93 17.38 29.56 -169.99 -5.02 12.36 15
17 H -0.26 -4.87 7.11 56.52 0.40 -4.46 15
18 H -0.27 -4.92 7.11 56.52 0.40 -4.51 15
19 H -0.26 -4.73 7.11 56.52 0.40 -4.32 15
20 N -0.28 -7.84 9.04 30.79 0.28 -7.56 15
21 N -0.16 -4.13 9.91 33.44 0.33 -3.80 15
22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15
23 H 0.06 1.38 7.11 -51.93 -0.37 1.01 15
24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15
25 H 0.13 1.76 8.06 -52.49 -0.42 1.34 15
26 H 0.16 1.62 8.06 -52.48 -0.42 1.19 15
27 H 0.14 2.44 7.89 -52.49 -0.41 2.03 15
28 H 0.29 6.45 8.29 -40.82 -0.34 6.11 15
LS Contribution 255.48 15.07 3.85 3.85
Total: -1.00 -30.77 255.48 -6.34 -37.10
By element:
Atomic # 1 Polarization: 8.63 SS G_CDS: -2.38 Total: 6.25 kcal
Atomic # 6 Polarization: -4.64 SS G_CDS: -3.85 Total: -8.48 kcal
Atomic # 7 Polarization: -52.14 SS G_CDS: 1.06 Total: -51.08 kcal
Atomic # 14 Polarization: 17.38 SS G_CDS: -5.02 Total: 12.36 kcal
Total LS contribution 3.85 Total: 3.85 kcal
Total: -30.77 -6.34 -37.10 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259661281.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.799 kcal
(2) G-P(sol) polarization free energy of solvation -30.766 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.033 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal
(6) G-S(sol) free energy of system = (1) + (5) 99.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds