Wall clock time and date at job start Mon Mar 30 2020 03:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39230 * 125.61569 * 2 1 4 4 C 1.38227 * 107.65802 * 180.15653 * 3 2 1 5 5 C 1.47251 * 126.49272 * 179.87763 * 4 3 2 6 6 C 1.40468 * 119.92675 * 179.73109 * 5 4 3 7 7 N 1.31343 * 120.09644 * 179.74605 * 6 5 4 8 8 C 1.34199 * 119.92726 * 0.51121 * 7 6 5 9 9 C 1.40770 * 120.07785 * 179.74453 * 8 7 6 10 10 H 1.08002 * 119.99917 * 185.88342 * 9 8 7 11 11 C 1.40124 * 120.00015 * 5.61129 * 9 8 7 12 12 N 1.30701 * 120.00290 * 353.95482 * 11 9 8 13 13 Si 1.86806 * 119.99893 * 173.95874 * 11 9 8 14 14 H 1.48498 * 109.47173 * 94.98332 * 13 11 9 15 15 H 1.48494 * 109.46946 * 214.98279 * 13 11 9 16 16 H 1.48496 * 109.46923 * 334.98142 * 13 11 9 17 17 C 1.41091 * 119.84018 * 359.46789 * 8 7 6 18 18 N 1.31444 * 119.91051 * 0.27516 * 17 8 7 19 19 N 1.36653 * 107.02099 * 359.61435 * 4 3 2 20 20 H 0.97003 * 126.13732 * 180.26405 * 19 4 3 21 21 N 1.31004 * 125.60951 * 179.72486 * 2 1 3 22 22 H 1.09003 * 109.46930 * 270.25461 * 1 2 3 23 23 H 1.09008 * 109.47259 * 30.25095 * 1 2 3 24 24 H 1.09002 * 109.47826 * 150.25361 * 1 2 3 25 25 H 1.08001 * 126.17214 * 0.03175 * 3 2 1 26 26 H 1.08002 * 119.94799 * 0.02562 * 6 5 4 27 27 H 0.97002 * 120.00060 * 180.02562 * 12 11 9 28 28 H 1.08004 * 120.04258 * 180.25767 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3177 1.1319 0.0000 4 6 3.6327 0.7057 -0.0036 5 6 4.8307 1.5618 -0.0074 6 6 6.1087 0.9788 -0.0051 7 7 7.1795 1.7392 -0.0136 8 6 7.0520 3.0752 -0.0140 9 6 8.1977 3.8932 -0.0176 10 1 8.0967 4.9642 0.0779 11 6 9.4693 3.3174 -0.1394 12 7 9.6016 2.0172 -0.1307 13 14 10.9757 4.4083 -0.3140 14 1 11.5893 4.6224 1.0212 15 1 11.9602 3.7527 -1.2118 16 1 10.5750 5.7169 -0.8903 17 6 5.7670 3.6578 -0.0168 18 7 4.6996 2.8907 -0.0134 19 7 3.6103 -0.6606 0.0031 20 1 4.3843 -1.2454 0.0062 21 7 2.2697 -1.0651 0.0051 22 1 -0.3633 0.0046 1.0277 23 1 -0.3634 0.8878 -0.5178 24 1 -0.3635 -0.8922 -0.5099 25 1 1.9802 2.1578 0.0005 26 1 6.2108 -0.0964 -0.0010 27 1 10.4820 1.6186 -0.2146 28 1 5.6606 4.7325 -0.0214 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259665762.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:33 Heat of formation + Delta-G solvation = 99.262183 kcal Electronic energy + Delta-G solvation = -14703.529571 eV Core-core repulsion = 12141.462788 eV Total energy + Delta-G solvation = -2562.066783 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.36151 -38.87128 -34.44665 -32.60935 -32.32064 -30.80809 -28.91476 -27.44336 -25.98552 -22.97001 -22.53546 -20.10463 -19.14865 -17.85255 -17.27516 -16.13712 -15.12944 -14.53521 -14.38352 -14.30962 -13.18106 -13.02045 -12.91846 -12.51749 -12.39659 -12.35600 -11.72639 -11.57870 -11.51114 -10.99738 -10.57108 -10.15862 -10.08227 -9.73232 -9.38675 -8.99049 -8.38157 -7.69536 -7.50288 -6.81877 -4.93924 1.76825 2.62635 2.81121 2.86261 2.90739 3.02949 3.35883 3.55811 3.61831 4.42927 5.07678 5.34396 5.47088 5.53455 5.70499 5.83753 5.93218 6.01002 6.13279 6.32562 6.37789 6.61928 6.63215 6.74702 7.05955 7.27628 7.35140 7.70605 7.86034 8.08111 8.28296 8.33953 9.01154 9.56046 9.78952 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.076419 B = 0.005448 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.313186 B = 5138.155108 C = 5485.736998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.068 3.932 3 C -0.276 4.276 4 C 0.202 3.798 5 C -0.083 4.083 6 C 0.118 3.882 7 N -0.459 5.459 8 C 0.197 3.803 9 C -0.379 4.379 10 H 0.098 0.902 11 C 0.057 3.943 12 N -0.691 5.691 13 Si 0.919 3.081 14 H -0.265 1.265 15 H -0.271 1.271 16 H -0.255 1.255 17 C -0.044 4.044 18 N -0.398 5.398 19 N -0.486 5.486 20 H 0.433 0.567 21 N -0.320 5.320 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.143 0.857 26 H 0.124 0.876 27 H 0.283 0.717 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 -0.328 -0.115 3.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.096 4.096 3 C -0.306 4.306 4 C 0.073 3.927 5 C -0.219 4.219 6 C -0.055 4.055 7 N -0.174 5.174 8 C 0.073 3.927 9 C -0.409 4.409 10 H 0.116 0.884 11 C -0.172 4.172 12 N -0.310 5.310 13 Si 0.742 3.258 14 H -0.190 1.190 15 H -0.196 1.196 16 H -0.179 1.179 17 C -0.220 4.220 18 N -0.110 5.110 19 N -0.195 5.195 20 H 0.277 0.723 21 N -0.146 5.146 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.161 0.839 26 H 0.141 0.859 27 H 0.094 0.906 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.790 -1.811 -0.129 4.202 hybrid contribution 1.227 0.919 -0.072 1.535 sum -2.562 -0.892 -0.200 2.721 Atomic orbital electron populations 1.20097 0.87510 1.02640 1.02353 1.22029 0.96479 0.91204 0.99887 1.21370 0.90300 0.99085 1.19815 1.19539 0.94141 0.82760 0.96269 1.18693 0.89876 0.90326 1.23011 1.23335 0.89226 0.99401 0.93574 1.69520 1.27529 1.04410 1.15959 1.19499 0.93046 0.89936 0.90180 1.19857 0.89584 0.95267 1.36199 0.88368 1.26329 1.01489 0.95631 0.93762 1.70066 1.25599 1.11210 1.24088 0.86090 0.79503 0.80740 0.79485 1.18961 1.19610 1.17874 1.23189 0.88839 0.98847 1.11131 1.67554 1.33749 1.03899 1.05790 1.46387 1.06668 1.04696 1.61780 0.72338 1.77061 0.86362 1.22525 1.28610 0.91079 0.90803 0.91522 0.83884 0.85857 0.90554 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.43 36.00 0.38 -0.48 15 2 C 0.07 1.22 7.17 -82.58 -0.59 0.63 15 3 C -0.28 -5.46 10.52 -39.22 -0.41 -5.88 15 4 C 0.20 4.24 7.03 -82.06 -0.58 3.66 15 5 C -0.08 -1.93 6.76 -82.62 -0.56 -2.49 15 6 C 0.12 2.75 10.89 -16.92 -0.18 2.57 15 7 N -0.46 -11.83 8.03 -10.63 -0.09 -11.91 15 8 C 0.20 4.97 6.54 -84.79 -0.55 4.42 15 9 C -0.38 -8.96 9.12 -37.92 -0.35 -9.31 15 10 H 0.10 2.08 7.86 -52.49 -0.41 1.67 15 11 C 0.06 1.29 5.49 -17.33 -0.10 1.19 15 12 N -0.69 -16.54 11.49 55.56 0.64 -15.90 15 13 Si 0.92 16.32 29.57 -169.99 -5.03 11.30 15 14 H -0.26 -4.65 7.11 56.52 0.40 -4.25 15 15 H -0.27 -4.77 7.11 56.52 0.40 -4.37 15 16 H -0.26 -4.43 7.11 56.52 0.40 -4.03 15 17 C -0.04 -1.03 10.97 -16.64 -0.18 -1.21 15 18 N -0.40 -9.54 10.21 -8.99 -0.09 -9.63 15 19 N -0.49 -9.11 7.31 33.47 0.24 -8.86 15 20 H 0.43 6.90 8.11 -182.65 -1.48 5.42 15 21 N -0.32 -6.07 12.67 33.57 0.43 -5.64 15 22 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.07 0.82 8.14 -51.92 -0.42 0.40 15 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 25 H 0.14 2.75 8.06 -52.49 -0.42 2.32 15 26 H 0.12 2.46 7.20 -52.49 -0.38 2.08 15 27 H 0.28 6.04 8.29 -40.82 -0.34 5.70 15 28 H 0.14 2.91 8.06 -52.48 -0.42 2.49 15 LS Contribution 257.52 15.07 3.88 3.88 Total: -1.00 -28.84 257.52 -6.66 -35.50 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.52 Total: 8.17 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -3.13 Total: -6.90 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 1.13 Total: -51.95 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.03 Total: 11.30 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.84 -6.66 -35.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665762.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.759 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds