Wall clock time and date at job start Mon Mar 30 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48498 * 109.46946 * 240.00546 * 3 2 1 5 5 H 1.48496 * 109.46933 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 120.00229 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.39466 * 125.69133 * 124.71994 * 10 9 7 12 12 C 1.36662 * 107.85250 * 179.82834 * 11 10 9 13 13 C 1.47901 * 126.33943 * 180.15632 * 12 11 10 14 14 C 1.39895 * 120.19239 * 180.02562 * 13 12 11 15 15 C 1.38598 * 117.87444 * 179.75875 * 14 13 12 16 16 C 1.38756 * 118.08473 * 0.48611 * 15 14 13 17 17 N 1.31953 * 120.10348 * 359.76778 * 16 15 14 18 18 N 1.28352 * 122.32124 * 359.97438 * 17 16 15 19 19 N 1.36337 * 107.31162 * 0.42272 * 12 11 10 20 20 H 0.96997 * 126.14679 * 179.75642 * 19 12 11 21 21 N 1.30901 * 125.69653 * 305.02362 * 10 9 7 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.08000 * 126.06815 * 359.97438 * 11 10 9 26 26 H 1.07995 * 121.06460 * 359.97438 * 14 13 12 27 27 H 1.08004 * 120.95135 * 180.21256 * 15 14 13 28 28 H 1.07996 * 119.95468 * 179.74868 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.2690 -4.6823 0.9305 12 6 3.2932 -5.5181 0.5842 13 6 3.6949 -6.7525 1.2930 14 6 4.7698 -7.5151 0.8238 15 6 5.1082 -8.6600 1.5278 16 6 4.3553 -8.9850 2.6471 17 7 3.3526 -8.2115 3.0177 18 7 3.0339 -7.1465 2.3760 19 7 3.8797 -5.0001 -0.5323 20 1 4.6378 -5.3755 -1.0069 21 7 3.1906 -3.8286 -0.8711 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 1.6055 -4.8048 1.7738 26 1 5.3205 -7.2193 -0.0568 27 1 5.9314 -9.2835 1.2116 28 1 4.5901 -9.8727 3.2157 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259670414.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:03 Heat of formation + Delta-G solvation = 125.371728 kcal Electronic energy + Delta-G solvation = -14478.958746 eV Core-core repulsion = 11918.024157 eV Total energy + Delta-G solvation = -2560.934588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27412 -40.24533 -33.99850 -33.34199 -33.00233 -31.27452 -29.13936 -27.71432 -24.74522 -24.73170 -23.33022 -20.65583 -18.95980 -18.08963 -17.30757 -16.88002 -16.26187 -15.23198 -15.13718 -14.48802 -13.96428 -13.64015 -13.38618 -13.04898 -12.31722 -11.96318 -11.57610 -11.22631 -10.78395 -10.67367 -10.58338 -10.49847 -10.10432 -9.89625 -9.66696 -9.38342 -8.52606 -8.27011 -8.07812 -5.98813 -4.00134 0.39759 0.54669 2.33838 3.00639 3.35549 3.38183 3.41487 3.46165 3.68165 3.97012 4.10887 4.32800 4.35036 4.50850 4.65465 4.98382 5.34586 5.37781 5.48244 5.57929 5.85367 6.13963 6.27762 6.62230 7.27469 7.43255 7.57622 7.69457 7.97635 8.28345 8.45061 8.52160 9.02781 9.62440 11.12279 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.055283 B = 0.004988 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.361085 B = 5611.961340 C = 5775.526116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.058 0.942 9 C 0.085 3.915 10 C 0.112 3.888 11 C -0.192 4.192 12 C 0.080 3.920 13 C 0.152 3.848 14 C -0.121 4.121 15 C -0.110 4.110 16 C 0.026 3.974 17 N -0.232 5.232 18 N -0.221 5.221 19 N -0.489 5.489 20 H 0.428 0.572 21 N -0.261 5.261 22 H 0.263 0.737 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.154 0.846 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.403 -17.335 1.830 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.047 3.953 10 C -0.053 4.053 11 C -0.223 4.223 12 C -0.047 4.047 13 C 0.008 3.992 14 C -0.151 4.151 15 C -0.139 4.139 16 C -0.138 4.138 17 N -0.073 5.073 18 N -0.065 5.065 19 N -0.200 5.200 20 H 0.271 0.729 21 N -0.084 5.084 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.172 0.828 26 H 0.163 0.837 27 H 0.170 0.830 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.556 -16.478 1.891 19.142 hybrid contribution 1.852 -0.020 -0.563 1.936 sum 11.408 -16.498 1.328 20.102 Atomic orbital electron populations 1.69936 1.05947 1.26935 1.50680 1.24975 0.94889 0.99214 0.95277 0.86571 0.79494 0.82809 0.78635 1.20235 1.21268 1.20273 1.21010 0.93122 0.89799 1.50736 0.92352 1.17922 0.91015 0.87345 0.99038 1.23355 0.94941 0.96382 0.90636 1.21711 1.01081 0.95825 1.03683 1.18630 0.98847 0.94823 0.92433 1.20533 0.92399 0.93025 0.93251 1.22315 0.96860 0.95124 1.00790 1.22320 0.99963 0.96507 0.95063 1.24366 0.93186 1.00530 0.95725 1.73113 1.12586 0.99204 1.22372 1.73362 1.22082 1.07316 1.03775 1.46631 1.29306 1.21399 1.22650 0.72888 1.77509 1.09285 0.98137 1.23454 0.92788 0.94080 0.93846 0.82820 0.83679 0.82990 0.80944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.88 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.51 -14.56 9.06 -34.44 -0.31 -14.87 15 8 H 0.06 1.68 7.74 -52.48 -0.41 1.28 15 9 C 0.09 2.25 5.55 -29.03 -0.16 2.09 15 10 C 0.11 2.58 6.40 -82.53 -0.53 2.05 15 11 C -0.19 -3.82 10.44 -39.69 -0.41 -4.23 15 12 C 0.08 1.35 7.00 -82.48 -0.58 0.77 15 13 C 0.15 2.17 6.83 -82.84 -0.57 1.60 15 14 C -0.12 -1.19 9.85 -38.83 -0.38 -1.57 15 15 C -0.11 -0.82 10.20 -39.26 -0.40 -1.22 15 16 C 0.03 0.24 11.31 -17.31 -0.20 0.04 15 17 N -0.23 -3.15 11.50 30.58 0.35 -2.80 15 18 N -0.22 -3.48 11.25 33.31 0.37 -3.10 15 19 N -0.49 -8.05 7.31 33.28 0.24 -7.81 15 20 H 0.43 5.10 8.18 -182.62 -1.49 3.61 15 21 N -0.26 -5.66 12.64 33.60 0.42 -5.24 15 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 23 H 0.04 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.04 1.16 8.11 -51.93 -0.42 0.73 15 25 H 0.15 2.91 8.06 -52.49 -0.42 2.49 15 26 H 0.15 0.99 7.30 -52.49 -0.38 0.60 15 27 H 0.15 0.53 8.06 -52.48 -0.42 0.11 15 28 H 0.17 0.88 8.06 -52.49 -0.42 0.46 15 LS Contribution 260.88 15.07 3.93 3.93 Total: -1.00 -33.68 260.88 -6.12 -39.80 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -3.53 Total: -2.09 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.63 Total: -13.79 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 2.13 Total: -44.82 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.68 -6.12 -39.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259670414.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.174 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds