Wall clock time and date at job start Mon Mar 30 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48498 * 109.46946 * 240.00546 * 3 2 1 5 5 H 1.48496 * 109.46933 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 120.00229 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.39466 * 125.69133 * 124.71994 * 10 9 7 12 12 C 1.36662 * 107.85250 * 179.82834 * 11 10 9 13 13 C 1.47901 * 126.33943 * 180.15632 * 12 11 10 14 14 C 1.39895 * 120.19239 * 180.02562 * 13 12 11 15 15 C 1.38598 * 117.87444 * 179.75875 * 14 13 12 16 16 C 1.38756 * 118.08473 * 0.48611 * 15 14 13 17 17 N 1.31953 * 120.10348 * 359.76778 * 16 15 14 18 18 N 1.28352 * 122.32124 * 359.97438 * 17 16 15 19 19 N 1.36337 * 107.31162 * 0.42272 * 12 11 10 20 20 H 0.96997 * 126.14679 * 179.75642 * 19 12 11 21 21 N 1.30901 * 125.69653 * 305.02362 * 10 9 7 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.08000 * 126.06815 * 359.97438 * 11 10 9 26 26 H 1.07995 * 121.06460 * 359.97438 * 14 13 12 27 27 H 1.08004 * 120.95135 * 180.21256 * 15 14 13 28 28 H 1.07996 * 119.95468 * 179.74868 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.2690 -4.6823 0.9305 12 6 3.2932 -5.5181 0.5842 13 6 3.6949 -6.7525 1.2930 14 6 4.7698 -7.5151 0.8238 15 6 5.1082 -8.6600 1.5278 16 6 4.3553 -8.9850 2.6471 17 7 3.3526 -8.2115 3.0177 18 7 3.0339 -7.1465 2.3760 19 7 3.8797 -5.0001 -0.5323 20 1 4.6378 -5.3755 -1.0069 21 7 3.1906 -3.8286 -0.8711 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 1.6055 -4.8048 1.7738 26 1 5.3205 -7.2193 -0.0568 27 1 5.9314 -9.2835 1.2116 28 1 4.5901 -9.8727 3.2157 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259670414.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:03 Heat of formation + Delta-G solvation = 100.578413 kcal Electronic energy + Delta-G solvation = -14480.033864 eV Core-core repulsion = 11918.024157 eV Total energy + Delta-G solvation = -2562.009707 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.41010 -41.50535 -35.68834 -34.55940 -34.09000 -32.98494 -30.50063 -29.64764 -25.85410 -25.71154 -25.19509 -21.99289 -20.61499 -19.30776 -18.47543 -18.22562 -17.63431 -16.59155 -16.29549 -16.14689 -15.39537 -14.69029 -14.56167 -14.26800 -14.14880 -13.91380 -13.52376 -12.70280 -12.65386 -12.18225 -11.85710 -11.75718 -11.60854 -11.35892 -11.26382 -10.71817 -10.59341 -10.02505 -9.52114 -8.18802 -6.28900 -0.54430 -0.19619 1.03791 1.41095 1.44826 1.52701 1.70857 1.84132 2.44398 2.63737 2.92264 3.14052 3.29378 3.59752 3.71324 3.87554 3.97412 4.19713 4.45175 4.71943 4.77714 4.86933 5.08043 5.24591 5.29613 5.44143 5.62028 5.74452 6.16492 6.38441 6.75459 6.82758 7.37914 7.63788 8.92514 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.055283 B = 0.004988 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.361085 B = 5611.961340 C = 5775.526116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.093 3.907 10 C 0.091 3.909 11 C -0.232 4.232 12 C 0.117 3.883 13 C 0.121 3.879 14 C -0.115 4.115 15 C -0.087 4.087 16 C 0.038 3.962 17 N -0.274 5.274 18 N -0.263 5.263 19 N -0.460 5.460 20 H 0.451 0.549 21 N -0.293 5.293 22 H 0.267 0.733 23 H 0.015 0.985 24 H 0.025 0.975 25 H 0.149 0.851 26 H 0.179 0.821 27 H 0.208 0.792 28 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.673 -19.481 1.735 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.054 3.946 10 C -0.073 4.073 11 C -0.263 4.263 12 C -0.012 4.012 13 C -0.025 4.025 14 C -0.144 4.144 15 C -0.115 4.115 16 C -0.126 4.126 17 N -0.114 5.114 18 N -0.106 5.106 19 N -0.173 5.173 20 H 0.299 0.701 21 N -0.118 5.118 22 H 0.075 0.925 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.167 0.833 26 H 0.196 0.804 27 H 0.225 0.775 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 12.831 -18.634 1.791 22.695 hybrid contribution 0.971 0.343 -0.483 1.137 sum 13.802 -18.291 1.308 22.951 Atomic orbital electron populations 1.70057 1.07479 1.28085 1.51183 1.25882 0.95830 1.02983 0.94592 0.85475 0.78297 0.78147 0.78954 1.19507 1.20238 1.19454 1.21271 0.92982 0.91178 1.51079 0.92988 1.17577 0.91439 0.88672 0.96889 1.22785 0.95439 0.96544 0.92573 1.21621 1.03578 0.96777 1.04316 1.18830 0.96537 0.94692 0.91178 1.20393 0.94994 0.93018 0.94091 1.22719 0.95045 0.94945 1.01672 1.22936 1.00034 0.95432 0.93095 1.25181 0.91112 1.00353 0.95989 1.73043 1.15265 0.99703 1.23381 1.73237 1.23695 1.08829 1.04823 1.46450 1.28966 1.19675 1.22195 0.70107 1.77344 1.09892 1.00575 1.23987 0.92453 0.96668 0.95630 0.83340 0.80357 0.77522 0.76744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.64 15 2 C 0.01 0.32 5.46 84.65 0.46 0.78 15 3 Si 0.97 45.71 29.54 68.60 2.03 47.73 15 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 15 7 C -0.53 -31.45 9.06 25.60 0.23 -31.22 15 8 H 0.05 3.10 7.74 -2.91 -0.02 3.07 15 9 C 0.09 5.24 5.55 29.10 0.16 5.40 15 10 C 0.09 4.41 6.40 43.00 0.28 4.68 15 11 C -0.23 -9.76 10.44 22.20 0.23 -9.52 15 12 C 0.12 3.94 7.00 40.64 0.28 4.23 15 13 C 0.12 3.25 6.83 41.95 0.29 3.54 15 14 C -0.11 -1.75 9.85 22.76 0.22 -1.52 15 15 C -0.09 -0.79 10.20 22.48 0.23 -0.56 15 16 C 0.04 0.53 11.31 84.80 0.96 1.48 15 17 N -0.27 -6.99 11.50 -57.15 -0.66 -7.65 15 18 N -0.26 -8.18 11.25 -48.53 -0.55 -8.72 15 19 N -0.46 -14.65 7.31 -48.62 -0.36 -15.00 15 20 H 0.45 9.50 8.18 -213.34 -1.74 7.76 15 21 N -0.29 -13.01 12.64 -47.60 -0.60 -13.61 15 22 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 23 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 24 H 0.03 1.48 8.11 -2.39 -0.02 1.46 15 25 H 0.15 6.16 8.06 -2.91 -0.02 6.14 15 26 H 0.18 1.41 7.30 -2.91 -0.02 1.39 15 27 H 0.21 -0.30 8.06 -2.91 -0.02 -0.32 15 28 H 0.22 0.96 8.06 -2.91 -0.02 0.93 15 Total: -1.00 -78.88 260.88 2.95 -75.93 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -0.55 Total: 0.67 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 3.35 Total: -22.71 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -1.87 Total: -101.62 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -78.88 2.95 -75.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259670414.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.511 kcal (2) G-P(sol) polarization free energy of solvation -78.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds