Wall clock time and date at job start Mon Mar 30 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99747 * 2 1 4 4 H 1.48499 * 109.47207 * 239.99942 * 3 2 1 5 5 H 1.48502 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47302 * 120.00001 * 3 2 1 7 7 C 1.37878 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99620 * 173.00806 * 7 2 1 9 9 C 1.50696 * 120.00094 * 353.01208 * 7 2 1 10 10 C 1.50700 * 115.55190 * 83.18816 * 9 7 2 11 11 C 1.38257 * 119.97746 * 234.39886 * 10 9 7 12 12 C 1.38719 * 120.08911 * 179.97438 * 11 10 9 13 13 C 1.37971 * 119.80067 * 0.02562 * 12 11 10 14 14 C 1.38770 * 120.01656 * 0.02562 * 13 12 11 15 15 C 1.37973 * 120.13242 * 359.96893 * 14 13 12 16 16 C 1.51082 * 107.18216 * 179.97438 * 14 13 12 17 17 O 1.43941 * 106.01850 * 17.71622 * 16 14 13 18 18 C 1.43951 * 104.94702 * 331.51924 * 17 16 14 19 19 C 1.53001 * 117.49685 * 228.85845 * 9 7 2 20 20 C 1.53004 * 117.49786 * 297.51643 * 9 7 2 21 21 H 0.96992 * 120.00182 * 354.94100 * 1 2 3 22 22 H 1.07996 * 119.98416 * 359.97438 * 11 10 9 23 23 H 1.07998 * 120.15734 * 180.02562 * 12 11 10 24 24 H 1.07993 * 120.03951 * 179.97438 * 15 14 13 25 25 H 1.09002 * 110.15107 * 258.55964 * 16 14 13 26 26 H 1.08992 * 110.15410 * 136.87948 * 16 14 13 27 27 H 1.08999 * 110.15215 * 147.56677 * 18 17 16 28 28 H 1.08990 * 110.15246 * 269.24865 * 18 17 16 29 29 H 1.09000 * 117.50297 * 214.99945 * 19 9 7 30 30 H 1.09002 * 117.50172 * 0.02816 * 19 9 7 31 31 H 1.08997 * 117.49462 * 359.97438 * 20 9 7 32 32 H 1.09003 * 117.49703 * 144.99852 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0785 -1.1974 -0.1144 9 6 1.2595 -2.4944 0.1577 10 6 0.6568 -3.0558 -1.1043 11 6 -0.6903 -3.3636 -1.1489 12 6 -1.2477 -3.8801 -2.3094 13 6 -0.4536 -4.0861 -3.4187 14 6 0.8986 -3.7774 -3.3715 15 6 1.4518 -3.2637 -2.2166 16 6 1.4805 -4.1131 -4.7247 17 8 0.3619 -4.2083 -5.6256 18 6 -0.7443 -4.6202 -4.8017 19 6 1.7884 -3.4902 1.1918 20 6 0.4961 -2.7166 1.4649 21 1 -0.4850 0.8367 0.0741 22 1 -1.3100 -3.2020 -0.2792 23 1 -2.2999 -4.1205 -2.3456 24 1 2.5043 -3.0244 -2.1814 25 1 2.0092 -5.0653 -4.6804 26 1 2.1576 -3.3229 -5.0488 27 1 -1.6736 -4.1950 -5.1808 28 1 -0.8112 -5.7078 -4.7791 29 1 1.7004 -4.5515 0.9595 30 1 2.6749 -3.2047 1.7581 31 1 0.5331 -1.9224 2.2105 32 1 -0.4422 -3.2689 1.4120 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259870308.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:42 Heat of formation + Delta-G solvation = 9.129129 kcal Electronic energy + Delta-G solvation = -15632.503791 eV Core-core repulsion = 13137.776137 eV Total energy + Delta-G solvation = -2494.727653 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.07346 -37.65400 -35.39182 -32.02669 -30.88392 -30.24565 -27.45283 -25.59354 -24.21437 -21.75777 -21.29358 -20.67005 -18.96815 -16.51066 -16.05805 -15.87257 -15.36918 -14.77122 -14.51375 -13.68545 -13.34836 -13.26790 -12.75500 -12.52033 -12.12795 -11.90262 -11.48467 -11.09101 -11.00348 -10.92468 -10.50276 -10.35444 -10.22270 -9.74206 -9.63854 -9.16237 -8.50514 -8.37908 -8.06326 -7.48709 -6.09896 -4.18157 2.01712 2.11975 3.27389 3.32835 3.34720 4.23948 4.34373 4.42756 4.76261 5.12112 5.17978 5.32201 5.48475 5.63243 5.68475 5.76171 5.85869 5.94664 6.16479 6.25991 6.33038 6.42636 6.55648 6.65887 6.76024 6.83991 6.90272 7.01094 7.19661 7.34591 7.41566 7.61550 7.78067 7.84415 8.31941 8.82523 9.48266 10.97973 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.027503 B = 0.008555 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.815849 B = 3272.323274 C = 3673.031728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.497 4.497 8 H 0.062 0.938 9 C 0.069 3.931 10 C 0.015 3.985 11 C -0.108 4.108 12 C -0.099 4.099 13 C -0.168 4.168 14 C -0.144 4.144 15 C -0.080 4.080 16 C 0.096 3.904 17 O -0.370 6.370 18 C 0.099 3.901 19 C -0.200 4.200 20 C -0.159 4.159 21 H 0.261 0.739 22 H 0.123 0.877 23 H 0.112 0.888 24 H 0.120 0.880 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 -7.593 -4.180 8.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.534 4.534 8 H 0.080 0.920 9 C 0.068 3.932 10 C 0.015 3.985 11 C -0.126 4.126 12 C -0.117 4.117 13 C -0.168 4.168 14 C -0.145 4.145 15 C -0.098 4.098 16 C 0.020 3.980 17 O -0.289 6.289 18 C 0.023 3.977 19 C -0.237 4.237 20 C -0.196 4.196 21 H 0.071 0.929 22 H 0.140 0.860 23 H 0.130 0.870 24 H 0.138 0.862 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.816 -7.417 -4.489 8.708 hybrid contribution 0.280 1.047 0.297 1.124 sum -0.536 -6.370 -4.192 7.644 Atomic orbital electron populations 1.70016 1.05841 1.27054 1.47446 1.24975 0.94825 0.98951 0.94233 0.86702 0.79738 0.83131 0.78757 1.20080 1.21223 1.20149 1.20321 0.92757 0.88326 1.52025 0.91990 1.17672 0.97783 0.93546 0.84156 1.19762 0.92460 0.90556 0.95737 1.21141 0.95478 0.98648 0.97378 1.20326 0.98403 1.00749 0.92238 1.20742 0.95316 1.04545 0.96189 1.20872 0.95063 1.02515 0.96014 1.20154 1.00283 0.98421 0.90947 1.21638 0.89286 1.00979 0.86138 1.88999 1.19217 1.89762 1.30898 1.21577 0.90709 0.98259 0.87175 1.23028 0.98341 0.95619 1.06689 1.22634 0.92786 1.01351 1.02837 0.92878 0.85955 0.87023 0.86228 0.91364 0.89081 0.89484 0.91603 0.91491 0.90022 0.89870 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.09 13.03 55.43 0.72 -23.37 16 2 C 0.07 2.01 5.40 -17.82 -0.10 1.91 16 3 Si 0.89 20.78 29.55 -169.99 -5.02 15.76 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.50 -13.14 8.55 -34.44 -0.29 -13.43 16 8 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 9 C 0.07 1.65 1.58 -156.81 -0.25 1.40 16 10 C 0.02 0.35 5.25 -104.59 -0.55 -0.20 16 11 C -0.11 -2.29 9.32 -39.40 -0.37 -2.66 16 12 C -0.10 -1.84 10.07 -39.50 -0.40 -2.23 16 13 C -0.17 -3.05 6.33 -104.34 -0.66 -3.71 16 14 C -0.14 -2.75 6.33 -104.34 -0.66 -3.41 16 15 C -0.08 -1.69 9.45 -39.66 -0.37 -2.07 16 16 C 0.10 1.53 7.62 36.19 0.28 1.80 16 17 O -0.37 -6.19 11.72 -35.23 -0.41 -6.61 16 18 C 0.10 1.51 7.63 36.19 0.28 1.78 16 19 C -0.20 -4.20 9.94 -26.69 -0.27 -4.47 16 20 C -0.16 -3.57 9.12 -26.69 -0.24 -3.81 16 21 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 22 H 0.12 2.55 6.42 -52.49 -0.34 2.21 16 23 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 24 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 32 H 0.07 1.41 6.57 -51.93 -0.34 1.07 16 LS Contribution 274.43 15.07 4.14 4.14 Total: -1.00 -28.41 274.43 -8.21 -36.62 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.03 Total: 2.55 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: -3.60 Total: -29.09 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.72 Total: -23.37 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.41 Total: -6.61 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.41 -8.21 -36.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870308.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.753 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds