Wall clock time and date at job start Mon Mar 30 2020 03:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99747 * 2 1 4 4 H 1.48499 * 109.47207 * 239.99942 * 3 2 1 5 5 H 1.48502 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47302 * 120.00001 * 3 2 1 7 7 C 1.37878 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99620 * 173.00806 * 7 2 1 9 9 C 1.50696 * 120.00094 * 353.01208 * 7 2 1 10 10 C 1.50700 * 115.55190 * 83.18816 * 9 7 2 11 11 C 1.38257 * 119.97746 * 234.39886 * 10 9 7 12 12 C 1.38719 * 120.08911 * 179.97438 * 11 10 9 13 13 C 1.37971 * 119.80067 * 0.02562 * 12 11 10 14 14 C 1.38770 * 120.01656 * 0.02562 * 13 12 11 15 15 C 1.37973 * 120.13242 * 359.96893 * 14 13 12 16 16 C 1.51082 * 107.18216 * 179.97438 * 14 13 12 17 17 O 1.43941 * 106.01850 * 17.71622 * 16 14 13 18 18 C 1.43951 * 104.94702 * 331.51924 * 17 16 14 19 19 C 1.53001 * 117.49685 * 228.85845 * 9 7 2 20 20 C 1.53004 * 117.49786 * 297.51643 * 9 7 2 21 21 H 0.96992 * 120.00182 * 354.94100 * 1 2 3 22 22 H 1.07996 * 119.98416 * 359.97438 * 11 10 9 23 23 H 1.07998 * 120.15734 * 180.02562 * 12 11 10 24 24 H 1.07993 * 120.03951 * 179.97438 * 15 14 13 25 25 H 1.09002 * 110.15107 * 258.55964 * 16 14 13 26 26 H 1.08992 * 110.15410 * 136.87948 * 16 14 13 27 27 H 1.08999 * 110.15215 * 147.56677 * 18 17 16 28 28 H 1.08990 * 110.15246 * 269.24865 * 18 17 16 29 29 H 1.09000 * 117.50297 * 214.99945 * 19 9 7 30 30 H 1.09002 * 117.50172 * 0.02816 * 19 9 7 31 31 H 1.08997 * 117.49462 * 359.97438 * 20 9 7 32 32 H 1.09003 * 117.49703 * 144.99852 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0785 -1.1974 -0.1144 9 6 1.2595 -2.4944 0.1577 10 6 0.6568 -3.0558 -1.1043 11 6 -0.6903 -3.3636 -1.1489 12 6 -1.2477 -3.8801 -2.3094 13 6 -0.4536 -4.0861 -3.4187 14 6 0.8986 -3.7774 -3.3715 15 6 1.4518 -3.2637 -2.2166 16 6 1.4805 -4.1131 -4.7247 17 8 0.3619 -4.2083 -5.6256 18 6 -0.7443 -4.6202 -4.8017 19 6 1.7884 -3.4902 1.1918 20 6 0.4961 -2.7166 1.4649 21 1 -0.4850 0.8367 0.0741 22 1 -1.3100 -3.2020 -0.2792 23 1 -2.2999 -4.1205 -2.3456 24 1 2.5043 -3.0244 -2.1814 25 1 2.0092 -5.0653 -4.6804 26 1 2.1576 -3.3229 -5.0488 27 1 -1.6736 -4.1950 -5.1808 28 1 -0.8112 -5.7078 -4.7791 29 1 1.7004 -4.5515 0.9595 30 1 2.6749 -3.2047 1.7581 31 1 0.5331 -1.9224 2.2105 32 1 -0.4422 -3.2689 1.4120 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259870308.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:41 Heat of formation + Delta-G solvation = -5.808375 kcal Electronic energy + Delta-G solvation = -15633.151530 eV Core-core repulsion = 13137.776137 eV Total energy + Delta-G solvation = -2495.375392 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46032 -39.21970 -36.97648 -34.02984 -32.33135 -31.71562 -28.81532 -27.54465 -25.62988 -23.43225 -22.80565 -22.23587 -20.67878 -18.34443 -17.45703 -17.13566 -16.76731 -16.64472 -16.24478 -15.16360 -14.96914 -14.83240 -14.26595 -13.89463 -13.61384 -13.39153 -13.19247 -12.94374 -12.75837 -12.59251 -12.27644 -12.00963 -11.81987 -11.39857 -11.16919 -10.82548 -10.47526 -10.14255 -9.57622 -9.05107 -8.11680 -6.24844 0.49782 0.59573 1.40949 1.41428 1.48428 2.40791 2.86628 3.01889 3.17119 3.37635 3.55297 3.81027 4.15118 4.25730 4.47155 4.47954 4.52282 4.57653 4.62995 4.66166 4.70888 4.86971 4.95039 5.04569 5.22082 5.30639 5.32241 5.43157 5.59272 5.68034 5.75529 5.84971 6.01191 6.24588 6.39073 6.80172 7.43435 8.94783 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.027503 B = 0.008555 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.815849 B = 3272.323274 C = 3673.031728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.030 3.970 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.044 3.956 10 C -0.010 4.010 11 C -0.127 4.127 12 C -0.097 4.097 13 C -0.170 4.170 14 C -0.151 4.151 15 C -0.100 4.100 16 C 0.098 3.902 17 O -0.381 6.381 18 C 0.100 3.900 19 C -0.179 4.179 20 C -0.160 4.160 21 H 0.259 0.741 22 H 0.116 0.884 23 H 0.144 0.856 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 -8.625 -5.526 10.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.171 4.171 3 Si 0.771 3.229 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.043 3.957 10 C -0.010 4.010 11 C -0.145 4.145 12 C -0.114 4.114 13 C -0.170 4.170 14 C -0.151 4.151 15 C -0.118 4.118 16 C 0.022 3.978 17 O -0.300 6.300 18 C 0.025 3.975 19 C -0.216 4.216 20 C -0.198 4.198 21 H 0.068 0.932 22 H 0.133 0.867 23 H 0.162 0.838 24 H 0.132 0.868 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.992 -8.458 -5.832 10.322 hybrid contribution 0.338 1.302 0.682 1.509 sum -0.654 -7.156 -5.149 8.840 Atomic orbital electron populations 1.70122 1.06896 1.27373 1.48800 1.25625 0.95545 1.01712 0.94252 0.85826 0.78604 0.79705 0.78811 1.19913 1.21172 1.19515 1.20614 0.92703 0.89952 1.51474 0.92737 1.17759 0.98839 0.93689 0.85388 1.19728 0.93398 0.92287 0.95621 1.21193 0.94955 0.99885 0.98443 1.20616 1.00040 0.99430 0.91349 1.21224 0.94886 1.03387 0.97515 1.21237 0.96009 1.01330 0.96562 1.20175 1.00096 0.99807 0.91769 1.21758 0.89263 1.02623 0.84168 1.88993 1.19743 1.90079 1.31196 1.21786 0.90936 0.99954 0.84865 1.23033 0.97511 0.96245 1.04853 1.22536 0.94080 1.01350 1.01816 0.93209 0.86653 0.83832 0.86849 0.88726 0.88302 0.87542 0.88711 0.89448 0.89766 0.91922 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.59 13.03 21.45 0.28 -50.31 16 2 C 0.03 1.65 5.40 84.65 0.46 2.10 16 3 Si 0.94 43.13 29.55 68.60 2.03 45.16 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.51 -27.44 8.55 25.60 0.22 -27.22 16 8 H 0.05 2.91 7.82 -2.91 -0.02 2.89 16 9 C 0.04 2.11 1.58 -53.67 -0.08 2.03 16 10 C -0.01 -0.45 5.25 -19.85 -0.10 -0.56 16 11 C -0.13 -5.31 9.32 22.39 0.21 -5.10 16 12 C -0.10 -3.39 10.07 22.32 0.22 -3.17 16 13 C -0.17 -5.75 6.33 -19.68 -0.12 -5.88 16 14 C -0.15 -5.50 6.33 -19.68 -0.12 -5.63 16 15 C -0.10 -4.24 9.45 22.22 0.21 -4.03 16 16 C 0.10 2.85 7.62 71.36 0.54 3.40 16 17 O -0.38 -11.47 11.72 -148.98 -1.75 -13.21 16 18 C 0.10 2.66 7.63 71.36 0.54 3.20 16 19 C -0.18 -7.52 9.94 30.62 0.30 -7.21 16 20 C -0.16 -7.32 9.12 30.62 0.28 -7.04 16 21 H 0.26 14.12 8.32 -92.71 -0.77 13.34 16 22 H 0.12 4.86 6.42 -2.91 -0.02 4.84 16 23 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 24 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 25 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 29 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.08 3.35 6.57 -2.39 -0.02 3.33 16 Total: -1.00 -60.56 274.43 4.22 -56.33 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.11 Total: 17.16 kcal Atomic # 6 Polarization: -57.67 SS G_CDS: 2.55 Total: -55.12 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.28 Total: -50.31 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.75 Total: -13.21 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -60.56 4.22 -56.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870308.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.525 kcal (2) G-P(sol) polarization free energy of solvation -60.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds