Wall clock time and date at job start Mon Mar 30 2020 03:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00460 * 2 1 4 4 H 1.48504 * 109.46730 * 264.80834 * 3 2 1 5 5 H 1.48497 * 109.46701 * 24.80688 * 3 2 1 6 6 H 1.48492 * 109.47176 * 144.81008 * 3 2 1 7 7 C 1.37881 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99817 * 3.19472 * 7 2 1 9 9 C 1.50698 * 120.00179 * 183.20045 * 7 2 1 10 10 C 1.50704 * 115.54763 * 90.78748 * 9 7 2 11 11 C 1.38337 * 120.03521 * 241.08146 * 10 9 7 12 12 C 1.38227 * 120.03714 * 180.02562 * 11 10 9 13 13 C 1.38329 * 120.04412 * 359.97438 * 12 11 10 14 14 C 1.37922 * 119.91857 * 0.02562 * 13 12 11 15 15 C 1.37916 * 120.04335 * 61.10398 * 10 9 7 16 16 C 1.51083 * 132.69518 * 0.02562 * 15 10 9 17 17 O 1.44118 * 105.97215 * 197.67602 * 16 15 10 18 18 C 1.43941 * 104.86960 * 331.54350 * 17 16 15 19 19 C 1.52997 * 117.50078 * 236.45297 * 9 7 2 20 20 C 1.52998 * 117.49963 * 305.11691 * 9 7 2 21 21 H 0.97003 * 119.99563 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.98334 * 0.04042 * 11 10 9 23 23 H 1.08006 * 119.97327 * 179.97438 * 12 11 10 24 24 H 1.07997 * 120.04257 * 180.02562 * 13 12 11 25 25 H 1.09008 * 110.15363 * 316.78563 * 16 15 10 26 26 H 1.08997 * 110.15709 * 78.47016 * 16 15 10 27 27 H 1.09002 * 110.15126 * 269.30644 * 18 17 16 28 28 H 1.08994 * 110.15261 * 147.62168 * 18 17 16 29 29 H 1.08994 * 117.50153 * 215.00047 * 19 9 7 30 30 H 1.09000 * 117.49595 * 0.02778 * 19 9 7 31 31 H 1.09007 * 117.49790 * 359.97438 * 20 9 7 32 32 H 1.08998 * 117.50164 * 144.99381 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6065 1.9829 -1.3944 5 1 1.3962 2.6818 0.5874 6 1 3.4876 1.4742 0.8068 7 6 2.0045 -1.1941 -0.0005 8 1 1.4657 -2.1287 -0.0531 9 6 3.5098 -1.1953 0.0723 10 6 4.0932 -1.2530 1.4606 11 6 4.8939 -0.2221 1.9187 12 6 5.4295 -0.2752 3.1918 13 6 5.1651 -1.3591 4.0097 14 6 4.3668 -2.3869 3.5531 15 6 3.8299 -2.3338 2.2759 16 6 3.0156 -3.5911 2.0792 17 8 2.7755 -4.1186 3.3987 18 6 3.8996 -3.6784 4.1826 19 6 4.2705 -1.9134 -1.0441 20 6 4.2686 -0.3840 -0.9797 21 1 -0.4849 0.8401 -0.0004 22 1 5.1005 0.6249 1.2812 23 1 6.0548 0.5300 3.5482 24 1 5.5832 -1.4004 5.0046 25 1 2.0697 -3.3535 1.5922 26 1 3.5747 -4.3111 1.4817 27 1 4.6956 -4.4223 4.1484 28 1 3.5930 -3.5042 5.2139 29 1 5.1930 -2.4275 -0.7745 30 1 3.6823 -2.3846 -1.8315 31 1 3.6791 0.1503 -1.7249 32 1 5.1898 0.1081 -0.6678 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909013.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:44 Heat of formation + Delta-G solvation = 15.275296 kcal Electronic energy + Delta-G solvation = -16062.781247 eV Core-core repulsion = 13568.320112 eV Total energy + Delta-G solvation = -2494.461136 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.21551 -37.59935 -35.91305 -32.16375 -30.78912 -30.57766 -27.30631 -25.89559 -24.26912 -22.17860 -21.62488 -20.65735 -18.84999 -16.85761 -16.03505 -15.70683 -15.34531 -14.99846 -14.85519 -13.99871 -13.38726 -13.15720 -12.76632 -12.69113 -12.30886 -12.05174 -11.61834 -11.26755 -11.13464 -10.90826 -10.67818 -10.39843 -10.05564 -9.70802 -9.54976 -9.43944 -8.73835 -8.55122 -8.03254 -7.85792 -6.17127 -4.21590 1.77206 1.91904 3.26584 3.37313 3.39937 4.18258 4.37922 4.40879 4.74889 4.83274 5.10834 5.23149 5.38452 5.52467 5.63546 5.67645 5.80723 5.91070 6.00676 6.02418 6.07457 6.26963 6.39955 6.46816 6.57574 6.60503 6.73791 6.85245 7.00469 7.04357 7.09681 7.34652 7.53108 7.64441 8.39905 8.82796 9.44841 10.93501 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.025343 B = 0.011394 C = 0.010249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.598131 B = 2456.815995 C = 2731.239524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.081 3.919 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.248 1.248 7 C -0.486 4.486 8 H 0.082 0.918 9 C 0.030 3.970 10 C 0.010 3.990 11 C -0.123 4.123 12 C -0.124 4.124 13 C -0.117 4.117 14 C -0.145 4.145 15 C -0.104 4.104 16 C 0.091 3.909 17 O -0.367 6.367 18 C 0.095 3.905 19 C -0.172 4.172 20 C -0.203 4.203 21 H 0.266 0.734 22 H 0.124 0.876 23 H 0.117 0.883 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.629 -2.539 4.927 11.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.123 4.123 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.172 1.172 7 C -0.522 4.522 8 H 0.100 0.900 9 C 0.029 3.971 10 C 0.010 3.990 11 C -0.141 4.141 12 C -0.142 4.142 13 C -0.135 4.135 14 C -0.145 4.145 15 C -0.104 4.104 16 C 0.016 3.984 17 O -0.286 6.286 18 C 0.019 3.981 19 C -0.209 4.209 20 C -0.240 4.240 21 H 0.076 0.924 22 H 0.142 0.858 23 H 0.135 0.865 24 H 0.132 0.868 25 H 0.133 0.867 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.253 -2.567 4.997 11.691 hybrid contribution 0.538 1.273 -0.072 1.384 sum 10.791 -1.295 4.925 11.932 Atomic orbital electron populations 1.69888 1.06413 1.27377 1.49065 1.24991 0.94614 0.99212 0.93448 0.86952 0.80886 0.83025 0.78694 1.20438 1.22497 1.17187 1.20159 0.85779 0.94714 1.51592 0.90025 1.18233 0.94412 1.00494 0.83957 1.19154 0.92210 0.91012 0.96660 1.21194 0.97994 0.98716 0.96168 1.20966 1.00851 0.97920 0.94425 1.20106 1.00224 0.93670 0.99474 1.21004 1.00068 0.96936 0.96507 1.20577 0.99094 0.96594 0.94183 1.21848 1.01389 0.90790 0.84398 1.89080 1.42986 1.74769 1.21757 1.21601 0.89135 0.91632 0.95777 1.22892 1.01103 0.93841 1.03061 1.23049 1.01754 0.94185 1.04986 0.92394 0.85812 0.86451 0.86771 0.86714 0.91430 0.91503 0.89408 0.90941 0.89116 0.89077 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.88 21.18 24.81 -169.99 -4.22 16.96 16 4 H -0.28 -6.55 6.85 56.52 0.39 -6.16 16 5 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.25 -5.55 4.23 56.52 0.24 -5.31 16 7 C -0.49 -13.03 8.60 -34.44 -0.30 -13.33 16 8 H 0.08 2.36 7.30 -52.48 -0.38 1.98 16 9 C 0.03 0.67 0.96 -156.81 -0.15 0.52 16 10 C 0.01 0.22 5.10 -104.70 -0.53 -0.32 16 11 C -0.12 -2.38 8.19 -39.55 -0.32 -2.70 16 12 C -0.12 -2.06 10.05 -39.55 -0.40 -2.45 16 13 C -0.12 -1.88 10.04 -39.66 -0.40 -2.28 16 14 C -0.14 -2.58 6.32 -104.40 -0.66 -3.24 16 15 C -0.10 -2.12 5.99 -104.40 -0.63 -2.75 16 16 C 0.09 1.78 7.32 36.19 0.27 2.04 16 17 O -0.37 -6.92 11.73 -35.23 -0.41 -7.33 16 18 C 0.10 1.49 7.62 36.19 0.28 1.77 16 19 C -0.17 -3.38 9.94 -26.69 -0.27 -3.65 16 20 C -0.20 -4.17 6.87 -26.69 -0.18 -4.35 16 21 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.12 2.33 5.40 -52.48 -0.28 2.04 16 23 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 24 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 25 H 0.12 2.48 6.72 -51.92 -0.35 2.14 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 31 H 0.09 1.97 6.40 -51.93 -0.33 1.64 16 32 H 0.08 1.41 6.90 -51.93 -0.36 1.05 16 LS Contribution 259.01 15.07 3.90 3.90 Total: -1.00 -29.63 259.01 -7.32 -36.95 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -3.98 Total: 3.98 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -3.39 Total: -28.56 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.77 Total: -25.90 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.41 Total: -7.33 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.22 Total: 16.96 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.63 -7.32 -36.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909013.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.224 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds