Wall clock time and date at job start Mon Mar 30 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00460 * 2 1 4 4 H 1.48504 * 109.46730 * 264.80834 * 3 2 1 5 5 H 1.48497 * 109.46701 * 24.80688 * 3 2 1 6 6 H 1.48492 * 109.47176 * 144.81008 * 3 2 1 7 7 C 1.37881 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99817 * 3.19472 * 7 2 1 9 9 C 1.50698 * 120.00179 * 183.20045 * 7 2 1 10 10 C 1.50704 * 115.54763 * 90.78748 * 9 7 2 11 11 C 1.38337 * 120.03521 * 241.08146 * 10 9 7 12 12 C 1.38227 * 120.03714 * 180.02562 * 11 10 9 13 13 C 1.38329 * 120.04412 * 359.97438 * 12 11 10 14 14 C 1.37922 * 119.91857 * 0.02562 * 13 12 11 15 15 C 1.37916 * 120.04335 * 61.10398 * 10 9 7 16 16 C 1.51083 * 132.69518 * 0.02562 * 15 10 9 17 17 O 1.44118 * 105.97215 * 197.67602 * 16 15 10 18 18 C 1.43941 * 104.86960 * 331.54350 * 17 16 15 19 19 C 1.52997 * 117.50078 * 236.45297 * 9 7 2 20 20 C 1.52998 * 117.49963 * 305.11691 * 9 7 2 21 21 H 0.97003 * 119.99563 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.98334 * 0.04042 * 11 10 9 23 23 H 1.08006 * 119.97327 * 179.97438 * 12 11 10 24 24 H 1.07997 * 120.04257 * 180.02562 * 13 12 11 25 25 H 1.09008 * 110.15363 * 316.78563 * 16 15 10 26 26 H 1.08997 * 110.15709 * 78.47016 * 16 15 10 27 27 H 1.09002 * 110.15126 * 269.30644 * 18 17 16 28 28 H 1.08994 * 110.15261 * 147.62168 * 18 17 16 29 29 H 1.08994 * 117.50153 * 215.00047 * 19 9 7 30 30 H 1.09000 * 117.49595 * 0.02778 * 19 9 7 31 31 H 1.09007 * 117.49790 * 359.97438 * 20 9 7 32 32 H 1.08998 * 117.50164 * 144.99381 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6065 1.9829 -1.3944 5 1 1.3962 2.6818 0.5874 6 1 3.4876 1.4742 0.8068 7 6 2.0045 -1.1941 -0.0005 8 1 1.4657 -2.1287 -0.0531 9 6 3.5098 -1.1953 0.0723 10 6 4.0932 -1.2530 1.4606 11 6 4.8939 -0.2221 1.9187 12 6 5.4295 -0.2752 3.1918 13 6 5.1651 -1.3591 4.0097 14 6 4.3668 -2.3869 3.5531 15 6 3.8299 -2.3338 2.2759 16 6 3.0156 -3.5911 2.0792 17 8 2.7755 -4.1186 3.3987 18 6 3.8996 -3.6784 4.1826 19 6 4.2705 -1.9134 -1.0441 20 6 4.2686 -0.3840 -0.9797 21 1 -0.4849 0.8401 -0.0004 22 1 5.1005 0.6249 1.2812 23 1 6.0548 0.5300 3.5482 24 1 5.5832 -1.4004 5.0046 25 1 2.0697 -3.3535 1.5922 26 1 3.5747 -4.3111 1.4817 27 1 4.6956 -4.4223 4.1484 28 1 3.5930 -3.5042 5.2139 29 1 5.1930 -2.4275 -0.7745 30 1 3.6823 -2.3846 -1.8315 31 1 3.6791 0.1503 -1.7249 32 1 5.1898 0.1081 -0.6678 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259909013.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:43 Heat of formation + Delta-G solvation = -3.243535 kcal Electronic energy + Delta-G solvation = -16063.584284 eV Core-core repulsion = 13568.320112 eV Total energy + Delta-G solvation = -2495.264172 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.61783 -39.13832 -37.40748 -34.26130 -32.17958 -31.97055 -28.67416 -27.91065 -25.68230 -23.73455 -23.16394 -22.08743 -20.51930 -18.69600 -17.43356 -17.11391 -17.00144 -16.62423 -16.35280 -15.51585 -14.85569 -14.76878 -14.55716 -14.27761 -13.73607 -13.47058 -13.12140 -12.97013 -12.87637 -12.43916 -12.20499 -12.04944 -11.73748 -11.48378 -11.17176 -10.96849 -10.69760 -10.38128 -9.39446 -9.32786 -8.30949 -6.38611 0.39409 0.54114 1.34525 1.38857 1.50486 2.37365 2.78053 3.01934 3.05587 3.22100 3.44895 3.81523 3.94214 4.22899 4.30959 4.38238 4.40502 4.50230 4.52339 4.59515 4.71114 4.79805 4.82425 5.00084 5.06045 5.10029 5.32373 5.42577 5.48618 5.57777 5.62263 5.74667 5.91295 6.15150 6.28024 6.68859 7.31147 8.83545 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.025343 B = 0.011394 C = 0.010249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.598131 B = 2456.815995 C = 2731.239524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.020 3.980 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.309 1.309 6 H -0.216 1.216 7 C -0.479 4.479 8 H 0.037 0.963 9 C 0.007 3.993 10 C -0.014 4.014 11 C -0.139 4.139 12 C -0.115 4.115 13 C -0.108 4.108 14 C -0.147 4.147 15 C -0.139 4.139 16 C 0.097 3.903 17 O -0.387 6.387 18 C 0.091 3.909 19 C -0.158 4.158 20 C -0.193 4.193 21 H 0.264 0.736 22 H 0.130 0.870 23 H 0.157 0.843 24 H 0.156 0.844 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.256 -1.678 6.732 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.237 1.237 6 H -0.138 1.138 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.006 3.994 10 C -0.015 4.015 11 C -0.157 4.157 12 C -0.132 4.132 13 C -0.126 4.126 14 C -0.148 4.148 15 C -0.139 4.139 16 C 0.021 3.979 17 O -0.306 6.306 18 C 0.015 3.985 19 C -0.196 4.196 20 C -0.230 4.230 21 H 0.073 0.927 22 H 0.147 0.853 23 H 0.174 0.826 24 H 0.174 0.826 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.916 -1.728 6.799 15.585 hybrid contribution -0.578 0.856 -0.567 1.178 sum 13.338 -0.872 6.233 14.749 Atomic orbital electron populations 1.70052 1.08437 1.28034 1.52211 1.25869 0.95241 1.03110 0.93539 0.86056 0.80533 0.77982 0.79648 1.19215 1.23720 1.13839 1.20332 0.88706 0.92833 1.49795 0.94520 1.18063 0.91867 1.03412 0.86027 1.19071 0.94195 0.92507 0.95716 1.21357 0.98442 0.98192 0.97713 1.21423 0.99890 0.98858 0.93072 1.20609 0.98625 0.92309 1.01044 1.21375 0.99854 0.98121 0.95420 1.20752 1.00426 0.96870 0.95853 1.21640 0.99602 0.91707 0.84941 1.89043 1.44937 1.74929 1.21694 1.21922 0.88957 0.91482 0.96109 1.22906 1.01390 0.93882 1.01378 1.23077 1.02091 0.94575 1.03272 0.92693 0.85270 0.82557 0.82604 0.90756 0.90003 0.88577 0.86980 0.88334 0.89891 0.90408 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.02 1.16 5.47 84.66 0.46 1.62 16 3 Si 0.93 43.84 24.81 68.60 1.70 45.55 16 4 H -0.27 -11.93 6.85 99.48 0.68 -11.25 16 5 H -0.31 -15.00 7.11 99.48 0.71 -14.29 16 6 H -0.22 -8.93 4.23 99.48 0.42 -8.51 16 7 C -0.48 -26.93 8.60 25.60 0.22 -26.71 16 8 H 0.04 2.31 7.30 -2.91 -0.02 2.29 16 9 C 0.01 0.32 0.96 -53.67 -0.05 0.27 16 10 C -0.01 -0.59 5.10 -19.92 -0.10 -0.69 16 11 C -0.14 -4.89 8.19 22.29 0.18 -4.71 16 12 C -0.11 -3.22 10.05 22.29 0.22 -3.00 16 13 C -0.11 -2.93 10.04 22.22 0.22 -2.71 16 14 C -0.15 -4.80 6.32 -19.72 -0.12 -4.92 16 15 C -0.14 -5.52 5.99 -19.72 -0.12 -5.64 16 16 C 0.10 3.88 7.32 71.36 0.52 4.40 16 17 O -0.39 -14.44 11.73 -148.98 -1.75 -16.18 16 18 C 0.09 2.58 7.62 71.36 0.54 3.12 16 19 C -0.16 -6.09 9.94 30.62 0.30 -5.79 16 20 C -0.19 -7.57 6.87 30.62 0.21 -7.36 16 21 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 22 H 0.13 4.29 5.40 -2.91 -0.02 4.27 16 23 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 24 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 25 H 0.07 3.51 6.72 -2.38 -0.02 3.49 16 26 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.08 3.25 6.40 -2.38 -0.02 3.23 16 32 H 0.11 3.50 6.90 -2.39 -0.02 3.48 16 Total: -1.00 -67.94 259.01 3.56 -64.38 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.81 Total: 17.92 kcal Atomic # 6 Polarization: -54.61 SS G_CDS: 2.50 Total: -52.11 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.30 Total: -59.55 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -1.75 Total: -16.18 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.70 Total: 45.55 kcal Total: -67.94 3.56 -64.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909013.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.137 kcal (2) G-P(sol) polarization free energy of solvation -67.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds