Wall clock time and date at job start Mon Mar 30 2020 03:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32096 * 120.56252 * 2 1 4 4 C 1.31895 * 121.00695 * 180.30753 * 3 2 1 5 5 N 1.31915 * 122.18731 * 359.68402 * 4 3 2 6 6 C 1.32069 * 121.00590 * 0.02562 * 5 4 3 7 7 C 1.40311 * 120.56368 * 179.73506 * 2 1 3 8 8 C 1.47200 * 120.97199 * 0.02562 * 7 2 1 9 9 N 1.36221 * 126.66184 * 244.69247 * 8 7 2 10 10 H 0.96999 * 125.78617 * 0.03760 * 9 8 7 11 11 N 1.39849 * 108.42477 * 180.02562 * 9 8 7 12 12 C 1.30215 * 109.66732 * 359.70618 * 11 9 8 13 13 C 1.40861 * 126.67330 * 64.71337 * 8 7 2 14 14 C 1.40893 * 126.62328 * 359.97438 * 13 8 7 15 15 H 1.07998 * 119.99957 * 11.04552 * 14 13 8 16 16 C 1.39876 * 120.00121 * 191.04241 * 14 13 8 17 17 N 1.30940 * 119.99652 * 9.42230 * 16 14 13 18 18 Si 1.86797 * 120.00171 * 189.42721 * 16 14 13 19 19 H 1.48500 * 109.47022 * 265.01978 * 18 16 14 20 20 H 1.48501 * 109.47092 * 25.02032 * 18 16 14 21 21 H 1.48502 * 109.47328 * 145.01967 * 18 16 14 22 22 H 1.09004 * 109.47253 * 270.26105 * 1 2 3 23 23 H 1.09000 * 109.47009 * 30.26522 * 1 2 3 24 24 H 1.09002 * 109.47327 * 150.26114 * 1 2 3 25 25 H 1.08003 * 118.90187 * 179.69708 * 4 3 2 26 26 H 1.07997 * 120.56260 * 180.02562 * 6 5 4 27 27 H 1.08000 * 125.75215 * 180.29136 * 12 11 9 28 28 H 0.97002 * 119.99780 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1374 0.0000 4 6 3.4975 1.1477 -0.0061 5 7 4.2089 0.0368 -0.0062 6 6 3.6225 -1.1466 -0.0008 7 6 2.2204 -1.2082 0.0056 8 6 1.5189 -2.5022 0.0110 9 7 1.5415 -3.4355 1.0030 10 1 2.0277 -3.3629 1.8392 11 7 0.7446 -4.5160 0.6115 12 6 0.2356 -4.2820 -0.5640 13 6 0.6940 -3.0163 -1.0086 14 6 0.3804 -2.3907 -2.2314 15 1 0.9205 -1.5080 -2.5406 16 6 -0.6305 -2.9128 -3.0451 17 7 -1.4076 -3.8652 -2.5938 18 14 -0.8717 -2.2517 -4.7754 19 1 -1.9166 -1.1965 -4.7609 20 1 0.4057 -1.6767 -5.2681 21 1 -1.2961 -3.3562 -5.6727 22 1 -0.3634 0.0047 1.0277 23 1 -0.3633 0.8876 -0.5179 24 1 -0.3634 -0.8923 -0.5098 25 1 4.0121 2.0972 -0.0109 26 1 4.2119 -2.0515 -0.0005 27 1 -0.4225 -4.9421 -1.1095 28 1 -2.1089 -4.2270 -3.1579 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259943923.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:24 Heat of formation + Delta-G solvation = 103.680723 kcal Electronic energy + Delta-G solvation = -15435.915970 eV Core-core repulsion = 12874.040789 eV Total energy + Delta-G solvation = -2561.875181 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43533 -39.03275 -33.97301 -33.64368 -32.58232 -29.85023 -28.82986 -27.77656 -25.17956 -23.46174 -22.22056 -20.12568 -19.45533 -17.47944 -16.99212 -16.26208 -15.59238 -14.99357 -14.38838 -13.54388 -13.26397 -12.99078 -12.89150 -12.44633 -12.34758 -11.94443 -11.64138 -11.36999 -11.16035 -11.00581 -10.37335 -10.20567 -9.99766 -9.42609 -9.23541 -8.96459 -8.60264 -7.99325 -7.32763 -6.75526 -4.22737 1.34990 1.60507 2.86987 3.08710 3.13352 3.21904 3.94133 4.11616 4.16948 4.37186 4.58430 4.69832 5.08523 5.27309 5.57544 5.76439 6.02287 6.16979 6.23493 6.48458 6.54622 6.80436 6.99820 7.09217 7.25836 7.33263 7.55209 7.86334 8.36045 8.59527 8.60642 8.79313 8.87020 9.24966 10.23422 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.010779 C = 0.008446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.778274 B = 2597.077461 C = 3314.244607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.186 3.814 3 N -0.525 5.525 4 C 0.263 3.737 5 N -0.529 5.529 6 C 0.133 3.867 7 C -0.055 4.055 8 C -0.092 4.092 9 N -0.500 5.500 10 H 0.414 0.586 11 N -0.312 5.312 12 C 0.031 3.969 13 C 0.028 3.972 14 C -0.428 4.428 15 H 0.071 0.929 16 C 0.074 3.926 17 N -0.817 5.817 18 Si 0.910 3.090 19 H -0.271 1.271 20 H -0.264 1.264 21 H -0.276 1.276 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.115 0.885 25 H 0.185 0.815 26 H 0.159 0.841 27 H 0.194 0.806 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 4.188 1.842 5.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.039 3.961 3 N -0.239 5.239 4 C -0.025 4.025 5 N -0.243 5.243 6 C -0.033 4.033 7 C -0.061 4.061 8 C -0.212 4.212 9 N -0.216 5.216 10 H 0.254 0.746 11 N -0.134 5.134 12 C -0.158 4.158 13 C 0.018 3.982 14 C -0.461 4.461 15 H 0.089 0.911 16 C -0.141 4.141 17 N -0.445 5.445 18 Si 0.735 3.265 19 H -0.196 1.196 20 H -0.188 1.188 21 H -0.201 1.201 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.133 0.867 25 H 0.202 0.798 26 H 0.176 0.824 27 H 0.210 0.790 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.110 4.120 2.643 5.799 hybrid contribution -0.232 0.156 -1.109 1.144 sum 2.878 4.276 1.533 5.377 Atomic orbital electron populations 1.20949 0.87691 1.05630 1.02641 1.22108 0.97645 0.87024 0.89293 1.68141 1.10121 1.30777 1.14908 1.24651 0.86994 0.96671 0.94199 1.68202 1.42030 0.99202 1.14888 1.23498 0.91874 0.95479 0.92413 1.19513 0.93591 0.93052 0.99987 1.18645 1.15252 0.92527 0.94742 1.45461 1.44264 1.15055 1.16790 0.74589 1.76368 1.10616 1.09107 1.17337 1.24552 1.01039 0.97873 0.92357 1.18023 0.94185 0.92726 0.93301 1.18690 1.15437 1.10774 1.01199 0.91086 1.25750 0.94320 0.94137 0.99911 1.69591 1.15086 1.22895 1.36973 0.86248 0.79447 0.79161 0.81636 1.19599 1.18809 1.20135 0.91163 0.91217 0.86672 0.79801 0.82366 0.78991 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 9.86 36.00 0.36 -1.74 15 2 C 0.19 3.67 6.88 -81.70 -0.56 3.10 15 3 N -0.52 -9.73 10.36 -10.38 -0.11 -9.84 15 4 C 0.26 4.40 12.27 -91.96 -1.13 3.27 15 5 N -0.53 -9.39 10.42 -14.14 -0.15 -9.54 15 6 C 0.13 2.45 11.11 -16.66 -0.19 2.26 15 7 C -0.06 -1.11 5.59 -104.69 -0.58 -1.69 15 8 C -0.09 -2.02 6.01 -81.29 -0.49 -2.51 15 9 N -0.50 -10.48 7.37 33.89 0.25 -10.23 15 10 H 0.41 7.31 8.96 -182.79 -1.64 5.67 15 11 N -0.31 -7.26 12.57 30.93 0.39 -6.87 15 12 C 0.03 0.76 10.83 -16.89 -0.18 0.58 15 13 C 0.03 0.68 4.98 -106.55 -0.53 0.15 15 14 C -0.43 -10.55 7.66 -37.97 -0.29 -10.84 15 15 H 0.07 1.77 7.83 -52.49 -0.41 1.36 15 16 C 0.07 1.74 5.45 -17.32 -0.09 1.65 15 17 N -0.82 -19.52 10.62 55.55 0.59 -18.93 15 18 Si 0.91 18.26 29.57 -169.99 -5.03 13.23 15 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 15 21 H -0.28 -5.44 7.11 56.52 0.40 -5.04 15 22 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.11 2.47 4.78 -51.93 -0.25 2.22 15 25 H 0.19 2.35 8.06 -52.48 -0.42 1.93 15 26 H 0.16 2.62 8.06 -52.49 -0.42 2.20 15 27 H 0.19 4.77 6.13 -52.49 -0.32 4.45 15 28 H 0.28 6.15 8.30 -40.82 -0.34 5.82 15 LS Contribution 251.28 15.07 3.79 3.79 Total: -1.00 -26.57 251.28 -7.40 -33.97 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -3.44 Total: 10.19 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.69 Total: -5.77 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.97 Total: -55.41 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.57 -7.40 -33.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943923.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.650 kcal (2) G-P(sol) polarization free energy of solvation -26.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds