Wall clock time and date at job start Mon Mar 30 2020 03:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32096 * 120.56252 * 2 1 4 4 C 1.31895 * 121.00695 * 180.30753 * 3 2 1 5 5 N 1.31915 * 122.18731 * 359.68402 * 4 3 2 6 6 C 1.32069 * 121.00590 * 0.02562 * 5 4 3 7 7 C 1.40311 * 120.56368 * 179.73506 * 2 1 3 8 8 C 1.47200 * 120.97199 * 0.02562 * 7 2 1 9 9 N 1.36221 * 126.66184 * 244.69247 * 8 7 2 10 10 H 0.96999 * 125.78617 * 0.03760 * 9 8 7 11 11 N 1.39849 * 108.42477 * 180.02562 * 9 8 7 12 12 C 1.30215 * 109.66732 * 359.70618 * 11 9 8 13 13 C 1.40861 * 126.67330 * 64.71337 * 8 7 2 14 14 C 1.40893 * 126.62328 * 359.97438 * 13 8 7 15 15 H 1.07998 * 119.99957 * 11.04552 * 14 13 8 16 16 C 1.39876 * 120.00121 * 191.04241 * 14 13 8 17 17 N 1.30940 * 119.99652 * 9.42230 * 16 14 13 18 18 Si 1.86797 * 120.00171 * 189.42721 * 16 14 13 19 19 H 1.48500 * 109.47022 * 265.01978 * 18 16 14 20 20 H 1.48501 * 109.47092 * 25.02032 * 18 16 14 21 21 H 1.48502 * 109.47328 * 145.01967 * 18 16 14 22 22 H 1.09004 * 109.47253 * 270.26105 * 1 2 3 23 23 H 1.09000 * 109.47009 * 30.26522 * 1 2 3 24 24 H 1.09002 * 109.47327 * 150.26114 * 1 2 3 25 25 H 1.08003 * 118.90187 * 179.69708 * 4 3 2 26 26 H 1.07997 * 120.56260 * 180.02562 * 6 5 4 27 27 H 1.08000 * 125.75215 * 180.29136 * 12 11 9 28 28 H 0.97002 * 119.99780 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1374 0.0000 4 6 3.4975 1.1477 -0.0061 5 7 4.2089 0.0368 -0.0062 6 6 3.6225 -1.1466 -0.0008 7 6 2.2204 -1.2082 0.0056 8 6 1.5189 -2.5022 0.0110 9 7 1.5415 -3.4355 1.0030 10 1 2.0277 -3.3629 1.8392 11 7 0.7446 -4.5160 0.6115 12 6 0.2356 -4.2820 -0.5640 13 6 0.6940 -3.0163 -1.0086 14 6 0.3804 -2.3907 -2.2314 15 1 0.9205 -1.5080 -2.5406 16 6 -0.6305 -2.9128 -3.0451 17 7 -1.4076 -3.8652 -2.5938 18 14 -0.8717 -2.2517 -4.7754 19 1 -1.9166 -1.1965 -4.7609 20 1 0.4057 -1.6767 -5.2681 21 1 -1.2961 -3.3562 -5.6727 22 1 -0.3634 0.0047 1.0277 23 1 -0.3633 0.8876 -0.5179 24 1 -0.3634 -0.8923 -0.5098 25 1 4.0121 2.0972 -0.0109 26 1 4.2119 -2.0515 -0.0005 27 1 -0.4225 -4.9421 -1.1095 28 1 -2.1089 -4.2270 -3.1579 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259943923.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:23 Heat of formation + Delta-G solvation = 87.842200 kcal Electronic energy + Delta-G solvation = -15436.602780 eV Core-core repulsion = 12874.040789 eV Total energy + Delta-G solvation = -2562.561991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.94727 -40.76811 -35.59861 -35.24155 -34.12914 -31.63328 -30.51848 -29.31149 -26.88417 -25.03406 -23.69088 -21.93614 -21.20880 -19.22425 -18.45165 -17.68881 -17.31106 -16.67178 -15.86342 -15.26730 -14.82378 -14.61543 -14.54969 -13.91871 -13.84838 -13.68993 -13.19920 -13.01601 -12.79066 -12.74442 -11.98054 -11.78423 -11.45263 -11.15174 -11.01277 -10.52877 -10.12271 -9.73408 -9.10463 -8.48434 -6.04385 -0.11845 0.12204 1.20856 1.45616 1.52066 1.56467 2.27893 2.34132 2.51870 2.86276 3.21540 3.31363 3.47328 3.61110 4.05274 4.24655 4.59146 4.70636 4.74025 4.75479 5.01292 5.19899 5.31233 5.46064 5.55310 5.61561 6.00995 6.06973 6.51319 6.86417 7.06587 7.08498 7.16370 7.44902 8.52598 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.010779 C = 0.008446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.778274 B = 2597.077461 C = 3314.244607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.183 3.817 3 N -0.533 5.533 4 C 0.274 3.726 5 N -0.532 5.532 6 C 0.145 3.855 7 C -0.084 4.084 8 C -0.065 4.065 9 N -0.483 5.483 10 H 0.430 0.570 11 N -0.323 5.323 12 C 0.010 3.990 13 C -0.006 4.006 14 C -0.449 4.449 15 H 0.059 0.941 16 C 0.038 3.962 17 N -0.843 5.843 18 Si 0.969 3.031 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.269 1.269 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.228 0.772 26 H 0.176 0.824 27 H 0.183 0.817 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 5.767 2.038 7.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.036 3.964 3 N -0.248 5.248 4 C -0.013 4.013 5 N -0.246 5.246 6 C -0.021 4.021 7 C -0.091 4.091 8 C -0.188 4.188 9 N -0.199 5.199 10 H 0.273 0.727 11 N -0.147 5.147 12 C -0.177 4.177 13 C -0.016 4.016 14 C -0.482 4.482 15 H 0.078 0.922 16 C -0.174 4.174 17 N -0.473 5.473 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.194 1.194 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.244 0.756 26 H 0.193 0.807 27 H 0.200 0.800 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.294 5.687 2.862 7.679 hybrid contribution -0.439 -0.196 -1.008 1.117 sum 3.855 5.491 1.854 6.961 Atomic orbital electron populations 1.20871 0.87568 1.04853 1.03265 1.22210 0.98054 0.87335 0.88766 1.68244 1.10980 1.29955 1.15612 1.25573 0.86576 0.98000 0.91155 1.68352 1.41801 0.99181 1.15305 1.23727 0.91152 0.96575 0.90656 1.19509 0.94479 0.92251 1.02838 1.18869 1.13395 0.92851 0.93690 1.45538 1.43054 1.14154 1.17171 0.72652 1.76321 1.11387 1.09949 1.17058 1.24423 1.01986 0.98296 0.92984 1.18258 0.95877 0.93130 0.94311 1.18654 1.16441 1.11049 1.02099 0.92244 1.26367 0.93866 0.94386 1.02759 1.69639 1.15663 1.23873 1.38100 0.85355 0.78913 0.78710 0.77764 1.19081 1.19460 1.19385 0.89827 0.89922 0.89433 0.75592 0.80737 0.80038 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.97 9.86 71.23 0.70 -3.26 15 2 C 0.18 6.90 6.88 43.02 0.30 7.19 15 3 N -0.53 -18.28 10.36 -186.76 -1.93 -20.21 15 4 C 0.27 8.16 12.27 180.82 2.22 10.38 15 5 N -0.53 -17.13 10.42 -198.66 -2.07 -19.20 15 6 C 0.14 4.97 11.11 85.17 0.95 5.91 15 7 C -0.08 -3.27 5.59 -19.91 -0.11 -3.38 15 8 C -0.07 -2.85 6.01 41.46 0.25 -2.60 15 9 N -0.48 -19.82 7.37 -46.68 -0.34 -20.16 15 10 H 0.43 14.47 8.96 -213.48 -1.91 12.56 15 11 N -0.32 -15.10 12.57 -56.07 -0.70 -15.80 15 12 C 0.01 0.52 10.83 85.81 0.93 1.45 15 13 C -0.01 -0.29 4.98 -21.11 -0.11 -0.39 15 14 C -0.45 -22.60 7.66 23.32 0.18 -22.42 15 15 H 0.06 3.02 7.83 -2.91 -0.02 3.00 15 16 C 0.04 1.83 5.45 85.22 0.46 2.30 15 17 N -0.84 -41.33 10.62 21.82 0.23 -41.10 15 18 Si 0.97 37.75 29.57 68.60 2.03 39.78 15 19 H -0.27 -10.03 7.11 99.48 0.71 -9.33 15 20 H -0.27 -10.65 7.11 99.48 0.71 -9.95 15 21 H -0.27 -10.05 7.11 99.48 0.71 -9.35 15 22 H 0.08 2.77 8.14 -2.39 -0.02 2.75 15 23 H 0.08 2.74 8.14 -2.39 -0.02 2.72 15 24 H 0.09 3.78 4.78 -2.39 -0.01 3.77 15 25 H 0.23 4.64 8.06 -2.91 -0.02 4.62 15 26 H 0.18 5.32 8.06 -2.91 -0.02 5.29 15 27 H 0.18 9.42 6.13 -2.91 -0.02 9.40 15 28 H 0.28 12.79 8.30 -92.71 -0.77 12.02 15 Total: -1.00 -56.28 251.28 2.27 -54.01 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -0.70 Total: 27.52 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.77 Total: -4.83 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -4.82 Total: -116.48 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -56.28 2.27 -54.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943923.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.851 kcal (2) G-P(sol) polarization free energy of solvation -56.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds