Wall clock time and date at job start Mon Mar 30 2020 03:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39903 * 109.46813 * 2 1 4 4 F 1.39905 * 109.47218 * 240.00576 * 2 1 3 5 5 C 1.52992 * 109.47485 * 120.00299 * 2 1 3 6 6 N 1.46500 * 109.47291 * 180.02562 * 5 2 1 7 7 N 1.40084 * 126.03708 * 270.28671 * 6 5 2 8 8 C 1.30834 * 108.20770 * 180.17238 * 7 6 5 9 9 C 1.39876 * 108.20073 * 359.58566 * 8 7 6 10 10 C 1.34947 * 126.04040 * 90.00121 * 6 5 2 11 11 C 1.50709 * 126.12387 * 0.03254 * 10 6 5 12 12 C 1.50700 * 109.46927 * 264.98715 * 11 10 6 13 13 H 1.08003 * 120.00185 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99785 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00318 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00106 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47025 * 90.00136 * 16 14 12 18 18 H 1.48500 * 109.47007 * 210.00248 * 16 14 12 19 19 H 1.48497 * 109.46825 * 329.99791 * 16 14 12 20 20 H 1.08995 * 109.47136 * 299.99801 * 1 2 3 21 21 H 1.08995 * 109.47460 * 59.99799 * 1 2 3 22 22 H 1.09004 * 109.46888 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47581 * 60.00002 * 5 2 1 24 24 H 1.09011 * 109.47029 * 299.99940 * 5 2 1 25 25 H 1.08002 * 125.90318 * 179.85840 * 8 7 6 26 26 H 1.07992 * 126.04019 * 180.28605 * 9 8 7 27 27 H 1.09002 * 109.47035 * 24.98631 * 11 10 6 28 28 H 1.08995 * 109.46723 * 144.98873 * 11 10 6 29 29 H 0.96999 * 120.00369 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1424 5 6 2.0400 -0.7213 1.2491 6 7 3.5050 -0.7207 1.2494 7 7 4.3297 -1.6984 0.6780 8 6 5.5750 -1.3540 0.8836 9 6 5.5835 -0.1427 1.5831 10 6 4.2986 0.2245 1.7953 11 6 3.8363 1.4662 2.5134 12 6 3.7998 2.6215 1.5464 13 1 4.0833 2.4716 0.5151 14 6 3.4054 3.8699 1.9785 15 7 3.3739 4.8783 1.1348 16 14 2.9157 4.1293 3.7625 17 1 4.1136 4.5068 4.5547 18 1 1.9051 5.2142 3.8457 19 1 2.3391 2.8730 4.3051 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6768 -1.7489 1.2491 24 1 1.6767 -0.2074 2.1392 25 1 6.4460 -1.9069 0.5641 26 1 6.4606 0.4031 1.8979 27 1 2.8385 1.3008 2.9198 28 1 4.5263 1.6941 3.3258 29 1 3.0968 5.7567 1.4389 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259981505.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:15 Heat of formation + Delta-G solvation = -27.511227 kcal Electronic energy + Delta-G solvation = -16708.328371 eV Core-core repulsion = 13690.075093 eV Total energy + Delta-G solvation = -3018.253277 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.33721 -46.29748 -40.48614 -33.98085 -33.31350 -31.24797 -30.54520 -27.39102 -26.31138 -22.75245 -21.76388 -20.42346 -19.09346 -17.12076 -16.84073 -16.47834 -16.14708 -15.24849 -14.33129 -13.87285 -13.63791 -13.44793 -13.14790 -12.80042 -12.65201 -12.51886 -12.41093 -12.08917 -11.88975 -11.76884 -11.63481 -10.83125 -10.75306 -10.45457 -10.13357 -9.96864 -9.38772 -8.60139 -8.56722 -7.73396 -6.06664 -4.05087 2.53337 2.95072 3.24283 3.31228 3.32789 3.56482 4.08024 4.37494 4.40052 4.52887 4.87303 5.08142 5.23019 5.34318 5.53642 5.62558 5.69033 5.88328 5.94244 6.14636 6.49102 6.59731 6.79330 7.16807 7.30040 7.52638 7.70191 8.36177 8.48052 9.01987 9.50929 11.06283 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.012019 C = 0.009365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.398060 B = 2329.149285 C = 2989.022627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.263 3.737 3 F -0.156 7.156 4 F -0.200 7.200 5 C 0.102 3.898 6 N -0.380 5.380 7 N -0.317 5.317 8 C 0.047 3.953 9 C -0.292 4.292 10 C 0.150 3.850 11 C 0.039 3.961 12 C -0.499 4.499 13 H 0.079 0.921 14 C 0.073 3.927 15 N -0.894 5.894 16 Si 0.871 3.129 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.268 1.268 20 H 0.091 0.909 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.111 0.889 24 H 0.118 0.882 25 H 0.175 0.825 26 H 0.142 0.858 27 H 0.024 0.976 28 H 0.041 0.959 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 -10.210 1.946 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.226 3.774 3 F -0.136 7.136 4 F -0.181 7.181 5 C -0.022 4.022 6 N -0.163 5.163 7 N -0.137 5.137 8 C -0.139 4.139 9 C -0.321 4.321 10 C 0.024 3.976 11 C 0.000 4.000 12 C -0.537 4.537 13 H 0.097 0.903 14 C -0.129 4.129 15 N -0.533 5.533 16 Si 0.698 3.302 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.193 1.193 20 H 0.110 0.890 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.129 0.871 24 H 0.136 0.864 25 H 0.192 0.808 26 H 0.160 0.840 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.589 -10.878 1.393 12.309 hybrid contribution 0.372 0.995 1.047 1.492 sum -5.217 -9.883 2.441 11.439 Atomic orbital electron populations 1.22740 0.91659 1.04784 1.05874 1.21497 0.93505 0.78414 0.84017 1.93371 1.89799 1.34009 1.96463 1.93016 1.90636 1.81167 1.53295 1.22553 0.77761 1.03378 0.98535 1.48125 1.04640 1.18269 1.45239 1.77219 1.01641 1.13422 1.21368 1.23701 0.94970 0.96648 0.98602 1.21117 0.96676 1.00425 1.13861 1.21643 0.90611 0.90928 0.94448 1.18529 0.96379 0.89085 0.95961 1.20748 1.45229 0.90772 0.96984 0.90295 1.24907 0.95126 0.95836 0.96999 1.69888 1.47871 1.00886 1.34620 0.86927 0.78951 0.78157 0.86130 1.20046 1.21196 1.19251 0.89016 0.89649 0.89722 0.87107 0.86425 0.80766 0.83986 0.95781 0.94120 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 9.38 37.16 0.35 -1.98 15 2 C 0.26 4.59 2.25 -26.74 -0.06 4.53 15 3 F -0.16 -3.56 14.17 2.25 0.03 -3.53 15 4 F -0.20 -3.89 16.98 2.25 0.04 -3.85 15 5 C 0.10 1.66 5.76 -4.05 -0.02 1.63 15 6 N -0.38 -7.69 3.47 -57.14 -0.20 -7.89 15 7 N -0.32 -6.39 12.58 30.63 0.39 -6.00 15 8 C 0.05 0.87 12.03 -17.36 -0.21 0.66 15 9 C -0.29 -5.93 10.72 -40.01 -0.43 -6.36 15 10 C 0.15 3.27 5.91 -82.26 -0.49 2.78 15 11 C 0.04 0.91 4.25 -29.03 -0.12 0.79 15 12 C -0.50 -13.73 7.62 -34.44 -0.26 -13.99 15 13 H 0.08 2.48 7.59 -52.48 -0.40 2.08 15 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 15 N -0.89 -26.89 13.96 55.43 0.77 -26.12 15 16 Si 0.87 20.47 27.47 -169.99 -4.67 15.80 15 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 19 H -0.27 -5.89 6.54 56.52 0.37 -5.52 15 20 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.11 1.45 8.14 -51.93 -0.42 1.02 15 24 H 0.12 1.72 6.97 -51.92 -0.36 1.35 15 25 H 0.18 2.48 8.06 -52.49 -0.42 2.05 15 26 H 0.14 2.67 8.06 -52.49 -0.42 2.24 15 27 H 0.02 0.53 6.00 -51.93 -0.31 0.22 15 28 H 0.04 0.92 7.57 -51.93 -0.39 0.52 15 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 257.89 15.07 3.89 3.89 Total: -1.00 -33.14 257.89 -4.26 -37.40 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.17 Total: 0.28 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.34 Total: -9.99 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.96 Total: -40.00 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.07 Total: -7.38 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.14 -4.26 -37.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259981505.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.892 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds