Wall clock time and date at job start Mon Mar 30 2020 03:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39903 * 109.46813 * 2 1 4 4 F 1.39905 * 109.47218 * 240.00576 * 2 1 3 5 5 C 1.52992 * 109.47485 * 120.00299 * 2 1 3 6 6 N 1.46500 * 109.47291 * 180.02562 * 5 2 1 7 7 N 1.40084 * 126.03708 * 270.28671 * 6 5 2 8 8 C 1.30834 * 108.20770 * 180.17238 * 7 6 5 9 9 C 1.39876 * 108.20073 * 359.58566 * 8 7 6 10 10 C 1.34947 * 126.04040 * 90.00121 * 6 5 2 11 11 C 1.50709 * 126.12387 * 0.03254 * 10 6 5 12 12 C 1.50700 * 109.46927 * 264.98715 * 11 10 6 13 13 H 1.08003 * 120.00185 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99785 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00318 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00106 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47025 * 90.00136 * 16 14 12 18 18 H 1.48500 * 109.47007 * 210.00248 * 16 14 12 19 19 H 1.48497 * 109.46825 * 329.99791 * 16 14 12 20 20 H 1.08995 * 109.47136 * 299.99801 * 1 2 3 21 21 H 1.08995 * 109.47460 * 59.99799 * 1 2 3 22 22 H 1.09004 * 109.46888 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47581 * 60.00002 * 5 2 1 24 24 H 1.09011 * 109.47029 * 299.99940 * 5 2 1 25 25 H 1.08002 * 125.90318 * 179.85840 * 8 7 6 26 26 H 1.07992 * 126.04019 * 180.28605 * 9 8 7 27 27 H 1.09002 * 109.47035 * 24.98631 * 11 10 6 28 28 H 1.08995 * 109.46723 * 144.98873 * 11 10 6 29 29 H 0.96999 * 120.00369 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1424 5 6 2.0400 -0.7213 1.2491 6 7 3.5050 -0.7207 1.2494 7 7 4.3297 -1.6984 0.6780 8 6 5.5750 -1.3540 0.8836 9 6 5.5835 -0.1427 1.5831 10 6 4.2986 0.2245 1.7953 11 6 3.8363 1.4662 2.5134 12 6 3.7998 2.6215 1.5464 13 1 4.0833 2.4716 0.5151 14 6 3.4054 3.8699 1.9785 15 7 3.3739 4.8783 1.1348 16 14 2.9157 4.1293 3.7625 17 1 4.1136 4.5068 4.5547 18 1 1.9051 5.2142 3.8457 19 1 2.3391 2.8730 4.3051 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6768 -1.7489 1.2491 24 1 1.6767 -0.2074 2.1392 25 1 6.4460 -1.9069 0.5641 26 1 6.4606 0.4031 1.8979 27 1 2.8385 1.3008 2.9198 28 1 4.5263 1.6941 3.3258 29 1 3.0968 5.7567 1.4389 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259981505.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:15 Heat of formation + Delta-G solvation = -49.661608 kcal Electronic energy + Delta-G solvation = -16709.288883 eV Core-core repulsion = 13690.075093 eV Total energy + Delta-G solvation = -3019.213790 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.81563 -47.83721 -42.00778 -35.49995 -35.11608 -33.03276 -31.89940 -29.19537 -27.57882 -24.71011 -23.09919 -21.90036 -20.64954 -19.04642 -18.38417 -18.02260 -17.58673 -16.72065 -16.21067 -15.33056 -15.23164 -15.04030 -14.63912 -14.53717 -14.14490 -13.98396 -13.67529 -13.51402 -13.38438 -13.10996 -13.09316 -12.63826 -12.32174 -12.13105 -11.87064 -11.58382 -11.48813 -10.71785 -10.09458 -9.33199 -8.20448 -6.24619 0.97740 1.41080 1.42117 1.51698 1.57238 2.03073 2.39914 2.82001 3.11868 3.21177 3.31303 3.63511 3.90269 4.04595 4.20625 4.31554 4.53633 4.58860 4.78574 4.92438 4.93301 4.98543 5.02901 5.50354 5.53140 5.85152 6.07765 6.34810 6.79176 6.83628 7.35066 8.96645 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.012019 C = 0.009365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.398060 B = 2329.149285 C = 2989.022627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.245 3.755 3 F -0.196 7.196 4 F -0.217 7.217 5 C 0.093 3.907 6 N -0.385 5.385 7 N -0.331 5.331 8 C 0.051 3.949 9 C -0.304 4.304 10 C 0.120 3.880 11 C 0.047 3.953 12 C -0.492 4.492 13 H 0.022 0.978 14 C 0.011 3.989 15 N -0.949 5.949 16 Si 0.945 3.055 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.237 1.237 20 H 0.107 0.893 21 H 0.082 0.918 22 H 0.120 0.880 23 H 0.147 0.853 24 H 0.135 0.865 25 H 0.215 0.785 26 H 0.150 0.850 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.561 -11.854 3.884 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.208 3.792 3 F -0.177 7.177 4 F -0.198 7.198 5 C -0.030 4.030 6 N -0.167 5.167 7 N -0.151 5.151 8 C -0.135 4.135 9 C -0.332 4.332 10 C -0.007 4.007 11 C 0.008 3.992 12 C -0.531 4.531 13 H 0.040 0.960 14 C -0.186 4.186 15 N -0.590 5.590 16 Si 0.768 3.232 17 H -0.192 1.192 18 H -0.213 1.213 19 H -0.160 1.160 20 H 0.126 0.874 21 H 0.101 0.899 22 H 0.139 0.861 23 H 0.164 0.836 24 H 0.153 0.847 25 H 0.232 0.768 26 H 0.168 0.832 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.503 -12.558 3.331 14.528 hybrid contribution 0.710 1.448 0.312 1.643 sum -5.792 -11.110 3.643 13.048 Atomic orbital electron populations 1.22758 0.87229 1.07386 1.06561 1.22277 0.96597 0.76420 0.83895 1.93283 1.90673 1.37146 1.96643 1.92972 1.91194 1.81272 1.54401 1.22980 0.75925 1.05590 0.98499 1.48405 1.05974 1.17701 1.44666 1.77171 1.02413 1.13921 1.21552 1.24310 0.95720 0.96083 0.97363 1.21446 0.96661 1.01241 1.13874 1.21594 0.91758 0.91361 0.95964 1.18358 0.97559 0.88088 0.95214 1.20749 1.44366 0.92694 0.95297 0.95984 1.25865 0.95105 0.95231 1.02395 1.70071 1.49833 1.01621 1.37495 0.85747 0.78809 0.79185 0.79447 1.19240 1.21275 1.16021 0.87397 0.89941 0.86141 0.83566 0.84698 0.76818 0.83192 0.94099 0.93003 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.97 9.38 71.98 0.68 -3.30 15 2 C 0.25 8.33 2.25 30.59 0.07 8.40 15 3 F -0.20 -9.22 14.17 44.97 0.64 -8.58 15 4 F -0.22 -8.40 16.98 44.97 0.76 -7.63 15 5 C 0.09 2.81 5.76 86.38 0.50 3.31 15 6 N -0.38 -15.04 3.47 -334.70 -1.16 -16.20 15 7 N -0.33 -12.79 12.58 -57.02 -0.72 -13.51 15 8 C 0.05 1.80 12.03 85.24 1.03 2.83 15 9 C -0.30 -12.04 10.72 21.99 0.24 -11.81 15 10 C 0.12 5.14 5.91 41.41 0.24 5.39 15 11 C 0.05 2.11 4.25 29.10 0.12 2.23 15 12 C -0.49 -27.67 7.62 25.60 0.20 -27.48 15 13 H 0.02 1.45 7.59 -2.91 -0.02 1.43 15 14 C 0.01 0.61 5.47 84.65 0.46 1.07 15 15 N -0.95 -58.95 13.96 21.45 0.30 -58.65 15 16 Si 0.95 41.51 27.47 68.60 1.88 43.40 15 17 H -0.27 -11.37 7.11 99.48 0.71 -10.67 15 18 H -0.29 -12.56 7.11 99.48 0.71 -11.85 15 19 H -0.24 -9.17 6.54 99.48 0.65 -8.52 15 20 H 0.11 2.01 8.14 -2.39 -0.02 1.99 15 21 H 0.08 1.86 8.14 -2.39 -0.02 1.84 15 22 H 0.12 1.76 8.14 -2.38 -0.02 1.74 15 23 H 0.15 3.31 8.14 -2.39 -0.02 3.29 15 24 H 0.14 3.55 6.97 -2.38 -0.02 3.54 15 25 H 0.22 5.44 8.06 -2.91 -0.02 5.42 15 26 H 0.15 5.52 8.06 -2.91 -0.02 5.50 15 27 H 0.04 1.70 6.00 -2.39 -0.01 1.69 15 28 H 0.05 2.23 7.57 -2.39 -0.02 2.21 15 29 H 0.26 15.34 8.31 -92.71 -0.77 14.57 15 Total: -1.00 -74.69 257.89 6.33 -68.35 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.10 Total: 12.18 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 3.53 Total: -19.36 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -1.58 Total: -88.36 kcal Atomic # 9 Polarization: -17.61 SS G_CDS: 1.40 Total: -16.21 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.88 Total: 43.40 kcal Total: -74.69 6.33 -68.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259981505.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.693 kcal (2) G-P(sol) polarization free energy of solvation -74.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds