Wall clock time and date at job start Mon Mar 30 2020 03:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39434 * 125.65849 * 2 1 4 4 C 1.37727 * 107.68636 * 180.14807 * 3 2 1 5 5 C 1.47820 * 126.43504 * 179.87569 * 4 3 2 6 6 C 1.40228 * 120.00551 * 179.73581 * 5 4 3 7 7 N 1.32132 * 120.27736 * 179.97438 * 6 5 4 8 8 C 1.31918 * 120.30098 * 359.72778 * 7 6 5 9 9 C 1.40834 * 120.00542 * 0.52427 * 8 7 6 10 10 C 1.41303 * 120.13824 * 179.75438 * 9 8 7 11 11 H 1.08001 * 119.99631 * 5.97207 * 10 9 8 12 12 C 1.40035 * 120.00029 * 185.70446 * 10 9 8 13 13 N 1.30730 * 120.00019 * 354.03086 * 12 10 9 14 14 Si 1.86805 * 119.99601 * 174.03279 * 12 10 9 15 15 H 1.48498 * 109.47380 * 0.02562 * 14 12 10 16 16 H 1.48510 * 109.46734 * 120.00082 * 14 12 10 17 17 H 1.48503 * 109.47006 * 239.99360 * 14 12 10 18 18 N 1.32678 * 120.00027 * 359.72163 * 5 4 3 19 19 N 1.36397 * 107.13075 * 359.62037 * 4 3 2 20 20 H 0.97008 * 126.12220 * 180.27590 * 19 4 3 21 21 N 1.30900 * 125.65850 * 179.71452 * 2 1 3 22 22 H 1.09001 * 109.47572 * 270.25609 * 1 2 3 23 23 H 1.08999 * 109.47350 * 30.26266 * 1 2 3 24 24 H 1.09005 * 109.46805 * 150.25404 * 1 2 3 25 25 H 1.08002 * 126.15392 * 0.03108 * 3 2 1 26 26 H 1.08006 * 119.85993 * 0.02562 * 6 5 4 27 27 H 1.08001 * 119.99488 * 180.28120 * 8 7 6 28 28 H 0.97003 * 119.99961 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3198 1.1329 0.0000 4 6 3.6298 0.7080 -0.0034 5 6 4.8319 1.5683 -0.0072 6 6 6.1089 0.9890 -0.0048 7 7 7.1870 1.7529 -0.0087 8 6 7.0715 3.0670 -0.0203 9 6 5.7950 3.6619 -0.0174 10 6 5.6681 5.0692 -0.0245 11 1 6.5457 5.6899 -0.1295 12 6 4.4040 5.6589 0.0989 13 7 3.3316 4.9113 0.1032 14 14 4.2502 7.5138 0.2572 15 1 5.6022 8.1273 0.2246 16 1 3.4404 8.0414 -0.8704 17 1 3.5854 7.8475 1.5425 18 7 4.7025 2.8888 -0.0132 19 7 3.6098 -0.6559 0.0032 20 1 4.3850 -1.2391 0.0066 21 7 2.2700 -1.0636 0.0053 22 1 -0.3634 0.0046 1.0276 23 1 -0.3634 0.8876 -0.5179 24 1 -0.3633 -0.8923 -0.5099 25 1 1.9827 2.1590 0.0005 26 1 6.2116 -0.0862 -0.0006 27 1 7.9561 3.6866 -0.0280 28 1 2.4559 5.3198 0.1884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259982959.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:37 Heat of formation + Delta-G solvation = 103.177196 kcal Electronic energy + Delta-G solvation = -15024.765906 eV Core-core repulsion = 12462.868890 eV Total energy + Delta-G solvation = -2561.897015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51263 -38.86074 -34.21771 -32.93564 -32.16997 -30.74104 -28.53986 -27.53509 -26.10007 -23.36060 -22.19803 -20.02385 -19.27032 -17.93970 -16.81637 -15.82356 -15.34106 -14.93139 -14.46595 -14.10975 -13.16224 -13.14939 -12.81125 -12.52045 -12.40373 -11.92139 -11.69748 -11.50207 -11.46357 -10.91441 -10.45640 -10.16137 -10.01830 -9.70384 -9.61785 -8.77154 -8.34064 -7.63258 -7.48475 -6.67117 -4.84524 1.65941 2.62530 2.91268 2.96853 3.01204 3.05820 3.25300 3.52750 3.75531 4.53908 4.97943 5.24960 5.48243 5.60508 5.75726 5.85383 5.96028 6.03285 6.13038 6.29482 6.41280 6.69554 6.75424 6.90737 6.98536 7.29451 7.41618 7.72923 7.88475 8.18251 8.23399 8.48660 9.04037 9.60358 9.99047 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.024652 B = 0.008904 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.530962 B = 3143.974715 C = 4262.348692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.060 3.940 3 C -0.222 4.222 4 C 0.153 3.847 5 C 0.156 3.844 6 C -0.114 4.114 7 N -0.425 5.425 8 C -0.056 4.056 9 C 0.206 3.794 10 C -0.404 4.404 11 H 0.095 0.905 12 C 0.064 3.936 13 N -0.701 5.701 14 Si 0.915 3.085 15 H -0.258 1.258 16 H -0.271 1.271 17 H -0.270 1.270 18 N -0.428 5.428 19 N -0.475 5.475 20 H 0.435 0.565 21 N -0.304 5.304 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.160 0.840 26 H 0.121 0.879 27 H 0.138 0.862 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 -1.850 0.117 4.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C -0.251 4.251 4 C 0.025 3.975 5 C 0.006 3.994 6 C -0.273 4.273 7 N -0.136 5.136 8 C -0.228 4.228 9 C 0.080 3.920 10 C -0.435 4.435 11 H 0.113 0.887 12 C -0.164 4.164 13 N -0.321 5.321 14 Si 0.738 3.262 15 H -0.181 1.181 16 H -0.196 1.196 17 H -0.195 1.195 18 N -0.146 5.146 19 N -0.185 5.185 20 H 0.279 0.721 21 N -0.130 5.130 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.178 0.822 26 H 0.138 0.862 27 H 0.155 0.845 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.376 -3.101 0.135 5.365 hybrid contribution 0.422 1.309 0.092 1.378 sum -3.954 -1.792 0.227 4.347 Atomic orbital electron populations 1.20114 0.87133 1.02847 1.02536 1.22185 0.96775 0.91063 1.00470 1.21758 0.90088 1.00054 1.13243 1.19655 0.94591 0.82923 1.00373 1.19749 0.89339 0.92536 0.97750 1.22308 0.88862 0.98229 1.17934 1.67636 1.32346 1.06469 1.07163 1.23267 0.97681 0.90689 1.11135 1.19367 0.87489 0.94553 0.90599 1.19730 0.94329 0.89905 1.39570 0.88716 1.26167 0.95480 1.01084 0.93664 1.70068 0.98930 1.37105 1.26033 0.86137 0.79877 0.81304 0.78872 1.18114 1.19567 1.19534 1.69527 1.30404 1.00189 1.14484 1.46403 1.06732 1.04742 1.60637 0.72129 1.77052 0.86442 1.22712 1.26753 0.90932 0.90512 0.91447 0.82206 0.86179 0.84490 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.44 36.00 0.38 -0.51 15 2 C 0.06 1.07 7.18 -82.55 -0.59 0.48 15 3 C -0.22 -4.57 10.51 -39.32 -0.41 -4.99 15 4 C 0.15 3.28 7.03 -82.10 -0.58 2.71 15 5 C 0.16 3.74 6.76 -82.83 -0.56 3.18 15 6 C -0.11 -2.61 10.90 -16.68 -0.18 -2.79 15 7 N -0.43 -10.25 10.47 -12.00 -0.13 -10.38 15 8 C -0.06 -1.36 10.97 -16.53 -0.18 -1.55 15 9 C 0.21 5.34 6.54 -84.85 -0.56 4.78 15 10 C -0.40 -9.89 9.15 -37.74 -0.35 -10.24 15 11 H 0.09 2.12 7.85 -52.49 -0.41 1.70 15 12 C 0.06 1.48 5.49 -17.35 -0.10 1.38 15 13 N -0.70 -17.03 11.51 55.55 0.64 -16.39 15 14 Si 0.91 16.98 29.56 -169.99 -5.03 11.96 15 15 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 16 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 17 H -0.27 -5.00 7.11 56.52 0.40 -4.59 15 18 N -0.43 -11.22 7.80 -7.57 -0.06 -11.28 15 19 N -0.47 -8.78 7.30 33.47 0.24 -8.54 15 20 H 0.43 6.72 8.11 -182.63 -1.48 5.24 15 21 N -0.30 -5.66 12.67 33.59 0.43 -5.24 15 22 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.16 3.44 8.06 -52.49 -0.42 3.02 15 26 H 0.12 2.34 7.21 -52.48 -0.38 1.97 15 27 H 0.14 2.95 8.06 -52.49 -0.42 2.53 15 28 H 0.28 6.07 8.29 -40.82 -0.34 5.73 15 LS Contribution 257.61 15.07 3.88 3.88 Total: -1.00 -28.85 257.61 -6.67 -35.52 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -3.52 Total: 8.01 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -3.13 Total: -7.54 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 1.12 Total: -51.82 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.85 -6.67 -35.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982959.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.694 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds