Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38741 * 119.65619 * 2 1 4 4 C 1.36741 * 120.41589 * 179.97438 * 3 2 1 5 5 C 1.39404 * 119.71628 * 0.02562 * 4 3 2 6 6 C 1.40490 * 120.13958 * 359.97438 * 5 4 3 7 7 C 1.37845 * 119.65564 * 179.97438 * 2 1 3 8 8 O 1.34813 * 107.28277 * 180.02562 * 6 5 4 9 9 C 1.34447 * 110.88620 * 359.77054 * 8 6 5 10 10 C 1.34000 * 110.15601 * 0.39112 * 9 8 6 11 11 C 1.50703 * 126.90733 * 179.89243 * 10 9 8 12 12 H 1.08997 * 109.47117 * 179.69022 * 11 10 9 13 13 C 1.52992 * 109.47279 * 59.68275 * 11 10 9 14 14 C 1.50704 * 109.46852 * 299.68254 * 11 10 9 15 15 H 1.08004 * 119.99829 * 5.62912 * 14 11 10 16 16 C 1.37875 * 120.00030 * 185.62115 * 14 11 10 17 17 N 1.31507 * 120.00338 * 197.57597 * 16 14 11 18 18 Si 1.86804 * 119.99762 * 17.57383 * 16 14 11 19 19 H 1.48497 * 109.46848 * 179.97438 * 18 16 14 20 20 H 1.48504 * 109.46843 * 60.00270 * 18 16 14 21 21 H 1.48498 * 109.47363 * 300.00164 * 18 16 14 22 22 H 1.08999 * 109.47195 * 90.00187 * 1 2 3 23 23 H 1.08998 * 109.47540 * 210.00001 * 1 2 3 24 24 H 1.09003 * 109.47289 * 330.00618 * 1 2 3 25 25 H 1.07994 * 119.79345 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.14482 * 180.02562 * 4 3 2 27 27 H 1.07997 * 120.09335 * 359.97438 * 7 2 1 28 28 H 1.08005 * 124.92219 * 180.26926 * 9 8 6 29 29 H 1.09008 * 109.47445 * 306.22623 * 13 11 10 30 30 H 1.09006 * 109.47399 * 66.22823 * 13 11 10 31 31 H 1.08998 * 109.47356 * 186.22746 * 13 11 10 32 32 H 0.97004 * 119.99922 * 354.83987 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2057 0.0000 4 6 3.5607 1.2238 0.0005 5 6 4.2678 0.0224 0.0005 6 6 3.5784 -1.2018 0.0005 7 6 2.1890 -1.1979 0.0005 8 8 4.5036 -2.1824 0.0011 9 6 5.7462 -1.6691 -0.0036 10 6 5.6926 -0.3301 0.0012 11 6 6.8605 0.6223 0.0006 12 1 6.4927 1.6483 -0.0002 13 6 7.7119 0.3846 -1.2481 14 6 7.6985 0.3902 1.2316 15 1 7.4668 -0.4292 1.8959 16 6 8.7610 1.2238 1.5095 17 7 9.6901 0.8440 2.3590 18 14 8.8806 2.8929 0.6791 19 1 10.1060 3.5906 1.1447 20 1 7.6869 3.7052 1.0264 21 1 8.9436 2.7100 -0.7932 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8901 0.5137 25 1 1.6445 2.1357 -0.0004 26 1 4.0907 2.1648 0.0009 27 1 1.6449 -2.1308 0.0014 28 1 6.6557 -2.2514 -0.0083 29 1 7.9880 -0.6684 -1.3047 30 1 7.1405 0.6585 -2.1350 31 1 8.6138 0.9943 -1.1944 32 1 9.5905 0.0112 2.8464 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259984454.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = 10.297386 kcal Electronic energy + Delta-G solvation = -15426.724960 eV Core-core repulsion = 12932.047966 eV Total energy + Delta-G solvation = -2494.676994 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88077 -37.88912 -35.13403 -32.58201 -31.45443 -30.16995 -29.05441 -26.12683 -24.75249 -22.87637 -22.00341 -21.02103 -18.75795 -17.47834 -16.73120 -16.18968 -15.53253 -15.03507 -13.97709 -13.94053 -13.56107 -13.50586 -13.28973 -12.70249 -12.27593 -12.12011 -11.97591 -11.63226 -11.46234 -11.22788 -10.93803 -10.53775 -10.36610 -9.84607 -9.68200 -9.35778 -8.88808 -8.25936 -8.17782 -7.49612 -6.45820 -4.09217 1.30465 1.70915 3.06083 3.33207 3.36837 3.41495 3.59162 4.04867 4.46593 4.95317 4.97333 5.11877 5.21866 5.27498 5.49299 5.56774 5.59712 5.79988 5.85891 6.03305 6.15451 6.20710 6.41841 6.56223 6.60789 6.71019 6.73038 6.79588 7.00395 7.12008 7.15932 7.45791 7.75282 8.08017 8.35571 8.87788 9.58734 10.91754 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.007402 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.385723 B = 3781.815501 C = 4175.748073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.074 4.074 3 C -0.146 4.146 4 C -0.060 4.060 5 C -0.128 4.128 6 C 0.049 3.951 7 C -0.115 4.115 8 O -0.203 6.203 9 C -0.023 4.023 10 C -0.112 4.112 11 C 0.075 3.925 12 H 0.029 0.971 13 C -0.144 4.144 14 C -0.594 4.594 15 H 0.057 0.943 16 C 0.031 3.969 17 N -0.905 5.905 18 Si 1.045 2.955 19 H -0.285 1.285 20 H -0.283 1.283 21 H -0.273 1.273 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.203 0.797 29 H 0.043 0.957 30 H 0.024 0.976 31 H 0.057 0.943 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.282 -0.912 -6.402 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.074 4.074 3 C -0.164 4.164 4 C -0.078 4.078 5 C -0.129 4.129 6 C 0.002 3.998 7 C -0.134 4.134 8 O -0.105 6.105 9 C -0.086 4.086 10 C -0.113 4.113 11 C 0.056 3.944 12 H 0.047 0.953 13 C -0.201 4.201 14 C -0.632 4.632 15 H 0.075 0.925 16 C -0.174 4.174 17 N -0.539 5.539 18 Si 0.873 3.127 19 H -0.211 1.211 20 H -0.210 1.210 21 H -0.199 1.199 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.141 0.859 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.220 0.780 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.361 0.141 -6.539 14.877 hybrid contribution -0.777 -1.328 0.328 1.573 sum -14.138 -1.187 -6.211 15.488 Atomic orbital electron populations 1.20724 0.90839 1.02653 1.02142 1.19510 0.95694 0.92037 1.00164 1.20543 0.93769 0.97315 1.04800 1.20331 0.93502 0.96890 0.97084 1.20102 0.93778 0.93753 1.05275 1.19616 0.90959 0.86525 1.02746 1.19609 0.88435 0.98374 1.06961 1.83942 1.14805 1.34761 1.77030 1.23623 0.84517 0.94243 1.06203 1.21586 0.92641 0.94639 1.02471 1.17610 0.88777 0.92507 0.95496 0.95332 1.22236 1.00041 1.01054 0.96777 1.21969 1.15711 1.16809 1.08699 0.92504 1.25763 0.91426 1.02782 0.97382 1.70863 1.30604 1.25356 1.27073 0.84048 0.76352 0.75866 0.76440 1.21131 1.20966 1.19925 0.91294 0.91679 0.91468 0.85920 0.85633 0.85788 0.78010 0.93774 0.95709 0.92393 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.99 36.00 0.36 -0.67 16 2 C -0.07 -1.02 5.88 -104.58 -0.61 -1.63 16 3 C -0.15 -2.13 9.62 -39.94 -0.38 -2.51 16 4 C -0.06 -1.06 10.05 -39.69 -0.40 -1.46 16 5 C -0.13 -2.60 6.38 -105.16 -0.67 -3.27 16 6 C 0.05 0.94 7.42 -38.47 -0.29 0.65 16 7 C -0.12 -1.78 9.70 -39.46 -0.38 -2.17 16 8 O -0.20 -3.99 10.58 3.90 0.04 -3.95 16 9 C -0.02 -0.46 11.27 29.24 0.33 -0.13 16 10 C -0.11 -2.48 5.02 -102.66 -0.52 -2.99 16 11 C 0.08 1.80 2.29 -92.92 -0.21 1.59 16 12 H 0.03 0.69 6.80 -51.93 -0.35 0.33 16 13 C -0.14 -3.13 8.81 37.15 0.33 -2.80 16 14 C -0.59 -16.51 8.69 -34.44 -0.30 -16.81 16 15 H 0.06 1.71 7.93 -52.48 -0.42 1.29 16 16 C 0.03 0.90 5.29 -17.82 -0.09 0.80 16 17 N -0.91 -27.50 13.69 55.43 0.76 -26.74 16 18 Si 1.04 24.87 26.29 -169.99 -4.47 20.40 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -5.97 5.76 56.52 0.33 -5.64 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 24 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 25 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 27 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.20 3.70 8.06 -52.48 -0.42 3.28 16 29 H 0.04 0.91 7.86 -51.92 -0.41 0.51 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.30 4.89 -51.93 -0.25 1.05 16 32 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -30.73 271.84 -6.45 -37.18 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.03 Total: 0.41 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -2.84 Total: -31.40 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.76 Total: -26.74 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: 0.04 Total: -3.95 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -4.47 Total: 20.40 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.73 -6.45 -37.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259984454.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.481 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds