Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38741 * 119.65619 * 2 1 4 4 C 1.36741 * 120.41589 * 179.97438 * 3 2 1 5 5 C 1.39404 * 119.71628 * 0.02562 * 4 3 2 6 6 C 1.40490 * 120.13958 * 359.97438 * 5 4 3 7 7 C 1.37845 * 119.65564 * 179.97438 * 2 1 3 8 8 O 1.34813 * 107.28277 * 180.02562 * 6 5 4 9 9 C 1.34447 * 110.88620 * 359.77054 * 8 6 5 10 10 C 1.34000 * 110.15601 * 0.39112 * 9 8 6 11 11 C 1.50703 * 126.90733 * 179.89243 * 10 9 8 12 12 H 1.08997 * 109.47117 * 179.69022 * 11 10 9 13 13 C 1.52992 * 109.47279 * 59.68275 * 11 10 9 14 14 C 1.50704 * 109.46852 * 299.68254 * 11 10 9 15 15 H 1.08004 * 119.99829 * 5.62912 * 14 11 10 16 16 C 1.37875 * 120.00030 * 185.62115 * 14 11 10 17 17 N 1.31507 * 120.00338 * 197.57597 * 16 14 11 18 18 Si 1.86804 * 119.99762 * 17.57383 * 16 14 11 19 19 H 1.48497 * 109.46848 * 179.97438 * 18 16 14 20 20 H 1.48504 * 109.46843 * 60.00270 * 18 16 14 21 21 H 1.48498 * 109.47363 * 300.00164 * 18 16 14 22 22 H 1.08999 * 109.47195 * 90.00187 * 1 2 3 23 23 H 1.08998 * 109.47540 * 210.00001 * 1 2 3 24 24 H 1.09003 * 109.47289 * 330.00618 * 1 2 3 25 25 H 1.07994 * 119.79345 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.14482 * 180.02562 * 4 3 2 27 27 H 1.07997 * 120.09335 * 359.97438 * 7 2 1 28 28 H 1.08005 * 124.92219 * 180.26926 * 9 8 6 29 29 H 1.09008 * 109.47445 * 306.22623 * 13 11 10 30 30 H 1.09006 * 109.47399 * 66.22823 * 13 11 10 31 31 H 1.08998 * 109.47356 * 186.22746 * 13 11 10 32 32 H 0.97004 * 119.99922 * 354.83987 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2057 0.0000 4 6 3.5607 1.2238 0.0005 5 6 4.2678 0.0224 0.0005 6 6 3.5784 -1.2018 0.0005 7 6 2.1890 -1.1979 0.0005 8 8 4.5036 -2.1824 0.0011 9 6 5.7462 -1.6691 -0.0036 10 6 5.6926 -0.3301 0.0012 11 6 6.8605 0.6223 0.0006 12 1 6.4927 1.6483 -0.0002 13 6 7.7119 0.3846 -1.2481 14 6 7.6985 0.3902 1.2316 15 1 7.4668 -0.4292 1.8959 16 6 8.7610 1.2238 1.5095 17 7 9.6901 0.8440 2.3590 18 14 8.8806 2.8929 0.6791 19 1 10.1060 3.5906 1.1447 20 1 7.6869 3.7052 1.0264 21 1 8.9436 2.7100 -0.7932 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8901 0.5137 25 1 1.6445 2.1357 -0.0004 26 1 4.0907 2.1648 0.0009 27 1 1.6449 -2.1308 0.0014 28 1 6.6557 -2.2514 -0.0083 29 1 7.9880 -0.6684 -1.3047 30 1 7.1405 0.6585 -2.1350 31 1 8.6138 0.9943 -1.1944 32 1 9.5905 0.0112 2.8464 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259984454.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = -7.471445 kcal Electronic energy + Delta-G solvation = -15427.495474 eV Core-core repulsion = 12932.047966 eV Total energy + Delta-G solvation = -2495.447508 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.32969 -39.11906 -36.97531 -34.30773 -33.01878 -31.43997 -30.59668 -27.25956 -26.77975 -24.23782 -23.75433 -22.28319 -20.45112 -19.45912 -18.20117 -17.61490 -17.02531 -16.37797 -15.74587 -15.23349 -15.12744 -14.82513 -14.49333 -14.38842 -14.10357 -13.49084 -13.16182 -12.92203 -12.87013 -12.59131 -12.54171 -12.32640 -11.82114 -11.68633 -11.50953 -11.12858 -10.63664 -10.38936 -9.51687 -9.00932 -8.65752 -6.37076 0.00092 0.41953 1.45852 1.51518 1.53957 1.72583 1.91611 2.48174 2.75088 3.05694 3.62729 3.73505 4.00207 4.12224 4.26271 4.40534 4.46492 4.58755 4.66762 4.79389 4.86786 4.90061 4.91477 5.02082 5.23417 5.24905 5.31422 5.44781 5.51103 5.56542 5.70132 5.82921 5.98814 6.04169 6.30402 6.55934 7.39752 8.63220 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.007402 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.385723 B = 3781.815501 C = 4175.748073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.083 4.083 5 C -0.161 4.161 6 C 0.027 3.973 7 C -0.121 4.121 8 O -0.208 6.208 9 C -0.025 4.025 10 C -0.145 4.145 11 C 0.077 3.923 12 H 0.030 0.970 13 C -0.139 4.139 14 C -0.593 4.593 15 H 0.016 0.984 16 C -0.018 4.018 17 N -0.937 5.937 18 Si 1.081 2.919 19 H -0.289 1.289 20 H -0.266 1.266 21 H -0.239 1.239 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.160 0.840 26 H 0.127 0.873 27 H 0.150 0.850 28 H 0.211 0.789 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.306 0.299 -7.955 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.061 4.061 3 C -0.152 4.152 4 C -0.101 4.101 5 C -0.162 4.162 6 C -0.020 4.020 7 C -0.139 4.139 8 O -0.110 6.110 9 C -0.088 4.088 10 C -0.146 4.146 11 C 0.058 3.942 12 H 0.048 0.952 13 C -0.196 4.196 14 C -0.631 4.631 15 H 0.034 0.966 16 C -0.216 4.216 17 N -0.573 5.573 18 Si 0.902 3.098 19 H -0.215 1.215 20 H -0.191 1.191 21 H -0.163 1.163 22 H 0.106 0.894 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.177 0.823 26 H 0.145 0.855 27 H 0.168 0.832 28 H 0.227 0.773 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.415 1.330 -8.104 18.355 hybrid contribution -0.028 -1.765 0.860 1.964 sum -16.443 -0.435 -7.244 17.973 Atomic orbital electron populations 1.20846 0.87182 1.04311 1.03823 1.20105 0.98127 0.90939 0.96962 1.21010 0.92646 0.99340 1.02214 1.20566 0.95024 0.96090 0.98417 1.20287 0.93007 0.95474 1.07443 1.20150 0.92143 0.85842 1.03879 1.20098 0.87009 1.00477 1.06359 1.83910 1.14662 1.35152 1.77321 1.23751 0.85270 0.94119 1.05705 1.21566 0.93436 0.95042 1.04605 1.17487 0.89255 0.93121 0.94365 0.95208 1.22124 0.99597 1.01150 0.96739 1.22127 1.16250 1.15140 1.09552 0.96597 1.27198 0.91026 1.06010 0.97368 1.70997 1.32266 1.25093 1.28961 0.83623 0.76784 0.71688 0.77690 1.21509 1.19142 1.16293 0.89369 0.90319 0.89653 0.82279 0.85497 0.83184 0.77297 0.93649 0.93055 0.93039 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.99 71.23 0.71 -0.75 16 2 C -0.06 -1.44 5.88 -19.84 -0.12 -1.56 16 3 C -0.13 -3.44 9.62 22.04 0.21 -3.23 16 4 C -0.08 -2.81 10.05 22.20 0.22 -2.59 16 5 C -0.16 -6.53 6.38 -20.21 -0.13 -6.66 16 6 C 0.03 1.01 7.42 22.99 0.17 1.18 16 7 C -0.12 -3.44 9.70 22.35 0.22 -3.23 16 8 O -0.21 -8.28 10.58 -8.95 -0.09 -8.37 16 9 C -0.02 -1.05 11.27 66.85 0.75 -0.29 16 10 C -0.15 -6.54 5.02 -18.59 -0.09 -6.63 16 11 C 0.08 3.70 2.29 -12.29 -0.03 3.67 16 12 H 0.03 1.42 6.80 -2.39 -0.02 1.40 16 13 C -0.14 -5.93 8.81 71.98 0.63 -5.29 16 14 C -0.59 -34.10 8.69 25.60 0.22 -33.88 16 15 H 0.02 1.01 7.93 -2.91 -0.02 0.98 16 16 C -0.02 -1.06 5.29 84.66 0.45 -0.61 16 17 N -0.94 -59.02 13.69 21.45 0.29 -58.73 16 18 Si 1.08 49.65 26.29 68.60 1.80 51.46 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.24 -9.62 5.76 99.48 0.57 -9.05 16 22 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 24 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 25 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 26 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 27 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.21 8.05 8.06 -2.91 -0.02 8.03 16 29 H 0.04 1.88 7.86 -2.38 -0.02 1.86 16 30 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.05 2.23 4.89 -2.39 -0.01 2.22 16 32 H 0.25 16.09 8.73 -92.71 -0.81 15.29 16 Total: -1.00 -69.35 271.84 6.17 -63.19 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.94 Total: 12.33 kcal Atomic # 6 Polarization: -63.10 SS G_CDS: 3.23 Total: -59.88 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.29 Total: -58.73 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.09 Total: -8.37 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 1.80 Total: 51.46 kcal Total: -69.35 6.17 -63.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259984454.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.717 kcal (2) G-P(sol) polarization free energy of solvation -69.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds