Wall clock time and date at job start Mon Mar 30 2020 03:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37762 * 120.19712 * 2 1 4 4 C 1.38720 * 120.27469 * 180.29716 * 3 2 1 5 5 C 1.37862 * 120.68772 * 359.41082 * 4 3 2 6 6 C 1.38880 * 119.96034 * 0.62074 * 5 4 3 7 7 O 1.34840 * 133.42524 * 179.70572 * 6 5 4 8 8 C 1.34437 * 110.89732 * 179.97438 * 7 6 5 9 9 C 1.33998 * 110.16401 * 359.97438 * 8 7 6 10 10 C 1.50695 * 126.90810 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47102 * 186.08811 * 10 9 8 12 12 C 1.53004 * 109.47004 * 306.08646 * 10 9 8 13 13 C 1.50704 * 109.47541 * 66.08572 * 10 9 8 14 14 H 1.07996 * 119.99800 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00179 * 179.97438 * 13 10 9 16 16 N 1.31521 * 119.99908 * 0.02562 * 15 13 10 17 17 Si 1.86792 * 119.99867 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47468 * 60.00339 * 17 15 13 19 19 H 1.48505 * 109.47155 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47033 * 299.99835 * 17 15 13 21 21 C 1.39381 * 120.20032 * 180.02562 * 2 1 3 22 22 H 1.08991 * 109.47197 * 96.11031 * 1 2 3 23 23 H 1.09009 * 109.46932 * 216.10629 * 1 2 3 24 24 H 1.08998 * 109.47099 * 336.10419 * 1 2 3 25 25 H 1.07994 * 119.86017 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.65343 * 179.72290 * 4 3 2 27 27 H 1.08001 * 120.01897 * 180.25870 * 5 4 3 28 28 H 1.08005 * 124.92004 * 179.97438 * 8 7 6 29 29 H 1.09001 * 109.47057 * 60.00137 * 12 10 9 30 30 H 1.09003 * 109.46989 * 180.02562 * 12 10 9 31 31 H 1.09002 * 109.47156 * 299.99946 * 12 10 9 32 32 H 0.96999 * 119.99480 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1907 0.0000 4 6 3.5871 1.1926 -0.0062 5 6 4.2924 0.0080 -0.0003 6 6 3.6133 -1.2035 -0.0010 7 8 4.0144 -2.4908 -0.0013 8 6 2.9579 -3.3222 -0.0015 9 6 1.8170 -2.6194 -0.0006 10 6 0.4145 -3.1706 0.0000 11 1 -0.2975 -2.3524 -0.1084 12 6 0.2500 -4.1477 -1.1658 13 6 0.1583 -3.8907 1.2989 14 1 0.9335 -3.9435 2.0490 15 6 -1.0660 -4.4812 1.5299 16 7 -2.0101 -4.4165 0.6166 17 14 -1.3837 -5.3731 3.1401 18 1 -1.2238 -4.4246 4.2714 19 1 -2.7658 -5.9164 3.1407 20 1 -0.4140 -6.4881 3.2881 21 6 2.2082 -1.2046 -0.0005 22 1 -0.3633 -0.1094 -1.0217 23 1 -0.3633 -0.8304 0.6056 24 1 -0.3633 0.9396 0.4163 25 1 1.6609 2.1265 0.0004 26 1 4.1202 2.1319 -0.0107 27 1 5.3723 0.0221 -0.0010 28 1 3.0197 -4.4005 -0.0021 29 1 0.9620 -4.9659 -1.0574 30 1 -0.7646 -4.5461 -1.1656 31 1 0.4352 -3.6269 -2.1053 32 1 -2.8713 -4.8322 0.7791 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259991158.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:22 Heat of formation + Delta-G solvation = 12.844827 kcal Electronic energy + Delta-G solvation = -15719.248697 eV Core-core repulsion = 13224.682168 eV Total energy + Delta-G solvation = -2494.566529 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.76618 -37.57848 -35.03851 -32.50325 -31.35145 -29.67654 -28.37066 -26.06454 -25.15199 -22.64930 -21.89867 -21.22488 -18.57672 -16.79653 -16.44151 -15.72031 -15.34998 -15.16003 -14.49899 -13.72073 -13.25266 -13.03178 -12.81999 -12.65536 -12.05745 -11.73950 -11.59295 -11.27496 -11.17826 -10.93174 -10.88207 -10.65268 -10.35395 -9.92160 -9.64100 -9.29286 -8.72798 -8.37324 -8.10688 -7.29255 -6.04050 -4.10807 1.42858 1.81719 3.19451 3.29672 3.34194 3.38608 3.46626 4.15725 4.41451 5.07633 5.18181 5.25093 5.28362 5.56854 5.66067 5.81347 6.01617 6.07235 6.18710 6.26617 6.46408 6.60388 6.69509 6.73543 6.85244 6.93513 7.04270 7.17708 7.20948 7.36286 7.64986 7.81375 7.97962 8.06667 8.36685 8.91407 9.53914 11.01242 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.031684 B = 0.008141 C = 0.007556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.521455 B = 3438.464573 C = 3704.966625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.022 4.022 3 C -0.157 4.157 4 C -0.099 4.099 5 C -0.126 4.126 6 C 0.049 3.951 7 O -0.206 6.206 8 C -0.033 4.033 9 C -0.113 4.113 10 C 0.093 3.907 11 H 0.049 0.951 12 C -0.133 4.133 13 C -0.509 4.509 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.125 4.125 22 H 0.070 0.930 23 H 0.094 0.906 24 H 0.059 0.941 25 H 0.122 0.878 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.202 0.798 29 H 0.026 0.974 30 H 0.087 0.913 31 H 0.009 0.991 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.075 7.536 -2.080 10.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.023 4.023 3 C -0.175 4.175 4 C -0.117 4.117 5 C -0.144 4.144 6 C 0.001 3.999 7 O -0.108 6.108 8 C -0.096 4.096 9 C -0.114 4.114 10 C 0.075 3.925 11 H 0.067 0.933 12 C -0.191 4.191 13 C -0.547 4.547 14 H 0.073 0.927 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.126 4.126 22 H 0.089 0.911 23 H 0.112 0.888 24 H 0.078 0.922 25 H 0.140 0.860 26 H 0.144 0.856 27 H 0.140 0.860 28 H 0.219 0.781 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.028 0.972 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.145 7.388 -2.113 10.493 hybrid contribution -0.254 -0.593 0.923 1.126 sum 6.891 6.795 -1.190 9.751 Atomic orbital electron populations 1.21004 0.90704 1.03334 1.03019 1.19439 0.96247 0.90817 0.95748 1.20805 0.93961 0.97067 1.05666 1.20718 0.94032 0.96496 1.00503 1.19719 0.99322 0.88076 1.07296 1.19654 0.93056 0.84482 1.02702 1.83932 1.35733 1.13940 1.77196 1.23620 0.83485 0.95350 1.07134 1.21997 0.98755 0.89207 1.01429 1.17530 0.85066 0.94984 0.94946 0.93300 1.21818 1.03610 0.98440 0.95248 1.21097 0.98623 1.34218 1.00768 0.92676 1.24936 0.96026 0.96195 0.96664 1.69870 1.04573 1.44825 1.33565 0.86650 0.77228 0.80066 0.84050 1.20276 1.21243 1.20265 1.19978 0.92694 0.94350 1.05596 0.91119 0.88790 0.92231 0.86042 0.85631 0.85992 0.78146 0.95498 0.89473 0.97219 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 9.05 36.01 0.33 -1.85 16 2 C -0.02 -0.41 5.90 -104.37 -0.62 -1.03 16 3 C -0.16 -2.40 9.67 -39.58 -0.38 -2.79 16 4 C -0.10 -1.41 10.01 -39.54 -0.40 -1.80 16 5 C -0.13 -1.99 10.06 -39.48 -0.40 -2.39 16 6 C 0.05 0.95 7.41 -38.49 -0.29 0.66 16 7 O -0.21 -4.08 10.58 3.85 0.04 -4.04 16 8 C -0.03 -0.67 11.37 29.24 0.33 -0.34 16 9 C -0.11 -2.52 5.02 -102.66 -0.52 -3.04 16 10 C 0.09 2.28 2.45 -92.92 -0.23 2.06 16 11 H 0.05 1.26 5.00 -51.93 -0.26 1.00 16 12 C -0.13 -3.16 8.80 37.16 0.33 -2.83 16 13 C -0.51 -13.64 8.49 -34.44 -0.29 -13.93 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -24.57 11.32 55.43 0.63 -23.94 16 17 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.13 -2.61 6.16 -105.16 -0.65 -3.26 16 22 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.09 1.93 5.93 -51.92 -0.31 1.63 16 24 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 25 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.20 3.62 7.99 -52.48 -0.42 3.20 16 29 H 0.03 0.59 7.88 -51.93 -0.41 0.18 16 30 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 269.90 15.07 4.07 4.07 Total: -1.00 -28.64 269.90 -6.94 -35.58 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -3.78 Total: 1.32 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -2.87 Total: -28.93 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.63 Total: -23.94 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: 0.04 Total: -4.04 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.64 -6.94 -35.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259991158.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.426 kcal (2) G-P(sol) polarization free energy of solvation -28.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds