Wall clock time and date at job start Mon Mar 30 2020 03:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37762 * 120.19712 * 2 1 4 4 C 1.38720 * 120.27469 * 180.29716 * 3 2 1 5 5 C 1.37862 * 120.68772 * 359.41082 * 4 3 2 6 6 C 1.38880 * 119.96034 * 0.62074 * 5 4 3 7 7 O 1.34840 * 133.42524 * 179.70572 * 6 5 4 8 8 C 1.34437 * 110.89732 * 179.97438 * 7 6 5 9 9 C 1.33998 * 110.16401 * 359.97438 * 8 7 6 10 10 C 1.50695 * 126.90810 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47102 * 186.08811 * 10 9 8 12 12 C 1.53004 * 109.47004 * 306.08646 * 10 9 8 13 13 C 1.50704 * 109.47541 * 66.08572 * 10 9 8 14 14 H 1.07996 * 119.99800 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00179 * 179.97438 * 13 10 9 16 16 N 1.31521 * 119.99908 * 0.02562 * 15 13 10 17 17 Si 1.86792 * 119.99867 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47468 * 60.00339 * 17 15 13 19 19 H 1.48505 * 109.47155 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47033 * 299.99835 * 17 15 13 21 21 C 1.39381 * 120.20032 * 180.02562 * 2 1 3 22 22 H 1.08991 * 109.47197 * 96.11031 * 1 2 3 23 23 H 1.09009 * 109.46932 * 216.10629 * 1 2 3 24 24 H 1.08998 * 109.47099 * 336.10419 * 1 2 3 25 25 H 1.07994 * 119.86017 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.65343 * 179.72290 * 4 3 2 27 27 H 1.08001 * 120.01897 * 180.25870 * 5 4 3 28 28 H 1.08005 * 124.92004 * 179.97438 * 8 7 6 29 29 H 1.09001 * 109.47057 * 60.00137 * 12 10 9 30 30 H 1.09003 * 109.46989 * 180.02562 * 12 10 9 31 31 H 1.09002 * 109.47156 * 299.99946 * 12 10 9 32 32 H 0.96999 * 119.99480 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1907 0.0000 4 6 3.5871 1.1926 -0.0062 5 6 4.2924 0.0080 -0.0003 6 6 3.6133 -1.2035 -0.0010 7 8 4.0144 -2.4908 -0.0013 8 6 2.9579 -3.3222 -0.0015 9 6 1.8170 -2.6194 -0.0006 10 6 0.4145 -3.1706 0.0000 11 1 -0.2975 -2.3524 -0.1084 12 6 0.2500 -4.1477 -1.1658 13 6 0.1583 -3.8907 1.2989 14 1 0.9335 -3.9435 2.0490 15 6 -1.0660 -4.4812 1.5299 16 7 -2.0101 -4.4165 0.6166 17 14 -1.3837 -5.3731 3.1401 18 1 -1.2238 -4.4246 4.2714 19 1 -2.7658 -5.9164 3.1407 20 1 -0.4140 -6.4881 3.2881 21 6 2.2082 -1.2046 -0.0005 22 1 -0.3633 -0.1094 -1.0217 23 1 -0.3633 -0.8304 0.6056 24 1 -0.3633 0.9396 0.4163 25 1 1.6609 2.1265 0.0004 26 1 4.1202 2.1319 -0.0107 27 1 5.3723 0.0221 -0.0010 28 1 3.0197 -4.4005 -0.0021 29 1 0.9620 -4.9659 -1.0574 30 1 -0.7646 -4.5461 -1.1656 31 1 0.4352 -3.6269 -2.1053 32 1 -2.8713 -4.8322 0.7791 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259991158.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:22 Heat of formation + Delta-G solvation = -1.847014 kcal Electronic energy + Delta-G solvation = -15719.885783 eV Core-core repulsion = 13224.682168 eV Total energy + Delta-G solvation = -2495.203615 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.22800 -38.88947 -36.86563 -34.15658 -32.93895 -31.22506 -29.91076 -27.45816 -27.19662 -24.28880 -23.28564 -22.75276 -20.16327 -18.48207 -18.01847 -17.37425 -16.88845 -16.58938 -16.20622 -15.15120 -14.70848 -14.67094 -14.41895 -14.23051 -13.64718 -13.38269 -13.07501 -12.90270 -12.82963 -12.61788 -12.55983 -12.29761 -12.05866 -11.72700 -11.44886 -11.07584 -10.43621 -10.39550 -9.44486 -8.77829 -8.09221 -6.23079 0.09293 0.49641 1.41116 1.41785 1.49240 1.66681 2.03779 2.43639 2.83406 3.17495 3.71312 3.85000 4.08923 4.29922 4.35285 4.51816 4.60041 4.75093 4.77738 4.81957 4.87954 4.99001 5.17033 5.19597 5.28594 5.39896 5.48042 5.58245 5.66252 5.72393 5.84674 6.01689 6.07756 6.31543 6.43171 6.83846 7.44225 8.94344 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.031684 B = 0.008141 C = 0.007556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.521455 B = 3438.464573 C = 3704.966625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.084 4.084 5 C -0.125 4.125 6 C 0.025 3.975 7 O -0.208 6.208 8 C -0.029 4.029 9 C -0.147 4.147 10 C 0.095 3.905 11 H 0.030 0.970 12 C -0.124 4.124 13 C -0.523 4.523 14 H 0.044 0.956 15 C 0.020 3.980 16 N -0.913 5.913 17 Si 0.950 3.050 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.271 1.271 21 C -0.159 4.159 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.157 0.843 26 H 0.176 0.824 27 H 0.153 0.847 28 H 0.216 0.784 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 9.469 -1.701 12.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.162 4.162 4 C -0.102 4.102 5 C -0.143 4.143 6 C -0.022 4.022 7 O -0.111 6.111 8 C -0.092 4.092 9 C -0.148 4.148 10 C 0.077 3.923 11 H 0.048 0.952 12 C -0.182 4.182 13 C -0.561 4.561 14 H 0.062 0.938 15 C -0.179 4.179 16 N -0.552 5.552 17 Si 0.776 3.224 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.196 1.196 21 C -0.160 4.160 22 H 0.087 0.913 23 H 0.072 0.928 24 H 0.108 0.892 25 H 0.175 0.825 26 H 0.193 0.807 27 H 0.171 0.829 28 H 0.233 0.767 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.654 9.326 -1.737 12.841 hybrid contribution -0.671 -1.051 0.782 1.472 sum 7.983 8.275 -0.955 11.537 Atomic orbital electron populations 1.20881 0.90923 1.03139 1.02312 1.19707 0.96518 0.91458 0.97607 1.21271 0.94901 0.97045 1.02992 1.21326 0.93644 0.97782 0.97405 1.20269 1.01092 0.87064 1.05909 1.20208 0.92947 0.85081 1.03979 1.83909 1.35274 1.14471 1.77426 1.23824 0.83308 0.96041 1.06058 1.21879 0.97966 0.91040 1.03943 1.17342 0.86465 0.94271 0.94213 0.95206 1.21674 1.02198 0.98565 0.95725 1.21323 0.98583 1.34598 1.01600 0.93751 1.25623 0.95824 0.96908 0.99571 1.69986 1.04801 1.45441 1.35015 0.85733 0.77302 0.78995 0.80369 1.20206 1.20618 1.19644 1.20215 0.93967 0.94326 1.07495 0.91338 0.92846 0.89213 0.82546 0.80707 0.82919 0.76724 0.94842 0.91820 0.96088 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 9.05 71.24 0.65 -3.47 16 2 C -0.05 -1.91 5.90 -19.70 -0.12 -2.02 16 3 C -0.14 -3.89 9.67 22.27 0.22 -3.68 16 4 C -0.08 -1.96 10.01 22.30 0.22 -1.74 16 5 C -0.13 -3.53 10.06 22.33 0.22 -3.31 16 6 C 0.02 0.94 7.41 22.98 0.17 1.11 16 7 O -0.21 -8.22 10.58 -9.13 -0.10 -8.32 16 8 C -0.03 -1.21 11.37 66.85 0.76 -0.45 16 9 C -0.15 -6.78 5.02 -18.60 -0.09 -6.88 16 10 C 0.10 4.89 2.45 -12.29 -0.03 4.86 16 11 H 0.03 1.63 5.00 -2.39 -0.01 1.62 16 12 C -0.12 -6.07 8.80 71.98 0.63 -5.44 16 13 C -0.52 -28.96 8.49 25.60 0.22 -28.75 16 14 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 15 C 0.02 1.09 5.30 84.65 0.45 1.53 16 16 N -0.91 -51.80 11.32 21.45 0.24 -51.56 16 17 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 C -0.16 -6.68 6.16 -20.21 -0.12 -6.81 16 22 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.05 2.32 5.93 -2.38 -0.01 2.30 16 24 H 0.09 2.51 8.05 -2.39 -0.02 2.49 16 25 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 26 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 27 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 28 H 0.22 7.88 7.99 -2.91 -0.02 7.86 16 29 H 0.03 1.53 7.88 -2.39 -0.02 1.51 16 30 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -63.79 269.90 6.46 -57.32 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.12 Total: 11.99 kcal Atomic # 6 Polarization: -58.20 SS G_CDS: 3.17 Total: -55.03 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.24 Total: -51.56 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.10 Total: -8.32 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -63.79 6.46 -57.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259991158.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.476 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds