Wall clock time and date at job start Mon Mar 30 2020 03:23:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86799 * 120.00239 * 2 1
4 4 H 1.48497 * 109.47358 * 264.89536 * 3 2 1
5 5 H 1.48507 * 109.47100 * 24.89542 * 3 2 1
6 6 H 1.48500 * 109.47136 * 144.89216 * 3 2 1
7 7 C 1.37876 * 119.99986 * 179.97438 * 2 1 3
8 8 H 1.08009 * 120.00075 * 6.43767 * 7 2 1
9 9 C 1.50696 * 120.00495 * 186.16341 * 7 2 1
10 10 C 1.50706 * 115.55125 * 91.05115 * 9 7 2
11 11 C 1.38394 * 120.01220 * 243.21696 * 10 9 7
12 12 C 1.38247 * 119.76648 * 179.97438 * 11 10 9
13 13 C 1.37976 * 120.35031 * 0.18210 * 12 11 10
14 14 C 1.39240 * 120.23581 * 359.97438 * 13 12 11
15 15 C 1.37692 * 120.00890 * 62.94011 * 10 9 7
16 16 C 1.51645 * 132.17396 * 359.14014 * 15 10 9
17 17 C 1.54709 * 101.94601 * 195.60902 * 16 15 10
18 18 O 1.36140 * 129.90134 * 179.07393 * 14 13 12
19 19 C 1.53003 * 117.49733 * 305.35102 * 9 7 2
20 20 C 1.53001 * 59.99982 * 252.50901 * 19 9 7
21 21 H 0.96999 * 119.99701 * 0.02562 * 1 2 3
22 22 H 1.07994 * 120.11465 * 359.94466 * 11 10 9
23 23 H 1.07996 * 119.82325 * 180.20647 * 12 11 10
24 24 H 1.07997 * 119.87730 * 180.02562 * 13 12 11
25 25 H 1.08999 * 110.94094 * 313.77112 * 16 15 10
26 26 H 1.08999 * 110.93801 * 77.44529 * 16 15 10
27 27 H 1.09006 * 110.74902 * 93.08640 * 17 16 15
28 28 H 1.08996 * 110.75023 * 216.25865 * 17 16 15
29 29 H 1.09000 * 117.49619 * 359.97438 * 19 9 7
30 30 H 1.08993 * 117.50036 * 145.01851 * 19 9 7
31 31 H 1.09008 * 117.49469 * 252.51131 * 20 19 9
32 32 H 1.08994 * 117.50092 * 107.48901 * 20 19 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.6046 1.9841 -1.3945
5 1 1.3969 2.6814 0.5894
6 1 3.4886 1.4736 0.8052
7 6 2.0045 -1.1940 0.0005
8 1 1.4696 -2.1265 -0.1039
9 6 3.5049 -1.1979 0.1406
10 6 4.0258 -1.2968 1.5514
11 6 4.7673 -0.2598 2.0898
12 6 5.2422 -0.3557 3.3846
13 6 4.9838 -1.4807 4.1404
14 6 4.2413 -2.5298 3.6049
15 6 3.7592 -2.4166 2.3069
16 6 2.9737 -3.6800 2.0128
17 6 2.7731 -4.2694 3.4290
18 8 3.8879 -3.7219 4.1595
19 6 4.3093 -0.3566 -0.8524
20 6 4.3156 -1.8827 -0.9615
21 1 -0.4849 0.8401 -0.0004
22 1 4.9747 0.6210 1.5004
23 1 5.8181 0.4545 3.8068
24 1 5.3581 -1.5473 5.1513
25 1 2.0156 -3.4441 1.5498
26 1 3.5505 -4.3601 1.3860
27 1 1.8250 -3.9394 3.8539
28 1 2.8259 -5.3578 3.4054
29 1 3.7532 0.1992 -1.6073
30 1 5.2154 0.1255 -0.4856
31 1 5.2260 -2.4046 -0.6662
32 1 3.7637 -2.3306 -1.7878
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260010710.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:46
Heat of formation + Delta-G solvation = 20.453058 kcal
Electronic energy + Delta-G solvation = -16076.371058 eV
Core-core repulsion = 13582.134447 eV
Total energy + Delta-G solvation = -2494.236611 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.105 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.53590 -37.81488 -35.69735 -32.15127 -31.92564 -29.25844 -28.59837 -25.84730
-23.15207 -22.41384 -21.52743 -20.84238 -19.05702 -16.96199 -16.38153 -15.87714
-15.42558 -15.07801 -14.84867 -13.96860 -13.17815 -12.87481 -12.74138 -12.64991
-12.35004 -12.07805 -11.36625 -11.21535 -11.11125 -10.95596 -10.80422 -10.38572
-10.27522 -9.96684 -9.60674 -9.35471 -8.71996 -8.49651 -7.85348 -7.53473
-6.17483 -4.20702 1.92978 2.02469 3.28041 3.38853 3.42233 3.74442
4.32293 4.40441 4.85010 5.05556 5.12699 5.23879 5.42929 5.46551
5.58584 5.77846 5.87127 5.92835 5.96520 6.07360 6.16329 6.25360
6.42858 6.54681 6.59687 6.66757 6.77840 6.93287 7.03504 7.07904
7.26173 7.38779 7.66375 7.77591 8.41156 8.82715 9.45615 10.93188
Molecular weight = 230.10amu
Principal moments of inertia in cm(-1)
A = 0.026000 B = 0.011218 C = 0.010181
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1076.679908 B = 2495.349662 C = 2749.523487
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.080 3.920
3 Si 0.876 3.124
4 H -0.279 1.279
5 H -0.299 1.299
6 H -0.245 1.245
7 C -0.483 4.483
8 H 0.080 0.920
9 C 0.033 3.967
10 C 0.032 3.968
11 C -0.156 4.156
12 C -0.095 4.095
13 C -0.161 4.161
14 C 0.091 3.909
15 C -0.146 4.146
16 C -0.105 4.105
17 C 0.050 3.950
18 O -0.315 6.315
19 C -0.203 4.203
20 C -0.173 4.173
21 H 0.266 0.734
22 H 0.125 0.875
23 H 0.121 0.879
24 H 0.116 0.884
25 H 0.106 0.894
26 H 0.080 0.920
27 H 0.074 0.926
28 H 0.098 0.902
29 H 0.090 0.910
30 H 0.077 0.923
31 H 0.072 0.928
32 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.172 -3.490 4.439 9.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.123 4.123
3 Si 0.705 3.295
4 H -0.206 1.206
5 H -0.226 1.226
6 H -0.170 1.170
7 C -0.520 4.520
8 H 0.098 0.902
9 C 0.032 3.968
10 C 0.031 3.969
11 C -0.174 4.174
12 C -0.113 4.113
13 C -0.179 4.179
14 C 0.046 3.954
15 C -0.147 4.147
16 C -0.142 4.142
17 C -0.025 4.025
18 O -0.230 6.230
19 C -0.240 4.240
20 C -0.210 4.210
21 H 0.076 0.924
22 H 0.142 0.858
23 H 0.138 0.862
24 H 0.134 0.866
25 H 0.124 0.876
26 H 0.098 0.902
27 H 0.092 0.908
28 H 0.116 0.884
29 H 0.108 0.892
30 H 0.095 0.905
31 H 0.090 0.910
32 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 8.072 -3.510 4.630 9.945
hybrid contribution 0.157 1.025 -0.155 1.049
sum 8.229 -2.485 4.475 9.691
Atomic orbital electron populations
1.69891 1.06440 1.27375 1.49236 1.24991 0.94611 0.99257 0.93470
0.86964 0.80960 0.82953 0.78672 1.20577 1.22596 1.16959 1.20138
0.86338 0.94710 1.50808 0.90171 1.18201 0.94122 1.00189 0.84269
1.19037 0.91015 0.90498 0.96328 1.21120 1.00910 0.99484 0.95891
1.20700 0.99722 0.96607 0.94261 1.19978 1.05271 0.92368 1.00321
1.19549 0.97540 0.86440 0.91829 1.20344 1.03575 0.97106 0.93671
1.21724 1.02273 0.93817 0.96399 1.23873 0.88743 0.98830 0.91024
1.86799 1.48614 1.31407 1.56167 1.23037 1.02021 0.93911 1.05053
1.22874 1.01226 0.94142 1.02736 0.92442 0.85751 0.86151 0.86569
0.87595 0.90180 0.90798 0.88431 0.89218 0.90489 0.90959 0.89283
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16
2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16
3 Si 0.88 21.17 24.79 -169.99 -4.21 16.96 16
4 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16
5 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16
6 H -0.25 -5.50 4.11 56.52 0.23 -5.27 16
7 C -0.48 -12.91 8.71 -34.44 -0.30 -13.21 16
8 H 0.08 2.30 7.40 -52.48 -0.39 1.91 16
9 C 0.03 0.75 0.95 -156.81 -0.15 0.60 16
10 C 0.03 0.69 5.13 -104.76 -0.54 0.15 16
11 C -0.16 -3.10 8.46 -39.52 -0.33 -3.43 16
12 C -0.09 -1.64 10.02 -39.67 -0.40 -2.04 16
13 C -0.16 -2.83 10.06 -39.31 -0.40 -3.23 16
14 C 0.09 1.76 7.03 -38.95 -0.27 1.49 16
15 C -0.15 -3.01 5.97 -104.10 -0.62 -3.63 16
16 C -0.11 -1.89 6.75 -26.52 -0.18 -2.07 16
17 C 0.05 0.77 8.02 38.06 0.31 1.08 16
18 O -0.32 -5.69 11.12 -20.19 -0.22 -5.91 16
19 C -0.20 -4.24 6.73 -26.73 -0.18 -4.42 16
20 C -0.17 -3.46 9.94 -26.73 -0.27 -3.72 16
21 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
22 H 0.12 2.40 5.29 -52.49 -0.28 2.12 16
23 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16
24 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16
25 H 0.11 2.09 6.96 -51.93 -0.36 1.72 16
26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16
27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
28 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16
29 H 0.09 1.95 6.20 -51.93 -0.32 1.63 16
30 H 0.08 1.46 7.01 -51.93 -0.36 1.09 16
31 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16
32 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16
LS Contribution 259.19 15.07 3.91 3.91
Total: -1.00 -29.63 259.19 -7.18 -36.80
By element:
Atomic # 1 Polarization: 8.25 SS G_CDS: -3.99 Total: 4.26 kcal
Atomic # 6 Polarization: -26.86 SS G_CDS: -3.43 Total: -30.29 kcal
Atomic # 7 Polarization: -26.49 SS G_CDS: 0.77 Total: -25.72 kcal
Atomic # 8 Polarization: -5.69 SS G_CDS: -0.22 Total: -5.91 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -4.21 Total: 16.96 kcal
Total LS contribution 3.91 Total: 3.91 kcal
Total: -29.63 -7.18 -36.80 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260010710.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.256 kcal
(2) G-P(sol) polarization free energy of solvation -29.627 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.453 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds