Wall clock time and date at job start Mon Mar 30 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00239 * 2 1 4 4 H 1.48497 * 109.47358 * 264.89536 * 3 2 1 5 5 H 1.48507 * 109.47100 * 24.89542 * 3 2 1 6 6 H 1.48500 * 109.47136 * 144.89216 * 3 2 1 7 7 C 1.37876 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00075 * 6.43767 * 7 2 1 9 9 C 1.50696 * 120.00495 * 186.16341 * 7 2 1 10 10 C 1.50706 * 115.55125 * 91.05115 * 9 7 2 11 11 C 1.38394 * 120.01220 * 243.21696 * 10 9 7 12 12 C 1.38247 * 119.76648 * 179.97438 * 11 10 9 13 13 C 1.37976 * 120.35031 * 0.18210 * 12 11 10 14 14 C 1.39240 * 120.23581 * 359.97438 * 13 12 11 15 15 C 1.37692 * 120.00890 * 62.94011 * 10 9 7 16 16 C 1.51645 * 132.17396 * 359.14014 * 15 10 9 17 17 C 1.54709 * 101.94601 * 195.60902 * 16 15 10 18 18 O 1.36140 * 129.90134 * 179.07393 * 14 13 12 19 19 C 1.53003 * 117.49733 * 305.35102 * 9 7 2 20 20 C 1.53001 * 59.99982 * 252.50901 * 19 9 7 21 21 H 0.96999 * 119.99701 * 0.02562 * 1 2 3 22 22 H 1.07994 * 120.11465 * 359.94466 * 11 10 9 23 23 H 1.07996 * 119.82325 * 180.20647 * 12 11 10 24 24 H 1.07997 * 119.87730 * 180.02562 * 13 12 11 25 25 H 1.08999 * 110.94094 * 313.77112 * 16 15 10 26 26 H 1.08999 * 110.93801 * 77.44529 * 16 15 10 27 27 H 1.09006 * 110.74902 * 93.08640 * 17 16 15 28 28 H 1.08996 * 110.75023 * 216.25865 * 17 16 15 29 29 H 1.09000 * 117.49619 * 359.97438 * 19 9 7 30 30 H 1.08993 * 117.50036 * 145.01851 * 19 9 7 31 31 H 1.09008 * 117.49469 * 252.51131 * 20 19 9 32 32 H 1.08994 * 117.50092 * 107.48901 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6046 1.9841 -1.3945 5 1 1.3969 2.6814 0.5894 6 1 3.4886 1.4736 0.8052 7 6 2.0045 -1.1940 0.0005 8 1 1.4696 -2.1265 -0.1039 9 6 3.5049 -1.1979 0.1406 10 6 4.0258 -1.2968 1.5514 11 6 4.7673 -0.2598 2.0898 12 6 5.2422 -0.3557 3.3846 13 6 4.9838 -1.4807 4.1404 14 6 4.2413 -2.5298 3.6049 15 6 3.7592 -2.4166 2.3069 16 6 2.9737 -3.6800 2.0128 17 6 2.7731 -4.2694 3.4290 18 8 3.8879 -3.7219 4.1595 19 6 4.3093 -0.3566 -0.8524 20 6 4.3156 -1.8827 -0.9615 21 1 -0.4849 0.8401 -0.0004 22 1 4.9747 0.6210 1.5004 23 1 5.8181 0.4545 3.8068 24 1 5.3581 -1.5473 5.1513 25 1 2.0156 -3.4441 1.5498 26 1 3.5505 -4.3601 1.3860 27 1 1.8250 -3.9394 3.8539 28 1 2.8259 -5.3578 3.4054 29 1 3.7532 0.1992 -1.6073 30 1 5.2154 0.1255 -0.4856 31 1 5.2260 -2.4046 -0.6662 32 1 3.7637 -2.3306 -1.7878 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260010710.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:46 Heat of formation + Delta-G solvation = 20.453058 kcal Electronic energy + Delta-G solvation = -16076.371058 eV Core-core repulsion = 13582.134447 eV Total energy + Delta-G solvation = -2494.236611 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53590 -37.81488 -35.69735 -32.15127 -31.92564 -29.25844 -28.59837 -25.84730 -23.15207 -22.41384 -21.52743 -20.84238 -19.05702 -16.96199 -16.38153 -15.87714 -15.42558 -15.07801 -14.84867 -13.96860 -13.17815 -12.87481 -12.74138 -12.64991 -12.35004 -12.07805 -11.36625 -11.21535 -11.11125 -10.95596 -10.80422 -10.38572 -10.27522 -9.96684 -9.60674 -9.35471 -8.71996 -8.49651 -7.85348 -7.53473 -6.17483 -4.20702 1.92978 2.02469 3.28041 3.38853 3.42233 3.74442 4.32293 4.40441 4.85010 5.05556 5.12699 5.23879 5.42929 5.46551 5.58584 5.77846 5.87127 5.92835 5.96520 6.07360 6.16329 6.25360 6.42858 6.54681 6.59687 6.66757 6.77840 6.93287 7.03504 7.07904 7.26173 7.38779 7.66375 7.77591 8.41156 8.82715 9.45615 10.93188 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.011218 C = 0.010181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.679908 B = 2495.349662 C = 2749.523487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.245 1.245 7 C -0.483 4.483 8 H 0.080 0.920 9 C 0.033 3.967 10 C 0.032 3.968 11 C -0.156 4.156 12 C -0.095 4.095 13 C -0.161 4.161 14 C 0.091 3.909 15 C -0.146 4.146 16 C -0.105 4.105 17 C 0.050 3.950 18 O -0.315 6.315 19 C -0.203 4.203 20 C -0.173 4.173 21 H 0.266 0.734 22 H 0.125 0.875 23 H 0.121 0.879 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.172 -3.490 4.439 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.123 4.123 3 Si 0.705 3.295 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.170 1.170 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.032 3.968 10 C 0.031 3.969 11 C -0.174 4.174 12 C -0.113 4.113 13 C -0.179 4.179 14 C 0.046 3.954 15 C -0.147 4.147 16 C -0.142 4.142 17 C -0.025 4.025 18 O -0.230 6.230 19 C -0.240 4.240 20 C -0.210 4.210 21 H 0.076 0.924 22 H 0.142 0.858 23 H 0.138 0.862 24 H 0.134 0.866 25 H 0.124 0.876 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.072 -3.510 4.630 9.945 hybrid contribution 0.157 1.025 -0.155 1.049 sum 8.229 -2.485 4.475 9.691 Atomic orbital electron populations 1.69891 1.06440 1.27375 1.49236 1.24991 0.94611 0.99257 0.93470 0.86964 0.80960 0.82953 0.78672 1.20577 1.22596 1.16959 1.20138 0.86338 0.94710 1.50808 0.90171 1.18201 0.94122 1.00189 0.84269 1.19037 0.91015 0.90498 0.96328 1.21120 1.00910 0.99484 0.95891 1.20700 0.99722 0.96607 0.94261 1.19978 1.05271 0.92368 1.00321 1.19549 0.97540 0.86440 0.91829 1.20344 1.03575 0.97106 0.93671 1.21724 1.02273 0.93817 0.96399 1.23873 0.88743 0.98830 0.91024 1.86799 1.48614 1.31407 1.56167 1.23037 1.02021 0.93911 1.05053 1.22874 1.01226 0.94142 1.02736 0.92442 0.85751 0.86151 0.86569 0.87595 0.90180 0.90798 0.88431 0.89218 0.90489 0.90959 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 21.17 24.79 -169.99 -4.21 16.96 16 4 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 5 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.25 -5.50 4.11 56.52 0.23 -5.27 16 7 C -0.48 -12.91 8.71 -34.44 -0.30 -13.21 16 8 H 0.08 2.30 7.40 -52.48 -0.39 1.91 16 9 C 0.03 0.75 0.95 -156.81 -0.15 0.60 16 10 C 0.03 0.69 5.13 -104.76 -0.54 0.15 16 11 C -0.16 -3.10 8.46 -39.52 -0.33 -3.43 16 12 C -0.09 -1.64 10.02 -39.67 -0.40 -2.04 16 13 C -0.16 -2.83 10.06 -39.31 -0.40 -3.23 16 14 C 0.09 1.76 7.03 -38.95 -0.27 1.49 16 15 C -0.15 -3.01 5.97 -104.10 -0.62 -3.63 16 16 C -0.11 -1.89 6.75 -26.52 -0.18 -2.07 16 17 C 0.05 0.77 8.02 38.06 0.31 1.08 16 18 O -0.32 -5.69 11.12 -20.19 -0.22 -5.91 16 19 C -0.20 -4.24 6.73 -26.73 -0.18 -4.42 16 20 C -0.17 -3.46 9.94 -26.73 -0.27 -3.72 16 21 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.12 2.40 5.29 -52.49 -0.28 2.12 16 23 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 24 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 25 H 0.11 2.09 6.96 -51.93 -0.36 1.72 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.95 6.20 -51.93 -0.32 1.63 16 30 H 0.08 1.46 7.01 -51.93 -0.36 1.09 16 31 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 32 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 259.19 15.07 3.91 3.91 Total: -1.00 -29.63 259.19 -7.18 -36.80 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.99 Total: 4.26 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -3.43 Total: -30.29 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.77 Total: -25.72 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.22 Total: -5.91 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.21 Total: 16.96 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.63 -7.18 -36.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010710.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.256 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds