Wall clock time and date at job start Mon Mar 30 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00239 * 2 1 4 4 H 1.48497 * 109.47358 * 264.89536 * 3 2 1 5 5 H 1.48507 * 109.47100 * 24.89542 * 3 2 1 6 6 H 1.48500 * 109.47136 * 144.89216 * 3 2 1 7 7 C 1.37876 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00075 * 6.43767 * 7 2 1 9 9 C 1.50696 * 120.00495 * 186.16341 * 7 2 1 10 10 C 1.50706 * 115.55125 * 91.05115 * 9 7 2 11 11 C 1.38394 * 120.01220 * 243.21696 * 10 9 7 12 12 C 1.38247 * 119.76648 * 179.97438 * 11 10 9 13 13 C 1.37976 * 120.35031 * 0.18210 * 12 11 10 14 14 C 1.39240 * 120.23581 * 359.97438 * 13 12 11 15 15 C 1.37692 * 120.00890 * 62.94011 * 10 9 7 16 16 C 1.51645 * 132.17396 * 359.14014 * 15 10 9 17 17 C 1.54709 * 101.94601 * 195.60902 * 16 15 10 18 18 O 1.36140 * 129.90134 * 179.07393 * 14 13 12 19 19 C 1.53003 * 117.49733 * 305.35102 * 9 7 2 20 20 C 1.53001 * 59.99982 * 252.50901 * 19 9 7 21 21 H 0.96999 * 119.99701 * 0.02562 * 1 2 3 22 22 H 1.07994 * 120.11465 * 359.94466 * 11 10 9 23 23 H 1.07996 * 119.82325 * 180.20647 * 12 11 10 24 24 H 1.07997 * 119.87730 * 180.02562 * 13 12 11 25 25 H 1.08999 * 110.94094 * 313.77112 * 16 15 10 26 26 H 1.08999 * 110.93801 * 77.44529 * 16 15 10 27 27 H 1.09006 * 110.74902 * 93.08640 * 17 16 15 28 28 H 1.08996 * 110.75023 * 216.25865 * 17 16 15 29 29 H 1.09000 * 117.49619 * 359.97438 * 19 9 7 30 30 H 1.08993 * 117.50036 * 145.01851 * 19 9 7 31 31 H 1.09008 * 117.49469 * 252.51131 * 20 19 9 32 32 H 1.08994 * 117.50092 * 107.48901 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6046 1.9841 -1.3945 5 1 1.3969 2.6814 0.5894 6 1 3.4886 1.4736 0.8052 7 6 2.0045 -1.1940 0.0005 8 1 1.4696 -2.1265 -0.1039 9 6 3.5049 -1.1979 0.1406 10 6 4.0258 -1.2968 1.5514 11 6 4.7673 -0.2598 2.0898 12 6 5.2422 -0.3557 3.3846 13 6 4.9838 -1.4807 4.1404 14 6 4.2413 -2.5298 3.6049 15 6 3.7592 -2.4166 2.3069 16 6 2.9737 -3.6800 2.0128 17 6 2.7731 -4.2694 3.4290 18 8 3.8879 -3.7219 4.1595 19 6 4.3093 -0.3566 -0.8524 20 6 4.3156 -1.8827 -0.9615 21 1 -0.4849 0.8401 -0.0004 22 1 4.9747 0.6210 1.5004 23 1 5.8181 0.4545 3.8068 24 1 5.3581 -1.5473 5.1513 25 1 2.0156 -3.4441 1.5498 26 1 3.5505 -4.3601 1.3860 27 1 1.8250 -3.9394 3.8539 28 1 2.8259 -5.3578 3.4054 29 1 3.7532 0.1992 -1.6073 30 1 5.2154 0.1255 -0.4856 31 1 5.2260 -2.4046 -0.6662 32 1 3.7637 -2.3306 -1.7878 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260010710.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:46 Heat of formation + Delta-G solvation = 2.842582 kcal Electronic energy + Delta-G solvation = -16077.134706 eV Core-core repulsion = 13582.134447 eV Total energy + Delta-G solvation = -2495.000259 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.94273 -39.37140 -37.22385 -34.24112 -33.33896 -30.70157 -29.98112 -27.86734 -24.58616 -23.94455 -23.07473 -22.33254 -20.74238 -18.78876 -17.79087 -17.32604 -17.04319 -16.62614 -16.47899 -15.54924 -14.78158 -14.69748 -14.37435 -14.11602 -13.78788 -13.48598 -13.13076 -12.88391 -12.71580 -12.43840 -12.42607 -12.02311 -11.70584 -11.69219 -11.36194 -11.12464 -10.65283 -10.34244 -9.36559 -8.97035 -8.30223 -6.36432 0.49364 0.55848 1.36252 1.40873 1.52542 2.38410 2.41466 2.85763 3.07548 3.21269 3.71209 3.82930 3.97543 4.18489 4.27158 4.31200 4.39705 4.42281 4.55298 4.63057 4.70081 4.81875 4.90216 5.00950 5.07229 5.13412 5.33337 5.43269 5.50234 5.58813 5.69738 5.79554 5.87198 6.29968 6.35758 6.70180 7.32957 8.83857 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.011218 C = 0.010181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.679908 B = 2495.349662 C = 2749.523487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.270 1.270 5 H -0.309 1.309 6 H -0.215 1.215 7 C -0.476 4.476 8 H 0.040 0.960 9 C 0.012 3.988 10 C 0.007 3.993 11 C -0.170 4.170 12 C -0.084 4.084 13 C -0.158 4.158 14 C 0.079 3.921 15 C -0.175 4.175 16 C -0.106 4.106 17 C 0.054 3.946 18 O -0.319 6.319 19 C -0.195 4.195 20 C -0.159 4.159 21 H 0.264 0.736 22 H 0.131 0.869 23 H 0.161 0.839 24 H 0.146 0.854 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.989 -2.997 5.756 12.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.176 4.176 3 Si 0.755 3.245 4 H -0.196 1.196 5 H -0.238 1.238 6 H -0.137 1.137 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.011 3.989 10 C 0.006 3.994 11 C -0.188 4.188 12 C -0.102 4.102 13 C -0.177 4.177 14 C 0.034 3.966 15 C -0.176 4.176 16 C -0.143 4.143 17 C -0.020 4.020 18 O -0.234 6.234 19 C -0.232 4.232 20 C -0.196 4.196 21 H 0.073 0.927 22 H 0.149 0.851 23 H 0.179 0.821 24 H 0.164 0.836 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.154 0.846 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.918 -3.039 5.943 12.797 hybrid contribution -0.729 0.733 -0.539 1.167 sum 10.189 -2.305 5.403 11.761 Atomic orbital electron populations 1.70041 1.08321 1.28001 1.52171 1.25820 0.95216 1.02945 0.93597 0.86117 0.80665 0.78223 0.79499 1.19564 1.23759 1.13731 1.20294 0.88961 0.92985 1.49104 0.94222 1.18034 0.91805 1.02983 0.86079 1.19021 0.92927 0.91911 0.95542 1.21302 1.01245 0.99054 0.97204 1.21125 0.98642 0.97380 0.93054 1.20439 1.03946 0.91646 1.01638 1.19859 0.97902 0.87267 0.91527 1.20666 1.04442 0.97788 0.94685 1.21706 1.00625 0.93847 0.98134 1.24042 0.88258 1.00817 0.88868 1.86786 1.49198 1.31036 1.56349 1.23072 1.02228 0.94280 1.03610 1.22884 1.01322 0.94164 1.01248 0.92715 0.85130 0.82109 0.83594 0.90662 0.89068 0.90690 0.84590 0.90350 0.87796 0.88662 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 2 C 0.02 1.26 5.47 84.65 0.46 1.72 16 3 Si 0.93 43.53 24.79 68.60 1.70 45.23 16 4 H -0.27 -12.13 6.87 99.48 0.68 -11.44 16 5 H -0.31 -14.94 7.11 99.48 0.71 -14.24 16 6 H -0.21 -8.89 4.11 99.48 0.41 -8.48 16 7 C -0.48 -26.30 8.71 25.60 0.22 -26.08 16 8 H 0.04 2.43 7.40 -2.91 -0.02 2.41 16 9 C 0.01 0.53 0.95 -53.67 -0.05 0.48 16 10 C 0.01 0.27 5.13 -19.95 -0.10 0.17 16 11 C -0.17 -6.21 8.46 22.31 0.19 -6.02 16 12 C -0.08 -2.56 10.02 22.21 0.22 -2.34 16 13 C -0.16 -4.98 10.06 22.45 0.23 -4.76 16 14 C 0.08 2.89 7.03 22.68 0.16 3.05 16 15 C -0.17 -7.05 5.97 -19.53 -0.12 -7.17 16 16 C -0.11 -3.83 6.75 30.73 0.21 -3.62 16 17 C 0.05 1.61 8.02 72.56 0.58 2.19 16 18 O -0.32 -10.82 11.12 -95.14 -1.06 -11.88 16 19 C -0.20 -7.71 6.73 30.60 0.21 -7.50 16 20 C -0.16 -6.17 9.94 30.60 0.30 -5.86 16 21 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 22 H 0.13 4.50 5.29 -2.91 -0.02 4.49 16 23 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 24 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 25 H 0.07 3.14 6.96 -2.39 -0.02 3.13 16 26 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.08 3.27 6.20 -2.39 -0.01 3.26 16 30 H 0.10 3.54 7.01 -2.39 -0.02 3.52 16 31 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 32 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -65.87 259.19 4.25 -61.61 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.80 Total: 19.09 kcal Atomic # 6 Polarization: -58.25 SS G_CDS: 2.51 Total: -55.74 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.30 Total: -58.32 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.06 Total: -11.88 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.70 Total: 45.23 kcal Total: -65.87 4.25 -61.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010710.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.456 kcal (2) G-P(sol) polarization free energy of solvation -65.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds