Wall clock time and date at job start Mon Mar 30 2020 03:23:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86799 * 120.00239 * 2 1
4 4 H 1.48497 * 109.47358 * 264.89536 * 3 2 1
5 5 H 1.48507 * 109.47100 * 24.89542 * 3 2 1
6 6 H 1.48500 * 109.47136 * 144.89216 * 3 2 1
7 7 C 1.37876 * 119.99986 * 179.97438 * 2 1 3
8 8 H 1.08009 * 120.00075 * 6.43767 * 7 2 1
9 9 C 1.50696 * 120.00495 * 186.16341 * 7 2 1
10 10 C 1.50706 * 115.55125 * 91.05115 * 9 7 2
11 11 C 1.38394 * 120.01220 * 243.21696 * 10 9 7
12 12 C 1.38247 * 119.76648 * 179.97438 * 11 10 9
13 13 C 1.37976 * 120.35031 * 0.18210 * 12 11 10
14 14 C 1.39240 * 120.23581 * 359.97438 * 13 12 11
15 15 C 1.37692 * 120.00890 * 62.94011 * 10 9 7
16 16 C 1.51645 * 132.17396 * 359.14014 * 15 10 9
17 17 C 1.54709 * 101.94601 * 195.60902 * 16 15 10
18 18 O 1.36140 * 129.90134 * 179.07393 * 14 13 12
19 19 C 1.53003 * 117.49733 * 305.35102 * 9 7 2
20 20 C 1.53001 * 59.99982 * 252.50901 * 19 9 7
21 21 H 0.96999 * 119.99701 * 0.02562 * 1 2 3
22 22 H 1.07994 * 120.11465 * 359.94466 * 11 10 9
23 23 H 1.07996 * 119.82325 * 180.20647 * 12 11 10
24 24 H 1.07997 * 119.87730 * 180.02562 * 13 12 11
25 25 H 1.08999 * 110.94094 * 313.77112 * 16 15 10
26 26 H 1.08999 * 110.93801 * 77.44529 * 16 15 10
27 27 H 1.09006 * 110.74902 * 93.08640 * 17 16 15
28 28 H 1.08996 * 110.75023 * 216.25865 * 17 16 15
29 29 H 1.09000 * 117.49619 * 359.97438 * 19 9 7
30 30 H 1.08993 * 117.50036 * 145.01851 * 19 9 7
31 31 H 1.09008 * 117.49469 * 252.51131 * 20 19 9
32 32 H 1.08994 * 117.50092 * 107.48901 * 20 19 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.6046 1.9841 -1.3945
5 1 1.3969 2.6814 0.5894
6 1 3.4886 1.4736 0.8052
7 6 2.0045 -1.1940 0.0005
8 1 1.4696 -2.1265 -0.1039
9 6 3.5049 -1.1979 0.1406
10 6 4.0258 -1.2968 1.5514
11 6 4.7673 -0.2598 2.0898
12 6 5.2422 -0.3557 3.3846
13 6 4.9838 -1.4807 4.1404
14 6 4.2413 -2.5298 3.6049
15 6 3.7592 -2.4166 2.3069
16 6 2.9737 -3.6800 2.0128
17 6 2.7731 -4.2694 3.4290
18 8 3.8879 -3.7219 4.1595
19 6 4.3093 -0.3566 -0.8524
20 6 4.3156 -1.8827 -0.9615
21 1 -0.4849 0.8401 -0.0004
22 1 4.9747 0.6210 1.5004
23 1 5.8181 0.4545 3.8068
24 1 5.3581 -1.5473 5.1513
25 1 2.0156 -3.4441 1.5498
26 1 3.5505 -4.3601 1.3860
27 1 1.8250 -3.9394 3.8539
28 1 2.8259 -5.3578 3.4054
29 1 3.7532 0.1992 -1.6073
30 1 5.2154 0.1255 -0.4856
31 1 5.2260 -2.4046 -0.6662
32 1 3.7637 -2.3306 -1.7878
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260010710.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:46
Heat of formation + Delta-G solvation = 2.842582 kcal
Electronic energy + Delta-G solvation = -16077.134706 eV
Core-core repulsion = 13582.134447 eV
Total energy + Delta-G solvation = -2495.000259 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.105 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.94273 -39.37140 -37.22385 -34.24112 -33.33896 -30.70157 -29.98112 -27.86734
-24.58616 -23.94455 -23.07473 -22.33254 -20.74238 -18.78876 -17.79087 -17.32604
-17.04319 -16.62614 -16.47899 -15.54924 -14.78158 -14.69748 -14.37435 -14.11602
-13.78788 -13.48598 -13.13076 -12.88391 -12.71580 -12.43840 -12.42607 -12.02311
-11.70584 -11.69219 -11.36194 -11.12464 -10.65283 -10.34244 -9.36559 -8.97035
-8.30223 -6.36432 0.49364 0.55848 1.36252 1.40873 1.52542 2.38410
2.41466 2.85763 3.07548 3.21269 3.71209 3.82930 3.97543 4.18489
4.27158 4.31200 4.39705 4.42281 4.55298 4.63057 4.70081 4.81875
4.90216 5.00950 5.07229 5.13412 5.33337 5.43269 5.50234 5.58813
5.69738 5.79554 5.87198 6.29968 6.35758 6.70180 7.32957 8.83857
Molecular weight = 230.10amu
Principal moments of inertia in cm(-1)
A = 0.026000 B = 0.011218 C = 0.010181
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1076.679908 B = 2495.349662 C = 2749.523487
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.946 5.946
2 C 0.022 3.978
3 Si 0.929 3.071
4 H -0.270 1.270
5 H -0.309 1.309
6 H -0.215 1.215
7 C -0.476 4.476
8 H 0.040 0.960
9 C 0.012 3.988
10 C 0.007 3.993
11 C -0.170 4.170
12 C -0.084 4.084
13 C -0.158 4.158
14 C 0.079 3.921
15 C -0.175 4.175
16 C -0.106 4.106
17 C 0.054 3.946
18 O -0.319 6.319
19 C -0.195 4.195
20 C -0.159 4.159
21 H 0.264 0.736
22 H 0.131 0.869
23 H 0.161 0.839
24 H 0.146 0.854
25 H 0.075 0.925
26 H 0.091 0.909
27 H 0.075 0.925
28 H 0.136 0.864
29 H 0.078 0.922
30 H 0.104 0.896
31 H 0.095 0.905
32 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.989 -2.997 5.756 12.762
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.585 5.585
2 C -0.176 4.176
3 Si 0.755 3.245
4 H -0.196 1.196
5 H -0.238 1.238
6 H -0.137 1.137
7 C -0.513 4.513
8 H 0.058 0.942
9 C 0.011 3.989
10 C 0.006 3.994
11 C -0.188 4.188
12 C -0.102 4.102
13 C -0.177 4.177
14 C 0.034 3.966
15 C -0.176 4.176
16 C -0.143 4.143
17 C -0.020 4.020
18 O -0.234 6.234
19 C -0.232 4.232
20 C -0.196 4.196
21 H 0.073 0.927
22 H 0.149 0.851
23 H 0.179 0.821
24 H 0.164 0.836
25 H 0.093 0.907
26 H 0.109 0.891
27 H 0.093 0.907
28 H 0.154 0.846
29 H 0.096 0.904
30 H 0.122 0.878
31 H 0.113 0.887
32 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 10.918 -3.039 5.943 12.797
hybrid contribution -0.729 0.733 -0.539 1.167
sum 10.189 -2.305 5.403 11.761
Atomic orbital electron populations
1.70041 1.08321 1.28001 1.52171 1.25820 0.95216 1.02945 0.93597
0.86117 0.80665 0.78223 0.79499 1.19564 1.23759 1.13731 1.20294
0.88961 0.92985 1.49104 0.94222 1.18034 0.91805 1.02983 0.86079
1.19021 0.92927 0.91911 0.95542 1.21302 1.01245 0.99054 0.97204
1.21125 0.98642 0.97380 0.93054 1.20439 1.03946 0.91646 1.01638
1.19859 0.97902 0.87267 0.91527 1.20666 1.04442 0.97788 0.94685
1.21706 1.00625 0.93847 0.98134 1.24042 0.88258 1.00817 0.88868
1.86786 1.49198 1.31036 1.56349 1.23072 1.02228 0.94280 1.03610
1.22884 1.01322 0.94164 1.01248 0.92715 0.85130 0.82109 0.83594
0.90662 0.89068 0.90690 0.84590 0.90350 0.87796 0.88662 0.89814
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16
2 C 0.02 1.26 5.47 84.65 0.46 1.72 16
3 Si 0.93 43.53 24.79 68.60 1.70 45.23 16
4 H -0.27 -12.13 6.87 99.48 0.68 -11.44 16
5 H -0.31 -14.94 7.11 99.48 0.71 -14.24 16
6 H -0.21 -8.89 4.11 99.48 0.41 -8.48 16
7 C -0.48 -26.30 8.71 25.60 0.22 -26.08 16
8 H 0.04 2.43 7.40 -2.91 -0.02 2.41 16
9 C 0.01 0.53 0.95 -53.67 -0.05 0.48 16
10 C 0.01 0.27 5.13 -19.95 -0.10 0.17 16
11 C -0.17 -6.21 8.46 22.31 0.19 -6.02 16
12 C -0.08 -2.56 10.02 22.21 0.22 -2.34 16
13 C -0.16 -4.98 10.06 22.45 0.23 -4.76 16
14 C 0.08 2.89 7.03 22.68 0.16 3.05 16
15 C -0.17 -7.05 5.97 -19.53 -0.12 -7.17 16
16 C -0.11 -3.83 6.75 30.73 0.21 -3.62 16
17 C 0.05 1.61 8.02 72.56 0.58 2.19 16
18 O -0.32 -10.82 11.12 -95.14 -1.06 -11.88 16
19 C -0.20 -7.71 6.73 30.60 0.21 -7.50 16
20 C -0.16 -6.17 9.94 30.60 0.30 -5.86 16
21 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16
22 H 0.13 4.50 5.29 -2.91 -0.02 4.49 16
23 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16
24 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16
25 H 0.07 3.14 6.96 -2.39 -0.02 3.13 16
26 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16
27 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16
28 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16
29 H 0.08 3.27 6.20 -2.39 -0.01 3.26 16
30 H 0.10 3.54 7.01 -2.39 -0.02 3.52 16
31 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16
32 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16
Total: -1.00 -65.87 259.19 4.25 -61.61
By element:
Atomic # 1 Polarization: 18.29 SS G_CDS: 0.80 Total: 19.09 kcal
Atomic # 6 Polarization: -58.25 SS G_CDS: 2.51 Total: -55.74 kcal
Atomic # 7 Polarization: -58.62 SS G_CDS: 0.30 Total: -58.32 kcal
Atomic # 8 Polarization: -10.82 SS G_CDS: -1.06 Total: -11.88 kcal
Atomic # 14 Polarization: 43.53 SS G_CDS: 1.70 Total: 45.23 kcal
Total: -65.87 4.25 -61.61 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260010710.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.456 kcal
(2) G-P(sol) polarization free energy of solvation -65.866 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.410 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.613 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.843 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds