Wall clock time and date at job start Mon Mar 30 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99724 * 2 1 4 4 H 1.48501 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47136 * 300.00117 * 3 2 1 6 6 H 1.48493 * 109.47397 * 60.00112 * 3 2 1 7 7 C 1.37873 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00251 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.46873 * 300.00037 * 9 7 2 11 11 N 1.46899 * 109.46986 * 60.00120 * 9 7 2 12 12 C 1.50697 * 109.47212 * 179.97438 * 9 7 2 13 13 C 1.39403 * 119.13958 * 125.00076 * 12 9 7 14 14 C 1.36519 * 119.91001 * 180.27836 * 13 12 9 15 15 C 1.40910 * 118.19943 * 359.51050 * 14 13 12 16 16 N 1.33595 * 121.19092 * 180.18961 * 15 14 13 17 17 C 1.31354 * 119.68415 * 180.27396 * 16 15 14 18 18 C 1.39694 * 120.58994 * 0.02562 * 17 16 15 19 19 N 1.31333 * 120.77364 * 0.02562 * 18 17 16 20 20 C 1.33873 * 119.78550 * 359.97438 * 19 18 17 21 21 N 1.31078 * 119.14279 * 305.02736 * 12 9 7 22 22 H 0.96993 * 120.00119 * 359.97438 * 1 2 3 23 23 H 1.00900 * 111.00115 * 296.04320 * 11 9 7 24 24 H 1.00902 * 111.00456 * 59.99726 * 11 9 7 25 25 H 1.08002 * 120.04130 * 359.97438 * 13 12 9 26 26 H 1.07995 * 120.89662 * 179.74817 * 14 13 12 27 27 H 1.07999 * 119.70966 * 179.97438 * 17 16 15 28 28 H 1.08003 * 119.61784 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 1 0.6248 -2.5563 0.8919 11 7 0.4061 -2.5778 -1.1974 12 6 2.2304 -3.6446 0.0015 13 6 2.1415 -4.6139 0.9993 14 6 3.0241 -5.6552 1.0175 15 6 4.0013 -5.7175 0.0042 16 7 4.8923 -6.7121 -0.0376 17 6 5.7938 -6.7381 -0.9925 18 6 5.8295 -5.7349 -1.9640 19 7 4.9643 -4.7471 -1.9420 20 6 4.0356 -4.6979 -0.9791 21 7 3.1439 -3.7031 -0.9367 22 1 -0.4850 0.8400 0.0004 23 1 -0.3013 -1.8583 -1.1891 24 1 0.9638 -2.5269 -2.0368 25 1 1.3784 -4.5385 1.7599 26 1 2.9723 -6.4128 1.7854 27 1 6.5145 -7.5417 -1.0265 28 1 6.5779 -5.7715 -2.7419 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260025693.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:30 Heat of formation + Delta-G solvation = 56.616269 kcal Electronic energy + Delta-G solvation = -15106.041978 eV Core-core repulsion = 12542.125929 eV Total energy + Delta-G solvation = -2563.916049 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.53966 -39.64368 -36.39275 -35.93105 -33.45533 -32.78772 -31.43855 -28.30930 -26.78265 -25.60430 -24.19618 -22.59079 -20.28225 -18.95471 -18.71441 -18.02922 -16.93307 -16.44989 -16.08834 -15.73543 -15.39941 -15.12928 -14.90713 -14.05952 -13.66049 -13.40105 -13.09396 -12.91209 -12.83025 -12.76229 -12.69476 -12.02309 -11.94837 -11.30907 -10.73542 -10.29894 -9.95302 -9.64026 -9.26090 -8.16776 -6.37702 -0.81994 -0.52726 0.94873 1.33722 1.37106 1.48202 1.84466 2.36049 2.67309 3.01335 3.07343 3.11311 3.19411 3.70760 3.82442 3.95156 4.19608 4.34943 4.52790 4.61535 4.73662 4.90834 5.12065 5.32780 5.62136 5.63695 5.96592 6.11598 6.54841 6.57035 6.82684 7.03529 7.17116 7.35463 8.80092 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.037383 B = 0.007287 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.816650 B = 3841.338039 C = 4191.411519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.027 3.973 3 Si 0.957 3.043 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.036 0.964 9 C 0.250 3.750 10 H 0.049 0.951 11 N -0.837 5.837 12 C 0.212 3.788 13 C -0.155 4.155 14 C -0.030 4.030 15 C -0.006 4.006 16 N -0.428 5.428 17 C 0.077 3.923 18 C 0.111 3.889 19 N -0.467 5.467 20 C 0.231 3.769 21 N -0.486 5.486 22 H 0.270 0.730 23 H 0.351 0.649 24 H 0.318 0.682 25 H 0.171 0.829 26 H 0.183 0.817 27 H 0.233 0.767 28 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.338 -12.857 0.324 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.783 3.217 4 H -0.208 1.208 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.589 4.589 8 H 0.054 0.946 9 C 0.139 3.861 10 H 0.067 0.933 11 N -0.366 5.366 12 C 0.056 3.944 13 C -0.176 4.176 14 C -0.057 4.057 15 C -0.131 4.131 16 N -0.143 5.143 17 C -0.101 4.101 18 C -0.069 4.069 19 N -0.182 5.182 20 C -0.009 4.009 21 N -0.196 5.196 22 H 0.079 0.921 23 H 0.166 0.834 24 H 0.127 0.873 25 H 0.188 0.812 26 H 0.200 0.800 27 H 0.249 0.751 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 8.829 -12.713 0.043 15.478 hybrid contribution 0.604 1.623 0.251 1.750 sum 9.433 -11.090 0.294 14.562 Atomic orbital electron populations 1.69798 1.06466 1.28069 1.50745 1.25601 0.95808 1.01900 0.94031 0.85529 0.78342 0.79763 0.78044 1.20830 1.20304 1.19710 1.21852 0.92860 0.92243 1.51943 0.94566 1.17996 0.88309 0.87681 0.92107 0.93334 1.59432 1.17943 1.55343 1.03901 1.22264 0.90648 0.93820 0.87633 1.22242 1.01119 0.94049 1.00237 1.21571 0.90320 0.97732 0.96053 1.20425 0.99277 0.94829 0.98569 1.68612 1.02155 1.20540 1.22955 1.25004 0.96099 0.99631 0.89329 1.25102 0.95019 0.87932 0.98876 1.68266 1.03043 1.25126 1.21792 1.20407 0.95018 0.92311 0.93121 1.67371 1.03777 1.22580 1.25920 0.92068 0.83362 0.87312 0.81198 0.79974 0.75111 0.75751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.04 11.54 21.45 0.25 -49.79 15 2 C 0.03 1.49 5.38 84.65 0.46 1.94 15 3 Si 0.96 44.38 29.54 68.60 2.03 46.41 15 4 H -0.28 -13.47 7.11 99.48 0.71 -12.77 15 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 15 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 7 C -0.55 -30.86 8.51 25.60 0.22 -30.64 15 8 H 0.04 2.16 7.67 -2.91 -0.02 2.14 15 9 C 0.25 12.75 3.01 43.42 0.13 12.88 15 10 H 0.05 2.54 7.84 -2.39 -0.02 2.52 15 11 N -0.84 -42.03 9.18 -174.96 -1.61 -43.64 15 12 C 0.21 9.68 5.70 42.95 0.24 9.93 15 13 C -0.15 -5.54 9.62 22.15 0.21 -5.33 15 14 C -0.03 -0.94 10.11 22.52 0.23 -0.71 15 15 C -0.01 -0.20 6.59 40.38 0.27 0.06 15 16 N -0.43 -11.86 10.46 -187.97 -1.97 -13.83 15 17 C 0.08 1.47 11.22 85.12 0.95 2.43 15 18 C 0.11 2.46 11.21 85.12 0.95 3.41 15 19 N -0.47 -17.00 10.55 -193.27 -2.04 -19.03 15 20 C 0.23 9.56 7.61 134.99 1.03 10.59 15 21 N -0.49 -23.31 9.89 -181.74 -1.80 -25.11 15 22 H 0.27 14.01 8.31 -92.71 -0.77 13.24 15 23 H 0.35 18.36 7.08 -89.69 -0.63 17.72 15 24 H 0.32 16.37 8.90 -89.69 -0.80 15.58 15 25 H 0.17 5.06 7.93 -2.91 -0.02 5.03 15 26 H 0.18 4.11 8.06 -2.91 -0.02 4.09 15 27 H 0.23 1.57 8.06 -2.91 -0.02 1.55 15 28 H 0.23 2.40 8.06 -2.91 -0.02 2.38 15 Total: -1.00 -71.49 253.34 -0.66 -72.16 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.22 Total: 28.28 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 4.69 Total: 4.56 kcal Atomic # 7 Polarization: -144.24 SS G_CDS: -7.16 Total: -151.40 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -71.49 -0.66 -72.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260025693.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.771 kcal (2) G-P(sol) polarization free energy of solvation -71.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds