Wall clock time and date at job start Mon Mar 30 2020 03:18:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 N 1.40439 * 126.87592 * 2 1
4 4 C 1.30844 * 106.96480 * 180.24356 * 3 2 1
5 5 N 1.32937 * 109.20601 * 359.78501 * 4 3 2
6 6 C 1.31723 * 109.77335 * 359.97438 * 5 4 3
7 7 C 1.48041 * 126.09451 * 179.97438 * 6 5 4
8 8 C 1.40169 * 120.83725 * 158.72778 * 7 6 5
9 9 C 1.38509 * 119.40934 * 180.02562 * 8 7 6
10 10 N 1.31477 * 121.15765 * 359.97411 * 9 8 7
11 11 C 1.33629 * 121.83027 * 0.02562 * 10 9 8
12 12 C 1.41424 * 119.77109 * 179.97438 * 11 10 9
13 13 H 1.07993 * 119.99613 * 180.02562 * 12 11 10
14 14 C 1.40041 * 119.99828 * 359.72909 * 12 11 10
15 15 N 1.30737 * 119.99957 * 0.26993 * 14 12 11
16 16 Si 1.86795 * 119.99989 * 180.27655 * 14 12 11
17 17 H 1.48507 * 109.47105 * 359.97438 * 16 14 12
18 18 H 1.48492 * 109.47222 * 119.99844 * 16 14 12
19 19 H 1.48502 * 109.46804 * 240.00126 * 16 14 12
20 20 C 1.39436 * 120.83688 * 338.98611 * 7 6 5
21 21 H 1.08996 * 109.47526 * 263.74232 * 1 2 3
22 22 H 1.09003 * 109.47301 * 23.74734 * 1 2 3
23 23 H 1.09001 * 109.47118 * 143.74261 * 1 2 3
24 24 H 1.08006 * 125.39621 * 179.75954 * 4 3 2
25 25 H 1.08000 * 120.29973 * 359.97438 * 8 7 6
26 26 H 1.07994 * 119.42199 * 180.02562 * 9 8 7
27 27 H 0.97002 * 120.00078 * 180.02562 * 15 14 12
28 28 H 1.08000 * 120.59031 * 0.02562 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.3077 1.1234 0.0000
4 6 3.5379 0.6778 -0.0053
5 7 3.5216 -0.6514 -0.0039
6 6 2.2766 -1.0818 0.0029
7 6 1.8432 -2.4973 0.0059
8 6 0.5627 -2.8557 0.4495
9 6 0.1882 -4.1891 0.4402
10 7 1.0124 -5.1243 0.0221
11 6 2.2434 -4.8367 -0.4108
12 6 3.0943 -5.8773 -0.8503
13 1 4.0900 -5.6490 -1.2006
14 6 2.6478 -7.2044 -0.8255
15 7 1.4425 -7.4807 -0.4010
16 14 3.7743 -8.5797 -1.3988
17 1 5.0756 -8.0073 -1.8280
18 1 3.9968 -9.5346 -0.2836
19 1 3.1458 -9.2905 -2.5412
20 6 2.7003 -3.5082 -0.4274
21 1 -0.3634 -0.1120 1.0215
22 1 -0.3634 0.9407 -0.4139
23 1 -0.3633 -0.8287 -0.6078
24 1 4.4260 1.2926 -0.0105
25 1 -0.1254 -2.0990 0.7963
26 1 -0.7984 -4.4655 0.7815
27 1 1.1333 -8.4000 -0.3835
28 1 3.6964 -3.2738 -0.7725
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260030406.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:13
Heat of formation + Delta-G solvation = 125.155213 kcal
Electronic energy + Delta-G solvation = -14996.295095 eV
Core-core repulsion = 12435.351118 eV
Total energy + Delta-G solvation = -2560.943977 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.086 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.61153 -38.20251 -34.14567 -33.53849 -32.16026 -30.12688 -29.38284 -27.17780
-25.78287 -23.01343 -21.95449 -20.99715 -20.09864 -17.65076 -16.41749 -15.66205
-15.42761 -14.86019 -14.57330 -14.21459 -13.99988 -12.99915 -12.95886 -12.71453
-12.41213 -12.25246 -11.53753 -11.30350 -11.24099 -10.82447 -10.55118 -10.03830
-9.85926 -9.63117 -9.40989 -9.36003 -8.06023 -7.82295 -7.74245 -6.53796
-4.65397 1.57389 2.57915 2.61705 2.79605 3.05291 3.08839 3.10074
3.61710 3.87588 4.54706 4.63488 4.79360 5.22327 5.28601 5.50935
5.61701 5.76651 5.94087 6.17605 6.48002 6.60991 6.69983 6.77039
6.98700 7.00953 7.14431 7.36928 7.42691 7.78704 8.10771 8.48093
8.49969 8.75714 9.94319 10.18156
Molecular weight = 230.09amu
Principal moments of inertia in cm(-1)
A = 0.045445 B = 0.006645 C = 0.005868
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 615.978086 B = 4212.389297 C = 4770.814225
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.098 3.902
2 N -0.380 5.380
3 N -0.340 5.340
4 C 0.194 3.806
5 N -0.541 5.541
6 C 0.348 3.652
7 C 0.012 3.988
8 C -0.314 4.314
9 C 0.131 3.869
10 N -0.478 5.478
11 C 0.249 3.751
12 C -0.419 4.419
13 H 0.089 0.911
14 C 0.067 3.933
15 N -0.710 5.710
16 Si 0.910 3.090
17 H -0.258 1.258
18 H -0.272 1.272
19 H -0.272 1.272
20 C -0.205 4.205
21 H 0.078 0.922
22 H 0.086 0.914
23 H 0.099 0.901
24 H 0.214 0.786
25 H 0.101 0.899
26 H 0.125 0.875
27 H 0.275 0.725
28 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.697 6.532 0.027 6.749
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.045 4.045
2 N -0.170 5.170
3 N -0.169 5.169
4 C -0.109 4.109
5 N -0.269 5.269
6 C 0.075 3.925
7 C 0.004 3.996
8 C -0.339 4.339
9 C -0.035 4.035
10 N -0.191 5.191
11 C 0.125 3.875
12 C -0.450 4.450
13 H 0.107 0.893
14 C -0.159 4.159
15 N -0.331 5.331
16 Si 0.734 3.266
17 H -0.182 1.182
18 H -0.197 1.197
19 H -0.197 1.197
20 C -0.231 4.231
21 H 0.096 0.904
22 H 0.104 0.896
23 H 0.117 0.883
24 H 0.230 0.770
25 H 0.119 0.881
26 H 0.142 0.858
27 H 0.086 0.914
28 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -2.067 6.089 0.049 6.431
hybrid contribution 0.515 0.363 -0.132 0.644
sum -1.552 6.452 -0.083 6.637
Atomic orbital electron populations
1.22099 0.74078 1.04635 1.03644 1.50278 1.07763 1.03785 1.55151
1.77936 1.02164 1.08416 1.28407 1.25841 0.95574 0.90868 0.98597
1.70731 1.19488 1.10670 1.25981 1.22791 0.85313 0.90421 0.93962
1.17497 0.95142 0.85042 1.01937 1.21419 0.96747 0.98095 1.17608
1.22429 0.98248 0.88430 0.94346 1.68706 1.03462 1.33238 1.13688
1.18594 0.89581 0.89892 0.89437 1.19756 1.00036 0.90292 1.34921
0.89316 1.26102 0.95427 1.00304 0.94098 1.70128 1.15343 1.20333
1.27293 0.86221 0.81027 0.80296 0.79082 1.18192 1.19707 1.19735
1.21950 0.99689 0.92952 1.08505 0.90356 0.89555 0.88259 0.77006
0.88073 0.85776 0.91424 0.86716
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.29 9.70 59.84 0.58 1.87 15
2 N -0.38 -6.82 4.06 -65.62 -0.27 -7.08 15
3 N -0.34 -6.04 12.70 29.26 0.37 -5.67 15
4 C 0.19 3.32 13.01 -91.97 -1.20 2.12 15
5 N -0.54 -11.07 11.09 -12.47 -0.14 -11.21 15
6 C 0.35 7.18 7.64 -155.46 -1.19 5.99 15
7 C 0.01 0.28 5.87 -104.71 -0.61 -0.34 15
8 C -0.31 -6.45 8.71 -38.76 -0.34 -6.79 15
9 C 0.13 2.93 11.17 -17.60 -0.20 2.73 15
10 N -0.48 -12.49 7.84 -11.21 -0.09 -12.57 15
11 C 0.25 6.56 6.55 -85.02 -0.56 6.00 15
12 C -0.42 -10.81 9.14 -37.69 -0.34 -11.15 15
13 H 0.09 2.15 7.85 -52.49 -0.41 1.74 15
14 C 0.07 1.63 5.50 -17.34 -0.10 1.53 15
15 N -0.71 -18.08 11.46 55.55 0.64 -17.45 15
16 Si 0.91 17.90 29.56 -169.99 -5.02 12.88 15
17 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15
18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15
19 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15
20 C -0.20 -4.99 9.53 -38.29 -0.36 -5.35 15
21 H 0.08 0.91 7.64 -51.93 -0.40 0.51 15
22 H 0.09 0.94 8.14 -51.93 -0.42 0.52 15
23 H 0.10 1.29 6.69 -51.93 -0.35 0.94 15
24 H 0.21 2.59 8.06 -52.48 -0.42 2.17 15
25 H 0.10 1.72 5.21 -52.49 -0.27 1.45 15
26 H 0.12 2.40 8.06 -52.49 -0.42 1.98 15
27 H 0.27 6.29 8.29 -40.82 -0.34 5.95 15
28 H 0.11 2.74 8.05 -52.49 -0.42 2.32 15
LS Contribution 252.82 15.07 3.81 3.81
Total: -1.00 -30.19 252.82 -7.27 -37.46
By element:
Atomic # 1 Polarization: 5.47 SS G_CDS: -2.25 Total: 3.21 kcal
Atomic # 6 Polarization: 0.94 SS G_CDS: -4.31 Total: -3.38 kcal
Atomic # 7 Polarization: -54.50 SS G_CDS: 0.52 Total: -53.98 kcal
Atomic # 14 Polarization: 17.90 SS G_CDS: -5.02 Total: 12.88 kcal
Total LS contribution 3.81 Total: 3.81 kcal
Total: -30.19 -7.27 -37.46 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260030406.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 162.617 kcal
(2) G-P(sol) polarization free energy of solvation -30.193 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.423 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) 125.155 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds