Wall clock time and date at job start Mon Mar 30 2020 03:18:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 N 1.40439 * 126.87592 * 2 1
4 4 C 1.30844 * 106.96480 * 180.24356 * 3 2 1
5 5 N 1.32937 * 109.20601 * 359.78501 * 4 3 2
6 6 C 1.31723 * 109.77335 * 359.97438 * 5 4 3
7 7 C 1.48041 * 126.09451 * 179.97438 * 6 5 4
8 8 C 1.40169 * 120.83725 * 158.72778 * 7 6 5
9 9 C 1.38509 * 119.40934 * 180.02562 * 8 7 6
10 10 N 1.31477 * 121.15765 * 359.97411 * 9 8 7
11 11 C 1.33629 * 121.83027 * 0.02562 * 10 9 8
12 12 C 1.41424 * 119.77109 * 179.97438 * 11 10 9
13 13 H 1.07993 * 119.99613 * 180.02562 * 12 11 10
14 14 C 1.40041 * 119.99828 * 359.72909 * 12 11 10
15 15 N 1.30737 * 119.99957 * 0.26993 * 14 12 11
16 16 Si 1.86795 * 119.99989 * 180.27655 * 14 12 11
17 17 H 1.48507 * 109.47105 * 359.97438 * 16 14 12
18 18 H 1.48492 * 109.47222 * 119.99844 * 16 14 12
19 19 H 1.48502 * 109.46804 * 240.00126 * 16 14 12
20 20 C 1.39436 * 120.83688 * 338.98611 * 7 6 5
21 21 H 1.08996 * 109.47526 * 263.74232 * 1 2 3
22 22 H 1.09003 * 109.47301 * 23.74734 * 1 2 3
23 23 H 1.09001 * 109.47118 * 143.74261 * 1 2 3
24 24 H 1.08006 * 125.39621 * 179.75954 * 4 3 2
25 25 H 1.08000 * 120.29973 * 359.97438 * 8 7 6
26 26 H 1.07994 * 119.42199 * 180.02562 * 9 8 7
27 27 H 0.97002 * 120.00078 * 180.02562 * 15 14 12
28 28 H 1.08000 * 120.59031 * 0.02562 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.3077 1.1234 0.0000
4 6 3.5379 0.6778 -0.0053
5 7 3.5216 -0.6514 -0.0039
6 6 2.2766 -1.0818 0.0029
7 6 1.8432 -2.4973 0.0059
8 6 0.5627 -2.8557 0.4495
9 6 0.1882 -4.1891 0.4402
10 7 1.0124 -5.1243 0.0221
11 6 2.2434 -4.8367 -0.4108
12 6 3.0943 -5.8773 -0.8503
13 1 4.0900 -5.6490 -1.2006
14 6 2.6478 -7.2044 -0.8255
15 7 1.4425 -7.4807 -0.4010
16 14 3.7743 -8.5797 -1.3988
17 1 5.0756 -8.0073 -1.8280
18 1 3.9968 -9.5346 -0.2836
19 1 3.1458 -9.2905 -2.5412
20 6 2.7003 -3.5082 -0.4274
21 1 -0.3634 -0.1120 1.0215
22 1 -0.3634 0.9407 -0.4139
23 1 -0.3633 -0.8287 -0.6078
24 1 4.4260 1.2926 -0.0105
25 1 -0.1254 -2.0990 0.7963
26 1 -0.7984 -4.4655 0.7815
27 1 1.1333 -8.4000 -0.3835
28 1 3.6964 -3.2738 -0.7725
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260030406.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:13
Heat of formation + Delta-G solvation = 107.250209 kcal
Electronic energy + Delta-G solvation = -14997.071514 eV
Core-core repulsion = 12435.351118 eV
Total energy + Delta-G solvation = -2561.720396 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.086 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-43.04063 -40.00451 -35.78215 -35.03816 -33.80418 -31.94427 -30.96127 -28.45883
-27.57467 -24.68162 -23.55366 -22.53395 -21.70705 -19.34377 -18.00926 -17.11256
-16.99133 -16.49822 -16.06393 -15.99998 -15.42515 -14.58655 -14.25034 -14.13216
-14.09120 -13.83137 -13.01201 -12.93904 -12.88029 -12.57259 -12.15577 -11.72122
-11.49859 -11.08880 -11.06621 -10.75373 -9.75139 -9.64631 -9.58174 -8.33786
-6.55445 -0.00698 0.83627 1.17196 1.34743 1.43760 1.52771 1.58662
2.08134 2.24107 2.82419 3.12143 3.55107 3.85533 3.91488 4.19567
4.31389 4.38173 4.49310 4.64841 4.76061 4.88587 5.16814 5.23952
5.32847 5.41917 5.45701 5.67278 5.73974 6.04093 6.23443 6.64297
6.89365 7.06412 8.11378 8.41400
Molecular weight = 230.09amu
Principal moments of inertia in cm(-1)
A = 0.045445 B = 0.006645 C = 0.005868
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 615.978086 B = 4212.389297 C = 4770.814225
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.084 3.916
2 N -0.373 5.373
3 N -0.341 5.341
4 C 0.194 3.806
5 N -0.568 5.568
6 C 0.321 3.679
7 C 0.016 3.984
8 C -0.291 4.291
9 C 0.117 3.883
10 N -0.510 5.510
11 C 0.225 3.775
12 C -0.460 4.460
13 H 0.088 0.912
14 C 0.026 3.974
15 N -0.748 5.748
16 Si 0.987 3.013
17 H -0.257 1.257
18 H -0.265 1.265
19 H -0.264 1.264
20 C -0.234 4.234
21 H 0.100 0.900
22 H 0.112 0.888
23 H 0.101 0.899
24 H 0.254 0.746
25 H 0.143 0.857
26 H 0.155 0.845
27 H 0.282 0.718
28 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.328 7.691 0.260 8.040
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 N -0.163 5.163
3 N -0.170 5.170
4 C -0.108 4.108
5 N -0.297 5.297
6 C 0.048 3.952
7 C 0.007 3.993
8 C -0.315 4.315
9 C -0.048 4.048
10 N -0.224 5.224
11 C 0.101 3.899
12 C -0.491 4.491
13 H 0.106 0.894
14 C -0.196 4.196
15 N -0.370 5.370
16 Si 0.807 3.193
17 H -0.180 1.180
18 H -0.190 1.190
19 H -0.189 1.189
20 C -0.259 4.259
21 H 0.118 0.882
22 H 0.131 0.869
23 H 0.120 0.880
24 H 0.270 0.730
25 H 0.161 0.839
26 H 0.172 0.828
27 H 0.093 0.907
28 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -2.729 7.275 0.287 7.775
hybrid contribution 0.599 0.250 -0.151 0.666
sum -2.130 7.525 0.136 7.822
Atomic orbital electron populations
1.22506 0.71522 1.06317 1.05332 1.50588 1.09221 1.02907 1.53538
1.77919 1.02485 1.08369 1.28215 1.26655 0.96795 0.89990 0.97407
1.70681 1.20086 1.12570 1.26338 1.22460 0.86230 0.90287 0.96221
1.17681 0.95310 0.85800 1.00529 1.21817 0.96488 0.98386 1.14847
1.23019 0.99031 0.88905 0.93831 1.68660 1.03897 1.35087 1.14753
1.18905 0.90143 0.90865 0.90018 1.20051 1.00458 0.91625 1.36945
0.89405 1.26943 0.96872 1.02157 0.93638 1.70189 1.17006 1.21334
1.28458 0.85087 0.78746 0.76757 0.78733 1.18009 1.18962 1.18882
1.21875 1.00068 0.93219 1.10785 0.88169 0.86948 0.88019 0.72984
0.83911 0.82757 0.90720 0.87675
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.89 9.70 127.77 1.24 3.13 15
2 N -0.37 -12.39 4.06 -361.52 -1.47 -13.86 15
3 N -0.34 -11.17 12.70 -61.35 -0.78 -11.95 15
4 C 0.19 6.18 13.01 180.82 2.35 8.54 15
5 N -0.57 -22.74 11.09 -193.37 -2.14 -24.89 15
6 C 0.32 12.89 7.64 136.89 1.05 13.94 15
7 C 0.02 0.69 5.87 -19.92 -0.12 0.58 15
8 C -0.29 -11.45 8.71 22.80 0.20 -11.25 15
9 C 0.12 5.12 11.17 84.81 0.95 6.07 15
10 N -0.51 -27.16 7.84 -189.37 -1.49 -28.64 15
11 C 0.23 12.29 6.55 40.20 0.26 12.55 15
12 C -0.46 -24.72 9.14 23.49 0.21 -24.50 15
13 H 0.09 4.49 7.85 -2.91 -0.02 4.47 15
14 C 0.03 1.31 5.50 85.29 0.47 1.78 15
15 N -0.75 -38.96 11.46 21.84 0.25 -38.71 15
16 Si 0.99 37.32 29.56 68.60 2.03 39.34 15
17 H -0.26 -9.48 7.11 99.48 0.71 -8.78 15
18 H -0.26 -9.62 7.11 99.48 0.71 -8.92 15
19 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15
20 C -0.23 -11.77 9.53 23.11 0.22 -11.55 15
21 H 0.10 1.88 7.64 -2.39 -0.02 1.86 15
22 H 0.11 1.99 8.14 -2.39 -0.02 1.98 15
23 H 0.10 2.28 6.69 -2.39 -0.02 2.27 15
24 H 0.25 5.40 8.06 -2.91 -0.02 5.38 15
25 H 0.14 4.33 5.21 -2.91 -0.02 4.31 15
26 H 0.16 5.66 8.06 -2.91 -0.02 5.63 15
27 H 0.28 13.13 8.29 -92.71 -0.77 12.36 15
28 H 0.11 5.31 8.05 -2.91 -0.02 5.29 15
Total: -1.00 -66.83 252.82 4.43 -62.41
By element:
Atomic # 1 Polarization: 15.82 SS G_CDS: 1.19 Total: 17.01 kcal
Atomic # 6 Polarization: -7.56 SS G_CDS: 6.83 Total: -0.72 kcal
Atomic # 7 Polarization: -112.41 SS G_CDS: -5.63 Total: -118.04 kcal
Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.34 kcal
Total: -66.83 4.43 -62.41 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260030406.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 169.659 kcal
(2) G-P(sol) polarization free energy of solvation -66.834 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.408 kcal
(6) G-S(sol) free energy of system = (1) + (5) 107.250 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds