Wall clock time and date at job start Mon Mar 30 2020 03:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37756 * 120.19868 * 2 1 4 4 C 1.38722 * 120.27644 * 179.97438 * 3 2 1 5 5 C 1.37862 * 120.68963 * 0.02890 * 4 3 2 6 6 C 1.38881 * 119.95868 * 359.96953 * 5 4 3 7 7 O 1.34832 * 133.42309 * 179.97438 * 6 5 4 8 8 C 1.34450 * 110.89654 * 180.02562 * 7 6 5 9 9 C 1.50704 * 124.91974 * 179.97438 * 8 7 6 10 10 H 1.08991 * 109.47168 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46938 * 60.02353 * 9 8 7 12 12 C 1.50699 * 109.46735 * 300.02549 * 9 8 7 13 13 H 1.07994 * 120.00215 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99317 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00349 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99728 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47249 * 60.00169 * 16 14 12 18 18 H 1.48500 * 109.46892 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46954 * 300.00071 * 16 14 12 20 20 C 1.33996 * 110.16227 * 0.02562 * 8 7 6 21 21 C 1.39379 * 120.20155 * 179.72054 * 2 1 3 22 22 H 1.09002 * 109.47152 * 89.99947 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00047 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00028 * 1 2 3 25 25 H 1.08006 * 119.86349 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.65293 * 179.97438 * 4 3 2 27 27 H 1.07999 * 120.01773 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.46951 * 60.00035 * 11 9 8 29 29 H 1.09000 * 109.47267 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.47344 * 300.00092 * 11 9 8 31 31 H 0.97005 * 119.99888 * 180.02562 * 15 14 12 32 32 H 1.07996 * 126.90523 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1906 0.0000 4 6 3.5872 1.1925 0.0005 5 6 4.2924 0.0079 0.0005 6 6 3.6133 -1.2035 0.0005 7 8 4.0143 -2.4908 0.0000 8 6 2.9577 -3.3223 -0.0002 9 6 3.0440 -4.8269 -0.0013 10 1 2.0388 -5.2484 -0.0018 11 6 3.7931 -5.2956 1.2477 12 6 3.7821 -5.2867 -1.2320 13 1 4.1514 -4.5621 -1.9425 14 6 3.9859 -6.6327 -1.4509 15 7 3.5357 -7.5152 -0.5859 16 14 4.9015 -7.2028 -2.9761 17 1 6.2708 -6.6282 -2.9751 18 1 4.9863 -8.6854 -2.9771 19 1 4.1746 -6.7481 -4.1887 20 6 1.8169 -2.6194 -0.0005 21 6 2.2082 -1.2046 0.0059 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6609 2.1266 0.0004 26 1 4.1202 2.1318 0.0001 27 1 5.3723 0.0220 0.0013 28 1 3.2592 -4.9629 2.1378 29 1 3.8559 -6.3838 1.2467 30 1 4.7983 -4.8741 1.2481 31 1 3.6794 -8.4621 -0.7397 32 1 0.8118 -3.0144 -0.0004 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260083116.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:26 Heat of formation + Delta-G solvation = 8.560534 kcal Electronic energy + Delta-G solvation = -15368.527328 eV Core-core repulsion = 12873.775018 eV Total energy + Delta-G solvation = -2494.752310 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.79222 -37.72457 -34.53397 -32.84465 -31.29613 -30.66919 -28.19652 -26.31826 -25.24911 -22.55193 -22.19542 -20.18031 -19.88818 -16.72618 -16.55599 -15.76457 -15.27699 -15.16846 -14.42776 -13.53514 -13.35634 -13.28301 -12.87167 -12.63797 -12.41647 -12.12782 -11.56397 -11.39195 -11.31592 -11.00318 -10.90038 -10.66961 -10.40002 -10.27968 -9.81497 -9.49011 -9.10744 -8.50180 -8.10976 -7.38976 -6.12782 -4.20930 1.36431 1.75537 3.13648 3.28330 3.32050 3.37051 3.46741 4.04810 4.35950 4.92023 5.10797 5.15391 5.19171 5.40698 5.54465 5.71897 5.74161 5.79987 5.92447 6.14130 6.24621 6.35181 6.61839 6.68274 6.69453 6.80507 6.91865 6.93409 7.11413 7.17564 7.46542 7.68378 7.92415 7.97531 8.21194 8.79544 9.44354 10.92688 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.006574 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.496139 B = 4257.870656 C = 4436.639990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.052 4.052 3 C -0.146 4.146 4 C -0.111 4.111 5 C -0.111 4.111 6 C 0.039 3.961 7 O -0.184 6.184 8 C 0.114 3.886 9 C 0.104 3.896 10 H 0.063 0.937 11 C -0.137 4.137 12 C -0.517 4.517 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.264 4.264 21 C -0.113 4.113 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.014 0.986 29 H 0.093 0.907 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 12.647 1.919 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.053 4.053 3 C -0.164 4.164 4 C -0.129 4.129 5 C -0.129 4.129 6 C -0.009 4.009 7 O -0.085 6.085 8 C 0.066 3.934 9 C 0.085 3.915 10 H 0.081 0.919 11 C -0.195 4.195 12 C -0.555 4.555 13 H 0.078 0.922 14 C -0.136 4.136 15 N -0.527 5.527 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.282 4.282 21 C -0.114 4.114 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.139 0.861 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.033 0.967 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.680 12.358 1.953 12.795 hybrid contribution 0.390 -0.280 -0.852 0.978 sum -2.290 12.077 1.102 12.342 Atomic orbital electron populations 1.20713 0.91303 1.02445 1.02146 1.19260 0.95650 0.91013 0.99330 1.20744 0.94043 0.96862 1.04788 1.20690 0.93978 0.96543 1.01671 1.19826 0.99695 0.88081 1.05316 1.19734 0.92981 0.84856 1.03280 1.84085 1.35811 1.13304 1.75263 1.23764 0.83041 0.94494 0.92089 1.17855 0.99093 0.78287 0.96232 0.91886 1.21809 0.98261 1.04842 0.94606 1.20953 1.36792 0.92111 1.05647 0.92216 1.24920 0.95439 0.96432 0.96846 1.69853 1.45755 1.01753 1.35336 0.86525 0.80384 0.77432 0.82976 1.20065 1.21062 1.20098 1.22058 0.99199 0.89831 1.17150 1.19884 0.93058 0.93943 1.04482 0.91302 0.91859 0.91426 0.86146 0.85569 0.85711 0.96723 0.88835 0.94688 0.92545 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.97 36.01 0.36 -1.02 16 2 C -0.05 -0.83 5.90 -104.37 -0.62 -1.45 16 3 C -0.15 -2.02 9.69 -39.58 -0.38 -2.41 16 4 C -0.11 -1.52 10.01 -39.54 -0.40 -1.92 16 5 C -0.11 -1.81 10.06 -39.48 -0.40 -2.21 16 6 C 0.04 0.79 7.41 -38.49 -0.29 0.51 16 7 O -0.18 -4.25 10.58 3.84 0.04 -4.21 16 8 C 0.11 2.65 5.67 -35.80 -0.20 2.45 16 9 C 0.10 2.61 2.69 -92.92 -0.25 2.36 16 10 H 0.06 1.63 8.08 -51.93 -0.42 1.21 16 11 C -0.14 -3.32 8.95 37.16 0.33 -2.99 16 12 C -0.52 -14.23 8.55 -34.44 -0.29 -14.53 16 13 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 16 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.26 -5.45 10.70 -37.62 -0.40 -5.85 16 21 C -0.11 -2.18 6.15 -105.16 -0.65 -2.83 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 24 H 0.07 0.86 7.92 -51.93 -0.41 0.45 16 25 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 26 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 27 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16 LS Contribution 276.69 15.07 4.17 4.17 Total: -1.00 -28.82 276.69 -7.53 -36.35 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -4.07 Total: -0.26 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -3.28 Total: -28.19 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.63 Total: -23.96 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: 0.04 Total: -4.21 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.82 -7.53 -36.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260083116.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.909 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds