Wall clock time and date at job start Mon Mar 30 2020 03:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37756 * 120.19868 * 2 1 4 4 C 1.38722 * 120.27644 * 179.97438 * 3 2 1 5 5 C 1.37862 * 120.68963 * 0.02890 * 4 3 2 6 6 C 1.38881 * 119.95868 * 359.96953 * 5 4 3 7 7 O 1.34832 * 133.42309 * 179.97438 * 6 5 4 8 8 C 1.34450 * 110.89654 * 180.02562 * 7 6 5 9 9 C 1.50704 * 124.91974 * 179.97438 * 8 7 6 10 10 H 1.08991 * 109.47168 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46938 * 60.02353 * 9 8 7 12 12 C 1.50699 * 109.46735 * 300.02549 * 9 8 7 13 13 H 1.07994 * 120.00215 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99317 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00349 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99728 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47249 * 60.00169 * 16 14 12 18 18 H 1.48500 * 109.46892 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46954 * 300.00071 * 16 14 12 20 20 C 1.33996 * 110.16227 * 0.02562 * 8 7 6 21 21 C 1.39379 * 120.20155 * 179.72054 * 2 1 3 22 22 H 1.09002 * 109.47152 * 89.99947 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00047 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00028 * 1 2 3 25 25 H 1.08006 * 119.86349 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.65293 * 179.97438 * 4 3 2 27 27 H 1.07999 * 120.01773 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.46951 * 60.00035 * 11 9 8 29 29 H 1.09000 * 109.47267 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.47344 * 300.00092 * 11 9 8 31 31 H 0.97005 * 119.99888 * 180.02562 * 15 14 12 32 32 H 1.07996 * 126.90523 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1906 0.0000 4 6 3.5872 1.1925 0.0005 5 6 4.2924 0.0079 0.0005 6 6 3.6133 -1.2035 0.0005 7 8 4.0143 -2.4908 0.0000 8 6 2.9577 -3.3223 -0.0002 9 6 3.0440 -4.8269 -0.0013 10 1 2.0388 -5.2484 -0.0018 11 6 3.7931 -5.2956 1.2477 12 6 3.7821 -5.2867 -1.2320 13 1 4.1514 -4.5621 -1.9425 14 6 3.9859 -6.6327 -1.4509 15 7 3.5357 -7.5152 -0.5859 16 14 4.9015 -7.2028 -2.9761 17 1 6.2708 -6.6282 -2.9751 18 1 4.9863 -8.6854 -2.9771 19 1 4.1746 -6.7481 -4.1887 20 6 1.8169 -2.6194 -0.0005 21 6 2.2082 -1.2046 0.0059 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6609 2.1266 0.0004 26 1 4.1202 2.1318 0.0001 27 1 5.3723 0.0220 0.0013 28 1 3.2592 -4.9629 2.1378 29 1 3.8559 -6.3838 1.2467 30 1 4.7983 -4.8741 1.2481 31 1 3.6794 -8.4621 -0.7397 32 1 0.8118 -3.0144 -0.0004 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260083116.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:26 Heat of formation + Delta-G solvation = -6.163420 kcal Electronic energy + Delta-G solvation = -15369.165806 eV Core-core repulsion = 12873.775018 eV Total energy + Delta-G solvation = -2495.390788 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.29950 -39.00327 -36.47237 -34.22526 -33.01862 -32.18885 -29.65370 -27.53151 -27.31409 -24.19624 -23.57738 -21.65890 -21.46286 -18.63462 -17.95126 -17.36942 -16.94251 -16.69581 -15.99732 -14.98694 -14.83296 -14.57975 -14.40715 -14.19097 -13.89295 -13.48895 -13.16427 -13.01345 -12.87282 -12.52231 -12.46422 -12.30515 -12.29300 -11.88262 -11.66298 -11.27650 -10.78244 -10.58387 -9.42503 -8.84925 -8.19776 -6.36124 0.06695 0.47000 1.38948 1.40673 1.48026 1.57665 1.97465 2.38774 2.79389 3.07527 3.61145 3.81928 4.05843 4.25681 4.30166 4.49466 4.52271 4.63620 4.76909 4.82305 4.88147 4.89265 4.94827 5.02093 5.21014 5.38173 5.39620 5.43930 5.56428 5.62154 5.67413 5.88218 5.94146 6.13897 6.44433 6.67074 7.31953 8.84198 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.006574 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.496139 B = 4257.870656 C = 4436.639990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.058 4.058 3 C -0.139 4.139 4 C -0.089 4.089 5 C -0.130 4.130 6 C 0.006 3.994 7 O -0.212 6.212 8 C 0.072 3.928 9 C 0.104 3.896 10 H 0.047 0.953 11 C -0.125 4.125 12 C -0.540 4.540 13 H 0.043 0.957 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.959 3.041 17 H -0.274 1.274 18 H -0.274 1.274 19 H -0.272 1.272 20 C -0.251 4.251 21 C -0.142 4.142 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.059 0.941 25 H 0.165 0.835 26 H 0.172 0.828 27 H 0.139 0.861 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.268 0.732 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 15.517 1.543 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.058 4.058 3 C -0.156 4.156 4 C -0.106 4.106 5 C -0.148 4.148 6 C -0.041 4.041 7 O -0.115 6.115 8 C 0.024 3.976 9 C 0.086 3.914 10 H 0.065 0.935 11 C -0.183 4.183 12 C -0.577 4.577 13 H 0.062 0.938 14 C -0.177 4.177 15 N -0.547 5.547 16 Si 0.784 3.216 17 H -0.199 1.199 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.270 4.270 21 C -0.143 4.143 22 H 0.096 0.904 23 H 0.113 0.887 24 H 0.078 0.922 25 H 0.182 0.818 26 H 0.190 0.810 27 H 0.157 0.843 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.179 15.233 1.585 15.642 hybrid contribution 0.498 -0.949 -0.708 1.284 sum -2.681 14.285 0.877 14.561 Atomic orbital electron populations 1.20793 0.89033 1.03647 1.03087 1.19761 0.97512 0.90377 0.98158 1.21321 0.94337 0.97691 1.02276 1.21302 0.94354 0.97088 0.97890 1.20278 1.00880 0.87623 1.06013 1.20412 0.94232 0.84592 1.04845 1.83973 1.36256 1.14852 1.76380 1.23326 0.84150 0.93828 0.96249 1.17612 0.97764 0.80365 0.95690 0.93535 1.21638 0.97973 1.03332 0.95344 1.21153 1.37640 0.92383 1.06560 0.93820 1.25652 0.96057 0.96340 0.99602 1.69947 1.46217 1.02011 1.36570 0.85595 0.79028 0.77423 0.79566 1.19945 1.19823 1.19700 1.22310 0.98937 0.91071 1.14674 1.20102 0.93178 0.94297 1.06753 0.90358 0.88731 0.92233 0.81779 0.81041 0.84279 0.94857 0.90678 0.95562 0.92233 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.40 9.97 71.24 0.71 -1.69 16 2 C -0.06 -1.68 5.90 -19.70 -0.12 -1.80 16 3 C -0.14 -3.16 9.69 22.27 0.22 -2.95 16 4 C -0.09 -2.05 10.01 22.30 0.22 -1.82 16 5 C -0.13 -4.03 10.06 22.33 0.22 -3.80 16 6 C 0.01 0.24 7.41 22.98 0.17 0.41 16 7 O -0.21 -10.32 10.58 -9.18 -0.10 -10.42 16 8 C 0.07 3.52 5.67 24.72 0.14 3.66 16 9 C 0.10 5.52 2.69 -12.28 -0.03 5.49 16 10 H 0.05 2.55 8.08 -2.39 -0.02 2.54 16 11 C -0.13 -6.34 8.95 71.98 0.64 -5.69 16 12 C -0.54 -31.05 8.55 25.60 0.22 -30.83 16 13 H 0.04 2.58 7.74 -2.91 -0.02 2.55 16 14 C 0.02 1.31 5.30 84.65 0.45 1.76 16 15 N -0.91 -51.53 11.32 21.45 0.24 -51.28 16 16 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 17 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 C -0.25 -10.72 10.70 23.54 0.25 -10.47 16 21 C -0.14 -5.48 6.15 -20.21 -0.12 -5.60 16 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 24 H 0.06 1.40 7.92 -2.38 -0.02 1.38 16 25 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 26 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 27 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 28 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 4.04 6.07 -2.39 -0.01 4.03 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.27 14.33 8.31 -92.70 -0.77 13.55 16 32 H 0.16 6.13 8.06 -2.91 -0.02 6.11 16 Total: -1.00 -65.30 276.69 6.25 -59.05 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.10 Total: 9.94 kcal Atomic # 6 Polarization: -56.30 SS G_CDS: 2.97 Total: -53.33 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.24 Total: -51.28 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.10 Total: -10.42 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -65.30 6.25 -59.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260083116.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.886 kcal (2) G-P(sol) polarization free energy of solvation -65.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds