Wall clock time and date at job start Mon Mar 30 2020 03:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33988 * 124.91808 * 2 1 4 4 C 1.46784 * 106.18334 * 179.97438 * 3 2 1 5 5 C 1.40509 * 105.50256 * 359.97438 * 4 3 2 6 6 C 1.38884 * 119.32400 * 180.02562 * 5 4 3 7 7 C 1.37864 * 119.95372 * 0.25682 * 6 5 4 8 8 C 1.38720 * 120.69206 * 359.48507 * 7 6 5 9 9 C 1.37765 * 120.27325 * 0.51480 * 8 7 6 10 10 C 1.50695 * 120.19668 * 179.72237 * 9 8 7 11 11 C 1.53001 * 109.47276 * 265.02390 * 10 9 8 12 12 C 1.50705 * 109.46900 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00009 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99865 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99945 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00160 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46971 * 60.00121 * 16 14 12 18 18 H 1.48503 * 109.47114 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47029 * 300.00178 * 16 14 12 20 20 O 1.34445 * 124.92073 * 179.97438 * 2 1 3 21 21 H 1.09003 * 109.47285 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46943 * 299.99312 * 1 2 3 23 23 H 1.09002 * 109.47402 * 59.99614 * 1 2 3 24 24 H 1.07997 * 126.90843 * 0.02562 * 3 2 1 25 25 H 1.08002 * 120.02025 * 179.97438 * 6 5 4 26 26 H 1.08002 * 119.64702 * 179.72023 * 7 6 5 27 27 H 1.07993 * 119.86041 * 180.25810 * 8 7 6 28 28 H 1.08997 * 109.47437 * 25.02330 * 10 9 8 29 29 H 1.09000 * 109.47173 * 145.02199 * 10 9 8 30 30 H 1.08994 * 109.47085 * 299.99845 * 11 10 9 31 31 H 1.08996 * 109.47431 * 60.00257 * 11 10 9 32 32 H 0.97001 * 120.00021 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2739 1.0987 0.0000 4 6 3.6640 0.6272 0.0006 5 6 3.5848 -0.7756 0.0016 6 6 4.7554 -1.5230 0.0029 7 6 5.9784 -0.8866 0.0086 8 6 6.0559 0.4984 0.0024 9 6 4.9068 1.2583 0.0010 10 6 4.9930 2.7628 0.0006 11 6 4.8959 3.2797 1.4374 12 6 4.9816 4.7843 1.4368 13 1 5.0935 5.3184 0.5048 14 6 4.9159 5.4790 2.6259 15 7 4.7790 4.8285 3.7608 16 14 5.0227 7.3439 2.6253 17 1 3.9068 7.9033 1.8209 18 1 4.9271 7.8456 4.0197 19 1 6.3184 7.7653 2.0348 20 8 2.2766 -1.1024 0.0005 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.9371 2.1248 0.0004 25 1 4.7076 -2.6020 0.0040 26 1 6.8855 -1.4727 0.0142 27 1 7.0210 0.9829 0.0028 28 1 5.9438 3.0721 -0.4333 29 1 4.1737 3.1735 -0.5894 30 1 3.9451 2.9704 1.8713 31 1 5.7153 2.8690 2.0274 32 1 4.7331 5.3172 4.5974 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260189817.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:03 Heat of formation + Delta-G solvation = 4.999501 kcal Electronic energy + Delta-G solvation = -15153.071229 eV Core-core repulsion = 12658.164502 eV Total energy + Delta-G solvation = -2494.906728 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.09065 -37.81464 -34.13863 -32.89074 -31.76353 -30.72427 -28.84734 -26.75495 -24.82107 -22.47850 -21.60936 -20.88551 -19.68425 -16.75431 -16.42644 -16.17089 -15.92823 -15.04693 -14.47924 -13.79741 -13.36018 -13.09286 -12.97671 -12.74919 -12.54242 -12.38380 -11.91825 -11.78971 -11.38952 -11.17745 -10.89318 -10.70958 -10.42637 -9.88252 -9.72219 -9.37247 -9.08812 -8.34795 -8.16407 -7.56994 -5.99247 -4.02746 1.29000 1.76093 2.68765 2.99143 3.33088 3.37579 3.39882 4.11055 4.45981 4.71864 5.03999 5.20999 5.34321 5.36049 5.40530 5.47201 5.56442 5.63744 5.79295 5.85912 6.05636 6.21698 6.34518 6.56634 6.64192 6.67609 6.80411 6.93166 7.08169 7.14402 7.54090 7.68326 7.82519 8.00589 8.40404 9.04030 9.61080 11.11656 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.027723 B = 0.006683 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.748669 B = 4188.794828 C = 4882.979532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 C -0.186 4.186 4 C -0.127 4.127 5 C 0.051 3.949 6 C -0.132 4.132 7 C -0.088 4.088 8 C -0.148 4.148 9 C -0.006 4.006 10 C -0.080 4.080 11 C 0.032 3.968 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.201 6.201 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.158 0.842 25 H 0.123 0.877 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 -10.804 -7.928 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.038 4.038 3 C -0.205 4.205 4 C -0.128 4.128 5 C 0.004 3.996 6 C -0.151 4.151 7 C -0.106 4.106 8 C -0.166 4.166 9 C -0.006 4.006 10 C -0.117 4.117 11 C -0.005 4.005 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 O -0.104 6.104 21 H 0.093 0.907 22 H 0.106 0.894 23 H 0.104 0.896 24 H 0.176 0.824 25 H 0.141 0.859 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.247 -11.043 -7.730 14.133 hybrid contribution 0.140 1.162 0.227 1.192 sum -4.108 -9.882 -7.503 13.070 Atomic orbital electron populations 1.20352 0.85134 1.03764 1.03800 1.22189 0.93783 0.83828 1.04038 1.22306 0.90730 0.99439 1.08028 1.19777 0.94017 0.92470 1.06539 1.19588 0.82937 0.93734 1.03370 1.19698 0.88206 0.99002 1.08159 1.20830 0.96095 0.94621 0.99095 1.20947 0.98214 0.93305 1.04112 1.19874 0.90261 0.97608 0.92822 1.20842 1.01363 0.87547 1.01974 1.19045 0.97568 0.95311 0.88538 1.21209 1.50340 0.91786 0.92769 0.92638 1.25023 0.95292 0.98412 0.95632 1.69971 1.50091 1.35554 0.97681 0.86655 0.78649 0.85725 0.76959 1.20240 1.21277 1.20205 1.83878 1.15142 1.34134 1.77205 0.90739 0.89424 0.89623 0.82436 0.85872 0.85310 0.85463 0.91981 0.92084 0.96360 0.96456 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.39 36.00 0.37 -0.40 16 2 C 0.01 0.13 7.23 -35.80 -0.26 -0.13 16 3 C -0.19 -3.30 10.83 -37.62 -0.41 -3.71 16 4 C -0.13 -2.48 6.16 -105.16 -0.65 -3.12 16 5 C 0.05 0.91 7.41 -38.49 -0.29 0.62 16 6 C -0.13 -2.04 10.06 -39.48 -0.40 -2.44 16 7 C -0.09 -1.31 10.01 -39.54 -0.40 -1.70 16 8 C -0.15 -2.54 9.67 -39.58 -0.38 -2.92 16 9 C -0.01 -0.11 5.16 -104.37 -0.54 -0.65 16 10 C -0.08 -1.72 5.22 -27.88 -0.15 -1.87 16 11 C 0.03 0.86 4.96 -27.88 -0.14 0.72 16 12 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 16 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 O -0.20 -3.43 10.58 3.84 0.04 -3.39 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.16 2.67 8.06 -52.49 -0.42 2.25 16 25 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 26 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 27 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 28 H 0.06 1.27 8.05 -51.93 -0.42 0.85 16 29 H 0.06 1.28 8.06 -51.93 -0.42 0.86 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 281.50 15.07 4.24 4.24 Total: -1.00 -32.14 281.50 -7.82 -39.96 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.18 Total: -1.83 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -3.63 Total: -29.21 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.74 Total: -26.44 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: 0.04 Total: -3.39 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.14 -7.82 -39.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260189817.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.961 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds