Wall clock time and date at job start Mon Mar 30 2020 03:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33988 * 124.91808 * 2 1 4 4 C 1.46784 * 106.18334 * 179.97438 * 3 2 1 5 5 C 1.40509 * 105.50256 * 359.97438 * 4 3 2 6 6 C 1.38884 * 119.32400 * 180.02562 * 5 4 3 7 7 C 1.37864 * 119.95372 * 0.25682 * 6 5 4 8 8 C 1.38720 * 120.69206 * 359.48507 * 7 6 5 9 9 C 1.37765 * 120.27325 * 0.51480 * 8 7 6 10 10 C 1.50695 * 120.19668 * 179.72237 * 9 8 7 11 11 C 1.53001 * 109.47276 * 265.02390 * 10 9 8 12 12 C 1.50705 * 109.46900 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00009 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99865 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99945 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00160 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46971 * 60.00121 * 16 14 12 18 18 H 1.48503 * 109.47114 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47029 * 300.00178 * 16 14 12 20 20 O 1.34445 * 124.92073 * 179.97438 * 2 1 3 21 21 H 1.09003 * 109.47285 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46943 * 299.99312 * 1 2 3 23 23 H 1.09002 * 109.47402 * 59.99614 * 1 2 3 24 24 H 1.07997 * 126.90843 * 0.02562 * 3 2 1 25 25 H 1.08002 * 120.02025 * 179.97438 * 6 5 4 26 26 H 1.08002 * 119.64702 * 179.72023 * 7 6 5 27 27 H 1.07993 * 119.86041 * 180.25810 * 8 7 6 28 28 H 1.08997 * 109.47437 * 25.02330 * 10 9 8 29 29 H 1.09000 * 109.47173 * 145.02199 * 10 9 8 30 30 H 1.08994 * 109.47085 * 299.99845 * 11 10 9 31 31 H 1.08996 * 109.47431 * 60.00257 * 11 10 9 32 32 H 0.97001 * 120.00021 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2739 1.0987 0.0000 4 6 3.6640 0.6272 0.0006 5 6 3.5848 -0.7756 0.0016 6 6 4.7554 -1.5230 0.0029 7 6 5.9784 -0.8866 0.0086 8 6 6.0559 0.4984 0.0024 9 6 4.9068 1.2583 0.0010 10 6 4.9930 2.7628 0.0006 11 6 4.8959 3.2797 1.4374 12 6 4.9816 4.7843 1.4368 13 1 5.0935 5.3184 0.5048 14 6 4.9159 5.4790 2.6259 15 7 4.7790 4.8285 3.7608 16 14 5.0227 7.3439 2.6253 17 1 3.9068 7.9033 1.8209 18 1 4.9271 7.8456 4.0197 19 1 6.3184 7.7653 2.0348 20 8 2.2766 -1.1024 0.0005 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.9371 2.1248 0.0004 25 1 4.7076 -2.6020 0.0040 26 1 6.8855 -1.4727 0.0142 27 1 7.0210 0.9829 0.0028 28 1 5.9438 3.0721 -0.4333 29 1 4.1737 3.1735 -0.5894 30 1 3.9451 2.9704 1.8713 31 1 5.7153 2.8690 2.0274 32 1 4.7331 5.3172 4.5974 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260189817.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:02 Heat of formation + Delta-G solvation = -12.745584 kcal Electronic energy + Delta-G solvation = -15153.840714 eV Core-core repulsion = 12658.164502 eV Total energy + Delta-G solvation = -2495.676212 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.38476 -39.16720 -35.96275 -34.44669 -33.39417 -31.95414 -30.52583 -28.04150 -26.64574 -23.93390 -23.31437 -22.19039 -21.20278 -18.61554 -17.89013 -17.63314 -17.23170 -16.53513 -16.29064 -15.27610 -14.89862 -14.39231 -14.23456 -14.04123 -13.93264 -13.87768 -13.49659 -13.16385 -12.94208 -12.78700 -12.59226 -12.48686 -11.97418 -11.78493 -11.56689 -11.18456 -10.85721 -10.57239 -9.48966 -8.91194 -8.20965 -6.34227 -0.00163 0.41426 1.38962 1.40307 1.42747 1.50837 1.77135 2.39676 2.76866 3.11239 3.53655 3.73378 4.01038 4.18876 4.26718 4.37977 4.43201 4.45644 4.67214 4.70010 4.78893 4.88520 4.91478 4.95937 5.16173 5.30135 5.38963 5.44876 5.51168 5.53047 5.77042 5.80922 5.82015 6.19280 6.24082 6.81900 7.35324 8.90390 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.027723 B = 0.006683 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.748669 B = 4188.794828 C = 4882.979532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.028 3.972 3 C -0.232 4.232 4 C -0.154 4.154 5 C 0.027 3.973 6 C -0.121 4.121 7 C -0.084 4.084 8 C -0.149 4.149 9 C -0.046 4.046 10 C -0.063 4.063 11 C 0.044 3.956 12 C -0.545 4.545 13 H 0.063 0.937 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.264 1.264 20 O -0.203 6.203 21 H 0.094 0.906 22 H 0.098 0.902 23 H 0.108 0.892 24 H 0.152 0.848 25 H 0.159 0.841 26 H 0.174 0.826 27 H 0.139 0.861 28 H 0.070 0.930 29 H 0.057 0.943 30 H -0.016 1.016 31 H -0.012 1.012 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 -11.551 -8.746 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.019 4.019 3 C -0.251 4.251 4 C -0.154 4.154 5 C -0.020 4.020 6 C -0.139 4.139 7 C -0.101 4.101 8 C -0.167 4.167 9 C -0.046 4.046 10 C -0.100 4.100 11 C 0.007 3.993 12 C -0.583 4.583 13 H 0.081 0.919 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.792 3.208 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.189 1.189 20 O -0.106 6.106 21 H 0.113 0.887 22 H 0.117 0.883 23 H 0.126 0.874 24 H 0.169 0.831 25 H 0.177 0.823 26 H 0.191 0.809 27 H 0.157 0.843 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.003 0.997 31 H 0.007 0.993 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.242 -11.798 -8.567 15.185 hybrid contribution 0.113 1.291 0.487 1.384 sum -4.129 -10.508 -8.081 13.884 Atomic orbital electron populations 1.20618 0.81315 1.05627 1.05366 1.23034 0.95663 0.82700 1.00510 1.22428 0.91010 1.00123 1.11508 1.20110 0.94524 0.93864 1.06941 1.20018 0.83960 0.93440 1.04578 1.20248 0.87342 1.00770 1.05589 1.21294 0.97667 0.93707 0.97465 1.21255 0.97802 0.94734 1.02900 1.19809 0.91715 0.96468 0.96633 1.20521 1.01527 0.89564 0.98432 1.18827 0.94447 0.94822 0.91246 1.21651 1.50382 0.92935 0.93353 0.91854 1.26024 0.94524 1.04168 0.95049 1.70121 1.50946 1.37874 0.98455 0.85458 0.79330 0.78734 0.77279 1.19066 1.20780 1.18918 1.83892 1.15021 1.34582 1.77102 0.88686 0.88319 0.87380 0.83067 0.82309 0.80891 0.84318 0.91165 0.92461 0.99741 0.99313 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.39 71.24 0.74 -0.64 16 2 C 0.03 0.86 7.23 24.72 0.18 1.04 16 3 C -0.23 -8.58 10.83 23.54 0.26 -8.33 16 4 C -0.15 -6.16 6.16 -20.21 -0.12 -6.29 16 5 C 0.03 0.95 7.41 22.98 0.17 1.12 16 6 C -0.12 -3.46 10.06 22.34 0.22 -3.23 16 7 C -0.08 -2.27 10.01 22.30 0.22 -2.04 16 8 C -0.15 -5.04 9.67 22.27 0.22 -4.82 16 9 C -0.05 -1.88 5.16 -19.70 -0.10 -1.98 16 10 C -0.06 -2.84 5.22 29.85 0.16 -2.69 16 11 C 0.04 2.44 4.96 29.85 0.15 2.59 16 12 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 13 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 14 C 0.00 0.01 5.46 84.65 0.46 0.47 16 15 N -0.93 -58.33 13.29 21.45 0.28 -58.05 16 16 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 20 O -0.20 -6.77 10.58 -9.17 -0.10 -6.87 16 21 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 22 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.15 5.55 8.06 -2.91 -0.02 5.53 16 25 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 26 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 27 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 28 H 0.07 2.95 8.05 -2.39 -0.02 2.93 16 29 H 0.06 2.54 8.06 -2.39 -0.02 2.52 16 30 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 31 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 32 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -72.04 281.50 6.09 -65.94 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.10 Total: 8.68 kcal Atomic # 6 Polarization: -59.25 SS G_CDS: 2.78 Total: -56.47 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.28 Total: -58.05 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.10 Total: -6.87 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -72.04 6.09 -65.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260189817.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.198 kcal (2) G-P(sol) polarization free energy of solvation -72.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds