Wall clock time and date at job start Mon Mar 30 2020 03:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39904 * 109.47275 * 2 1 4 4 F 1.39903 * 109.47308 * 239.99981 * 2 1 3 5 5 C 1.53002 * 109.47308 * 119.99950 * 2 1 3 6 6 N 1.46499 * 109.47287 * 180.02562 * 5 2 1 7 7 C 1.35041 * 126.39322 * 264.95635 * 6 5 2 8 8 N 1.30503 * 108.69928 * 180.02562 * 7 6 5 9 9 C 1.34124 * 109.25583 * 0.02562 * 8 7 6 10 10 C 1.34675 * 108.02139 * 359.97438 * 9 8 7 11 11 C 1.50697 * 126.59403 * 179.73770 * 10 9 8 12 12 C 1.50706 * 109.47023 * 85.02341 * 11 10 9 13 13 H 1.08002 * 119.99727 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00032 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99685 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99879 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47231 * 60.00144 * 16 14 12 18 18 H 1.48499 * 109.46722 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47206 * 299.99603 * 16 14 12 20 20 H 1.09005 * 109.47253 * 300.00384 * 1 2 3 21 21 H 1.09002 * 109.46974 * 60.00229 * 1 2 3 22 22 H 1.09002 * 109.47324 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47101 * 59.99664 * 5 2 1 24 24 H 1.09005 * 109.46690 * 300.00010 * 5 2 1 25 25 H 1.07997 * 125.65385 * 0.05440 * 7 6 5 26 26 H 1.07993 * 125.99299 * 180.02562 * 9 8 7 27 27 H 1.08989 * 109.47256 * 205.02277 * 11 10 9 28 28 H 1.09002 * 109.46995 * 325.02869 * 11 10 9 29 29 H 0.97003 * 119.99753 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 7 3.5050 -0.7207 1.2495 7 6 4.3067 -1.7059 0.7909 8 7 5.5498 -1.3461 0.9591 9 6 5.5858 -0.1310 1.5258 10 6 4.3168 0.2780 1.7156 11 6 3.8753 1.5816 2.3293 12 6 3.8491 2.6525 1.2693 13 1 4.1251 2.4131 0.2529 14 6 3.4740 3.9381 1.5972 15 7 3.1394 4.2299 2.8352 16 14 3.4409 5.2653 0.2831 17 1 2.4900 4.8766 -0.7892 18 1 3.0072 6.5502 0.8882 19 1 4.7998 5.4244 -0.2941 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6767 -1.7488 1.2493 24 1 1.6766 -0.2073 2.1392 25 1 3.9742 -2.6370 0.3565 26 1 6.4763 0.4228 1.7839 27 1 2.8776 1.4646 2.7522 28 1 4.5727 1.8670 3.1169 29 1 2.8759 5.1345 3.0660 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260281700.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:23 Heat of formation + Delta-G solvation = -46.260165 kcal Electronic energy + Delta-G solvation = -16754.075157 eV Core-core repulsion = 13735.008865 eV Total energy + Delta-G solvation = -3019.066292 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.48351 -46.42039 -41.28984 -34.33984 -33.32983 -31.31155 -30.41250 -26.64605 -26.43182 -23.02821 -21.81626 -20.67574 -19.22535 -17.15828 -16.93073 -16.61991 -16.01882 -15.38726 -14.49462 -14.11683 -13.76172 -13.40556 -12.96864 -12.89253 -12.69548 -12.50416 -12.35615 -12.22920 -11.92207 -11.87131 -11.33818 -10.89521 -10.78824 -10.68124 -9.95620 -9.47684 -9.17651 -8.91600 -8.39844 -7.42280 -6.02375 -4.02574 2.75143 3.23751 3.35261 3.37915 3.43664 3.92451 3.99864 4.30733 4.45812 4.49049 4.76406 5.03638 5.26199 5.30672 5.33832 5.56398 5.68130 5.81321 5.85748 6.35887 6.56758 6.77650 7.36611 7.57649 7.63395 7.85189 7.94122 8.30161 8.78299 8.98812 9.59457 11.07346 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.023650 B = 0.011985 C = 0.009312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.647408 B = 2335.698330 C = 3006.173407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.264 3.736 3 F -0.153 7.153 4 F -0.205 7.205 5 C 0.074 3.926 6 N -0.463 5.463 7 C 0.148 3.852 8 N -0.493 5.493 9 C -0.062 4.062 10 C 0.047 3.953 11 C 0.086 3.914 12 C -0.491 4.491 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.899 5.899 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 H 0.092 0.908 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.110 0.890 24 H 0.119 0.881 25 H 0.193 0.807 26 H 0.163 0.837 27 H 0.022 0.978 28 H 0.043 0.957 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 -9.344 -2.761 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.227 3.773 3 F -0.134 7.134 4 F -0.186 7.186 5 C -0.051 4.051 6 N -0.149 5.149 7 C -0.132 4.132 8 N -0.211 5.211 9 C -0.207 4.207 10 C -0.066 4.066 11 C 0.048 3.952 12 C -0.529 4.529 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.539 5.539 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.202 1.202 20 H 0.111 0.889 21 H 0.102 0.898 22 H 0.103 0.897 23 H 0.128 0.872 24 H 0.137 0.863 25 H 0.209 0.791 26 H 0.181 0.819 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.546 -9.652 -2.890 12.015 hybrid contribution -0.770 1.277 -0.675 1.637 sum -7.317 -8.375 -3.565 11.678 Atomic orbital electron populations 1.22742 0.91603 1.04780 1.05935 1.21476 0.93582 0.78670 0.83580 1.93390 1.89680 1.33896 1.96408 1.92996 1.90698 1.81261 1.53669 1.22730 0.80101 1.03245 0.99051 1.45125 1.05499 1.16380 1.47900 1.24570 0.85986 0.96023 1.06629 1.70111 1.19169 1.14089 1.17770 1.21870 0.96277 0.94113 1.08410 1.22440 0.90447 0.92586 1.01171 1.17864 0.96824 0.84709 0.95787 1.20914 1.44475 0.92669 0.94858 0.92395 1.24907 0.95437 0.98434 0.95320 1.69933 1.46252 1.20279 1.17427 0.86637 0.78662 0.80778 0.81923 1.20223 1.21368 1.20184 0.88863 0.89766 0.89749 0.87189 0.86303 0.79063 0.81940 0.95988 0.93910 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 9.38 37.15 0.35 -1.78 15 2 C 0.26 4.19 2.25 -26.73 -0.06 4.13 15 3 F -0.15 -3.31 13.39 2.25 0.03 -3.28 15 4 F -0.21 -3.49 16.98 2.25 0.04 -3.45 15 5 C 0.07 1.07 5.45 -4.04 -0.02 1.05 15 6 N -0.46 -8.73 2.64 -113.99 -0.30 -9.03 15 7 C 0.15 2.71 12.56 -90.37 -1.13 1.57 15 8 N -0.49 -10.47 11.25 -14.67 -0.17 -10.63 15 9 C -0.06 -1.38 11.79 -17.81 -0.21 -1.59 15 10 C 0.05 1.06 5.79 -81.60 -0.47 0.58 15 11 C 0.09 2.15 5.02 -29.03 -0.15 2.01 15 12 C -0.49 -13.45 6.71 -34.44 -0.23 -13.68 15 13 H 0.06 1.66 7.38 -52.49 -0.39 1.27 15 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 15 N -0.90 -25.85 13.29 55.43 0.74 -25.11 15 16 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 15 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 15 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 20 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.08 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.11 1.11 8.13 -51.93 -0.42 0.69 15 24 H 0.12 1.69 7.28 -51.93 -0.38 1.31 15 25 H 0.19 2.65 8.06 -52.49 -0.42 2.23 15 26 H 0.16 3.43 8.06 -52.49 -0.42 3.01 15 27 H 0.02 0.56 7.20 -51.93 -0.37 0.18 15 28 H 0.04 1.13 8.14 -51.93 -0.42 0.71 15 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 LS Contribution 259.79 15.07 3.91 3.91 Total: -1.00 -32.56 259.79 -6.02 -38.58 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -3.23 Total: -1.65 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.02 Total: -6.13 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.27 Total: -44.77 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.07 Total: -6.73 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.56 -6.02 -38.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281700.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.677 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds