Wall clock time and date at job start Mon Mar 30 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39904 * 109.47275 * 2 1 4 4 F 1.39903 * 109.47308 * 239.99981 * 2 1 3 5 5 C 1.53002 * 109.47308 * 119.99950 * 2 1 3 6 6 N 1.46499 * 109.47287 * 180.02562 * 5 2 1 7 7 C 1.35041 * 126.39322 * 264.95635 * 6 5 2 8 8 N 1.30503 * 108.69928 * 180.02562 * 7 6 5 9 9 C 1.34124 * 109.25583 * 0.02562 * 8 7 6 10 10 C 1.34675 * 108.02139 * 359.97438 * 9 8 7 11 11 C 1.50697 * 126.59403 * 179.73770 * 10 9 8 12 12 C 1.50706 * 109.47023 * 85.02341 * 11 10 9 13 13 H 1.08002 * 119.99727 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00032 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99685 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99879 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47231 * 60.00144 * 16 14 12 18 18 H 1.48499 * 109.46722 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47206 * 299.99603 * 16 14 12 20 20 H 1.09005 * 109.47253 * 300.00384 * 1 2 3 21 21 H 1.09002 * 109.46974 * 60.00229 * 1 2 3 22 22 H 1.09002 * 109.47324 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47101 * 59.99664 * 5 2 1 24 24 H 1.09005 * 109.46690 * 300.00010 * 5 2 1 25 25 H 1.07997 * 125.65385 * 0.05440 * 7 6 5 26 26 H 1.07993 * 125.99299 * 180.02562 * 9 8 7 27 27 H 1.08989 * 109.47256 * 205.02277 * 11 10 9 28 28 H 1.09002 * 109.46995 * 325.02869 * 11 10 9 29 29 H 0.97003 * 119.99753 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 7 3.5050 -0.7207 1.2495 7 6 4.3067 -1.7059 0.7909 8 7 5.5498 -1.3461 0.9591 9 6 5.5858 -0.1310 1.5258 10 6 4.3168 0.2780 1.7156 11 6 3.8753 1.5816 2.3293 12 6 3.8491 2.6525 1.2693 13 1 4.1251 2.4131 0.2529 14 6 3.4740 3.9381 1.5972 15 7 3.1394 4.2299 2.8352 16 14 3.4409 5.2653 0.2831 17 1 2.4900 4.8766 -0.7892 18 1 3.0072 6.5502 0.8882 19 1 4.7998 5.4244 -0.2941 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6767 -1.7488 1.2493 24 1 1.6766 -0.2073 2.1392 25 1 3.9742 -2.6370 0.3565 26 1 6.4763 0.4228 1.7839 27 1 2.8776 1.4646 2.7522 28 1 4.5727 1.8670 3.1169 29 1 2.8759 5.1345 3.0660 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260281700.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:22 Heat of formation + Delta-G solvation = -65.457300 kcal Electronic energy + Delta-G solvation = -16754.907607 eV Core-core repulsion = 13735.008865 eV Total energy + Delta-G solvation = -3019.898742 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.093 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.80106 -47.80561 -42.84674 -35.70552 -35.35002 -32.67708 -32.13980 -28.41131 -27.71922 -25.02613 -23.03443 -22.20686 -20.78771 -18.74306 -18.34051 -18.21430 -17.57545 -16.71457 -16.47314 -15.65314 -15.27173 -14.76387 -14.53953 -14.29222 -14.13991 -14.03294 -13.80738 -13.52540 -13.26904 -13.17144 -13.08829 -12.71328 -12.62682 -12.18460 -11.91429 -11.56016 -10.86547 -10.53352 -10.40479 -9.12876 -8.14984 -6.21515 1.19829 1.39268 1.40131 1.48867 1.86594 2.27842 2.45695 2.84178 3.15064 3.23754 3.40312 3.63548 3.90987 4.06502 4.16724 4.28972 4.61965 4.63127 4.78768 4.86471 5.02154 5.12736 5.30322 5.74905 5.77279 5.84798 6.19824 6.43121 6.82144 7.19719 7.43115 8.93511 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.023650 B = 0.011985 C = 0.009312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.647408 B = 2335.698330 C = 3006.173407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.249 3.751 3 F -0.195 7.195 4 F -0.213 7.213 5 C 0.067 3.933 6 N -0.463 5.463 7 C 0.174 3.826 8 N -0.524 5.524 9 C -0.075 4.075 10 C 0.020 3.980 11 C 0.101 3.899 12 C -0.491 4.491 13 H 0.040 0.960 14 C 0.015 3.985 15 N -0.927 5.927 16 Si 0.946 3.054 17 H -0.275 1.275 18 H -0.278 1.278 19 H -0.275 1.275 20 H 0.098 0.902 21 H 0.081 0.919 22 H 0.124 0.876 23 H 0.167 0.833 24 H 0.119 0.881 25 H 0.243 0.757 26 H 0.159 0.841 27 H 0.014 0.986 28 H 0.018 0.982 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.559 -10.882 -3.606 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.212 3.788 3 F -0.176 7.176 4 F -0.194 7.194 5 C -0.056 4.056 6 N -0.147 5.147 7 C -0.108 4.108 8 N -0.242 5.242 9 C -0.220 4.220 10 C -0.095 4.095 11 C 0.063 3.937 12 C -0.530 4.530 13 H 0.058 0.942 14 C -0.183 4.183 15 N -0.568 5.568 16 Si 0.772 3.228 17 H -0.200 1.200 18 H -0.203 1.203 19 H -0.201 1.201 20 H 0.117 0.883 21 H 0.100 0.900 22 H 0.143 0.857 23 H 0.184 0.816 24 H 0.137 0.863 25 H 0.259 0.741 26 H 0.176 0.824 27 H 0.032 0.968 28 H 0.036 0.964 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.020 -11.186 -3.735 14.262 hybrid contribution -0.335 1.635 -0.443 1.727 sum -8.355 -9.551 -4.178 13.360 Atomic orbital electron populations 1.22749 0.87570 1.07524 1.06157 1.22153 0.96393 0.76660 0.83633 1.93289 1.90541 1.37196 1.96611 1.92972 1.91112 1.81132 1.54226 1.23187 0.77462 1.06506 0.98428 1.45277 1.07255 1.15255 1.46924 1.25546 0.85077 0.96607 1.03546 1.70113 1.21152 1.13712 1.19262 1.21965 0.96364 0.94942 1.08705 1.21949 0.91280 0.92918 1.03322 1.17485 0.95610 0.85958 0.94637 1.20977 1.43934 0.93622 0.94429 0.94184 1.25571 0.95294 1.00317 0.97090 1.70017 1.47140 1.20816 1.18802 0.85780 0.78545 0.78744 0.79695 1.20024 1.20301 1.20094 0.88281 0.89955 0.85741 0.81559 0.86316 0.74136 0.82378 0.96764 0.96412 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.44 9.38 71.98 0.68 -2.76 15 2 C 0.25 7.34 2.25 30.59 0.07 7.41 15 3 F -0.20 -8.42 13.39 44.97 0.60 -7.82 15 4 F -0.21 -6.72 16.98 44.97 0.76 -5.96 15 5 C 0.07 1.76 5.45 86.38 0.47 2.23 15 6 N -0.46 -16.55 2.64 -514.57 -1.36 -17.90 15 7 C 0.17 5.82 12.56 180.26 2.26 8.08 15 8 N -0.52 -21.58 11.25 -200.32 -2.25 -23.84 15 9 C -0.08 -3.39 11.79 83.53 0.98 -2.40 15 10 C 0.02 0.90 5.79 40.95 0.24 1.14 15 11 C 0.10 5.21 5.02 29.10 0.15 5.36 15 12 C -0.49 -27.55 6.71 25.60 0.17 -27.38 15 13 H 0.04 2.35 7.38 -2.91 -0.02 2.33 15 14 C 0.02 0.86 5.46 84.66 0.46 1.32 15 15 N -0.93 -54.02 13.29 21.45 0.28 -53.74 15 16 Si 0.95 45.05 29.54 68.60 2.03 47.08 15 17 H -0.27 -12.91 7.11 99.48 0.71 -12.20 15 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 15 20 H 0.10 1.77 8.14 -2.38 -0.02 1.75 15 21 H 0.08 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.12 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.17 2.42 8.13 -2.39 -0.02 2.40 15 24 H 0.12 3.14 7.28 -2.38 -0.02 3.12 15 25 H 0.24 5.37 8.06 -2.91 -0.02 5.35 15 26 H 0.16 6.96 8.06 -2.91 -0.02 6.93 15 27 H 0.01 0.74 7.20 -2.39 -0.02 0.72 15 28 H 0.02 0.98 8.14 -2.39 -0.02 0.96 15 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 15 Total: -1.00 -72.07 259.79 6.70 -65.37 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 1.15 Total: 3.83 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.48 Total: -7.02 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -3.33 Total: -95.48 kcal Atomic # 9 Polarization: -15.15 SS G_CDS: 1.37 Total: -13.78 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -72.07 6.70 -65.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281700.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.088 kcal (2) G-P(sol) polarization free energy of solvation -72.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds