Wall clock time and date at job start Mon Mar 30 2020 03:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 N 1.46896 * 109.47239 * 59.99971 * 9 7 2 12 12 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.39767 * 119.60014 * 125.00121 * 12 9 7 14 14 N 1.31431 * 120.72694 * 179.97438 * 13 12 9 15 15 C 1.33508 * 119.50834 * 0.02562 * 14 13 12 16 16 C 1.40705 * 122.04184 * 180.02562 * 15 14 13 17 17 C 1.36169 * 118.75988 * 179.97438 * 16 15 14 18 18 N 1.32568 * 121.86309 * 0.02562 * 17 16 15 19 19 C 1.31184 * 122.73790 * 359.97438 * 18 17 16 20 20 C 1.40592 * 119.95325 * 359.97438 * 19 18 17 21 21 N 1.31359 * 119.59955 * 304.72227 * 12 9 7 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.00900 * 111.00550 * 59.99964 * 11 9 7 24 24 H 1.00896 * 111.00310 * 183.95550 * 11 9 7 25 25 H 1.07998 * 119.63660 * 359.96974 * 13 12 9 26 26 H 1.08000 * 120.62110 * 359.96455 * 16 15 14 27 27 H 1.08007 * 119.06741 * 179.97438 * 17 16 15 28 28 H 1.08002 * 120.02459 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.1490 -4.6224 0.9960 14 7 2.9913 -5.6311 1.0169 15 6 3.9342 -5.7200 0.0759 16 6 4.8626 -6.7769 0.0470 17 6 5.7962 -6.8019 -0.9440 18 7 5.8525 -5.8611 -1.8763 19 6 5.0207 -4.8474 -1.9123 20 6 4.0171 -4.7277 -0.9350 21 7 3.1463 -3.7151 -0.9382 22 1 -0.4850 0.8401 0.0004 23 1 0.9651 -2.5260 -2.0381 24 1 -0.1572 -3.4138 -1.1907 25 1 1.3857 -4.5481 1.7565 26 1 4.8354 -7.5537 0.7969 27 1 6.5116 -7.6107 -0.9706 28 1 5.1062 -4.1057 -2.6927 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260449231.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:34 Heat of formation + Delta-G solvation = 58.597031 kcal Electronic energy + Delta-G solvation = -15098.358053 eV Core-core repulsion = 12534.527897 eV Total energy + Delta-G solvation = -2563.830156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.66404 -39.70593 -36.84643 -35.43349 -33.61468 -32.62132 -31.41268 -28.30050 -26.94691 -25.72279 -23.93610 -22.90548 -19.90032 -19.44485 -18.25296 -18.15207 -16.61754 -16.36435 -16.23115 -15.97036 -15.57455 -15.39345 -14.68672 -14.52637 -13.93600 -13.40173 -13.26092 -12.97115 -12.77250 -12.70876 -12.56251 -11.97721 -11.29461 -11.02645 -10.55363 -10.48728 -10.17354 -9.75197 -8.96361 -7.99035 -6.17342 -1.00023 -0.57541 0.76086 1.45383 1.47127 1.53541 1.86035 2.48271 2.90817 2.95074 2.99465 3.11253 3.27681 3.40838 3.76295 3.81448 4.11958 4.30255 4.41257 4.49125 4.65783 4.73237 5.13459 5.26127 5.47790 5.76247 6.06893 6.15939 6.57567 6.61791 6.79712 7.01468 7.20434 7.52991 9.04629 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.037490 B = 0.007242 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.679087 B = 3865.280932 C = 4212.307506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.043 3.957 3 Si 0.943 3.057 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.040 0.960 9 C 0.274 3.726 10 H 0.051 0.949 11 N -0.808 5.808 12 C 0.089 3.911 13 C 0.103 3.897 14 N -0.440 5.440 15 C 0.066 3.934 16 C -0.129 4.129 17 C 0.085 3.915 18 N -0.481 5.481 19 C 0.170 3.830 20 C -0.001 4.001 21 N -0.416 5.416 22 H 0.257 0.743 23 H 0.326 0.674 24 H 0.313 0.687 25 H 0.201 0.799 26 H 0.172 0.828 27 H 0.204 0.796 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.308 -12.115 -0.078 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.162 4.162 3 Si 0.769 3.231 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.058 0.942 9 C 0.163 3.837 10 H 0.068 0.932 11 N -0.334 5.334 12 C -0.069 4.069 13 C -0.075 4.075 14 N -0.154 5.154 15 C -0.063 4.063 16 C -0.149 4.149 17 C -0.058 4.058 18 N -0.190 5.190 19 C -0.004 4.004 20 C -0.128 4.128 21 N -0.132 5.132 22 H 0.067 0.933 23 H 0.138 0.862 24 H 0.124 0.876 25 H 0.217 0.783 26 H 0.189 0.811 27 H 0.221 0.779 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.675 -11.666 -0.483 13.973 hybrid contribution 0.064 0.374 0.483 0.614 sum 7.739 -11.293 0.000 13.690 Atomic orbital electron populations 1.70163 1.06627 1.26603 1.47542 1.25511 0.95392 1.01276 0.93994 0.85887 0.78583 0.80221 0.78372 1.20442 1.20803 1.20095 1.20908 0.91740 0.90735 1.54070 0.94206 1.18036 0.86481 0.87575 0.91603 0.93177 1.59089 1.27630 1.42576 1.04125 1.24641 0.94628 0.97537 0.90097 1.24575 0.96647 0.88734 0.97508 1.68758 1.02726 1.22059 1.21809 1.20142 0.96455 0.96771 0.92917 1.22012 0.93942 0.97540 1.01441 1.22947 0.97096 0.96939 0.88833 1.67641 1.24083 1.02269 1.25039 1.23305 0.87157 0.94984 0.94973 1.21129 0.98990 0.93924 0.98708 1.68550 1.01549 1.18997 1.24132 0.93340 0.86164 0.87619 0.78278 0.81072 0.77904 0.79983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.87 12.77 21.45 0.27 -48.59 15 2 C 0.04 2.30 5.39 84.66 0.46 2.76 15 3 Si 0.94 43.20 29.54 68.60 2.03 45.22 15 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 15 7 C -0.54 -28.51 8.53 25.60 0.22 -28.29 15 8 H 0.04 2.20 7.68 -2.91 -0.02 2.18 15 9 C 0.27 12.74 2.93 43.43 0.13 12.87 15 10 H 0.05 2.41 7.87 -2.39 -0.02 2.40 15 11 N -0.81 -36.31 8.53 -174.95 -1.49 -37.80 15 12 C 0.09 3.62 5.69 43.00 0.24 3.87 15 13 C 0.10 3.56 10.83 85.12 0.92 4.49 15 14 N -0.44 -14.79 10.50 -187.91 -1.97 -16.77 15 15 C 0.07 2.15 6.61 40.40 0.27 2.41 15 16 C -0.13 -3.11 10.08 22.39 0.23 -2.88 15 17 C 0.09 1.83 11.06 84.10 0.93 2.76 15 18 N -0.48 -12.85 10.30 -195.46 -2.01 -14.86 15 19 C 0.17 5.14 11.26 85.36 0.96 6.10 15 20 C 0.00 -0.02 6.61 40.36 0.27 0.24 15 21 N -0.42 -16.93 10.02 -176.17 -1.76 -18.70 15 22 H 0.26 13.86 8.31 -92.71 -0.77 13.09 15 23 H 0.33 14.77 8.91 -89.69 -0.80 13.97 15 24 H 0.31 12.22 9.06 -89.70 -0.81 11.40 15 25 H 0.20 5.63 7.94 -2.91 -0.02 5.61 15 26 H 0.17 3.11 8.06 -2.91 -0.02 3.08 15 27 H 0.20 2.48 8.06 -2.91 -0.02 2.46 15 28 H 0.18 4.95 8.06 -2.91 -0.02 4.92 15 Total: -1.00 -62.99 255.90 -0.72 -63.71 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.40 Total: 23.45 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 4.62 Total: 4.33 kcal Atomic # 7 Polarization: -129.75 SS G_CDS: -6.97 Total: -136.72 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -62.99 -0.72 -63.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260449231.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.310 kcal (2) G-P(sol) polarization free energy of solvation -62.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds