Wall clock time and date at job start Mon Mar 30 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00266 * 2 1 4 4 H 1.48501 * 109.47357 * 270.00252 * 3 2 1 5 5 H 1.48506 * 109.47165 * 29.99903 * 3 2 1 6 6 H 1.48496 * 109.47529 * 149.99779 * 3 2 1 7 7 C 1.37878 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00085 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47354 * 59.99523 * 9 7 2 11 11 N 1.46899 * 109.46800 * 299.99675 * 9 7 2 12 12 C 1.50706 * 109.47092 * 180.02562 * 9 7 2 13 13 C 1.39770 * 119.59701 * 124.72546 * 12 9 7 14 14 N 1.31438 * 120.71616 * 180.25091 * 13 12 9 15 15 C 1.33499 * 119.51110 * 0.04442 * 14 13 12 16 16 C 1.40711 * 122.03381 * 179.97438 * 15 14 13 17 17 C 1.36166 * 118.75777 * 180.02562 * 16 15 14 18 18 N 1.32563 * 121.86624 * 359.97438 * 17 16 15 19 19 C 1.31191 * 122.73645 * 0.02562 * 18 17 16 20 20 C 1.40597 * 119.95245 * 359.97438 * 19 18 17 21 21 N 1.31364 * 119.59440 * 304.99497 * 12 9 7 22 22 H 0.96997 * 119.99981 * 359.97438 * 1 2 3 23 23 H 1.00905 * 110.99933 * 176.05214 * 11 9 7 24 24 H 1.00896 * 111.00250 * 299.99639 * 11 9 7 25 25 H 1.07994 * 119.64221 * 0.27132 * 13 12 9 26 26 H 1.07998 * 120.62186 * 359.97265 * 16 15 14 27 27 H 1.08007 * 119.06502 * 180.02562 * 17 16 15 28 28 H 1.07998 * 120.02039 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 7 0.4060 -2.5777 1.1974 12 6 2.2303 -3.6446 -0.0015 13 6 2.1519 -4.6197 0.9969 14 7 2.9978 -5.6254 1.0210 15 6 3.9416 -5.7135 0.0810 16 6 4.8744 -6.7667 0.0564 17 6 5.8094 -6.7907 -0.9332 18 7 5.8626 -5.8530 -1.8687 19 6 5.0266 -4.8427 -1.9088 20 6 4.0219 -4.7238 -0.9325 21 7 3.1505 -3.7116 -0.9365 22 1 -0.4850 0.8400 0.0004 23 1 -0.1579 -3.4144 1.1882 24 1 0.9637 -2.5270 2.0367 25 1 1.3878 -4.5461 1.7565 26 1 4.8497 -7.5411 0.8088 27 1 6.5275 -7.5971 -0.9571 28 1 5.1102 -4.1029 -2.6912 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260449235.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:36 Heat of formation + Delta-G solvation = 86.456256 kcal Electronic energy + Delta-G solvation = -15095.578490 eV Core-core repulsion = 12532.956400 eV Total energy + Delta-G solvation = -2562.622090 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.36902 -38.48510 -35.24345 -34.18030 -31.97898 -31.20725 -30.02907 -26.51963 -25.30894 -24.34120 -22.59520 -21.50938 -18.51243 -17.85143 -16.93579 -16.62604 -15.17829 -14.96797 -14.81447 -14.44613 -14.36236 -14.18495 -12.97985 -12.83820 -12.57186 -12.13214 -11.84119 -11.37293 -11.20593 -10.88508 -10.76012 -10.11399 -9.74711 -9.54574 -9.10770 -8.75073 -8.57061 -8.34080 -7.45286 -5.98419 -4.12620 0.25728 0.73782 2.06568 3.10195 3.31186 3.37913 3.41389 4.14617 4.22672 4.27042 4.39508 4.44913 4.52148 4.93938 5.09089 5.20790 5.34251 5.54193 5.64154 5.77077 5.90380 6.01476 6.37291 6.69806 7.11574 7.47197 7.79047 7.82805 7.92712 8.13831 8.40177 8.71342 8.96230 9.55515 11.06357 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.036837 B = 0.007387 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.919384 B = 3789.431358 C = 4334.565556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.084 3.916 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.268 3.732 10 H 0.071 0.929 11 N -0.806 5.806 12 C 0.113 3.887 13 C 0.089 3.911 14 N -0.434 5.434 15 C 0.076 3.924 16 C -0.128 4.128 17 C 0.071 3.929 18 N -0.479 5.479 19 C 0.175 3.825 20 C 0.027 3.973 21 N -0.397 5.397 22 H 0.258 0.742 23 H 0.302 0.698 24 H 0.324 0.676 25 H 0.173 0.827 26 H 0.142 0.858 27 H 0.159 0.841 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.871 -10.451 0.484 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.156 3.844 10 H 0.088 0.912 11 N -0.333 5.333 12 C -0.045 4.045 13 C -0.089 4.089 14 N -0.148 5.148 15 C -0.053 4.053 16 C -0.149 4.149 17 C -0.073 4.073 18 N -0.188 5.188 19 C 0.001 3.999 20 C -0.100 4.100 21 N -0.113 5.113 22 H 0.068 0.932 23 H 0.115 0.885 24 H 0.137 0.863 25 H 0.190 0.810 26 H 0.160 0.840 27 H 0.176 0.824 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.240 -10.004 -0.429 11.798 hybrid contribution 0.330 0.055 1.041 1.094 sum 6.570 -9.949 0.612 11.938 Atomic orbital electron populations 1.70079 1.05653 1.26081 1.46252 1.24912 0.94717 0.98691 0.93975 0.86644 0.79843 0.83525 0.78160 1.20561 1.21215 1.20078 1.20656 0.92227 0.88474 1.54788 0.92464 1.18319 0.86642 0.87779 0.91648 0.91190 1.59188 1.27639 1.42220 1.04296 1.25168 0.94500 0.96483 0.88333 1.24227 0.96550 0.89903 0.98241 1.68670 1.02390 1.21975 1.21769 1.19638 0.96056 0.96195 0.93395 1.21649 0.94809 0.97960 1.00472 1.22190 0.97408 0.97110 0.90557 1.67530 1.24645 1.02317 1.24332 1.23148 0.87370 0.94240 0.95183 1.20889 0.98298 0.93697 0.97142 1.68770 1.01248 1.17852 1.23413 0.93201 0.88544 0.86324 0.81044 0.84002 0.82403 0.80842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.34 12.77 55.43 0.71 -22.63 15 2 C 0.08 2.25 5.39 -17.82 -0.10 2.15 15 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 15 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.52 -13.66 8.52 -34.44 -0.29 -13.95 15 8 H 0.06 1.55 7.68 -52.48 -0.40 1.15 15 9 C 0.27 6.14 3.10 -70.01 -0.22 5.92 15 10 H 0.07 1.78 8.14 -51.93 -0.42 1.36 15 11 N -0.81 -16.59 7.83 -6.65 -0.05 -16.64 15 12 C 0.11 2.30 6.13 -82.22 -0.50 1.80 15 13 C 0.09 1.56 10.20 -17.15 -0.17 1.39 15 14 N -0.43 -7.66 10.50 -10.75 -0.11 -7.78 15 15 C 0.08 1.32 6.61 -84.81 -0.56 0.76 15 16 C -0.13 -1.77 10.08 -39.39 -0.40 -2.17 15 17 C 0.07 0.91 11.06 -17.98 -0.20 0.71 15 18 N -0.48 -7.11 10.30 -13.13 -0.14 -7.24 15 19 C 0.18 2.80 11.26 -16.94 -0.19 2.61 15 20 C 0.03 0.50 6.61 -84.83 -0.56 -0.06 15 21 N -0.40 -8.26 10.08 -7.03 -0.07 -8.33 15 22 H 0.26 6.85 8.31 -40.82 -0.34 6.51 15 23 H 0.30 5.23 8.09 -39.29 -0.32 4.91 15 24 H 0.32 6.27 8.25 -39.29 -0.32 5.95 15 25 H 0.17 2.51 6.16 -52.49 -0.32 2.18 15 26 H 0.14 1.61 8.06 -52.49 -0.42 1.18 15 27 H 0.16 1.43 8.06 -52.48 -0.42 1.00 15 28 H 0.17 2.43 8.06 -52.49 -0.42 2.00 15 LS Contribution 252.08 15.07 3.80 3.80 Total: -1.00 -29.78 252.08 -6.27 -36.05 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -2.19 Total: 7.82 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -3.19 Total: -0.84 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.34 Total: -62.62 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.78 -6.27 -36.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260449235.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.511 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds