Wall clock time and date at job start Mon Mar 30 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00266 * 2 1 4 4 H 1.48501 * 109.47357 * 270.00252 * 3 2 1 5 5 H 1.48506 * 109.47165 * 29.99903 * 3 2 1 6 6 H 1.48496 * 109.47529 * 149.99779 * 3 2 1 7 7 C 1.37878 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00085 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47354 * 59.99523 * 9 7 2 11 11 N 1.46899 * 109.46800 * 299.99675 * 9 7 2 12 12 C 1.50706 * 109.47092 * 180.02562 * 9 7 2 13 13 C 1.39770 * 119.59701 * 124.72546 * 12 9 7 14 14 N 1.31438 * 120.71616 * 180.25091 * 13 12 9 15 15 C 1.33499 * 119.51110 * 0.04442 * 14 13 12 16 16 C 1.40711 * 122.03381 * 179.97438 * 15 14 13 17 17 C 1.36166 * 118.75777 * 180.02562 * 16 15 14 18 18 N 1.32563 * 121.86624 * 359.97438 * 17 16 15 19 19 C 1.31191 * 122.73645 * 0.02562 * 18 17 16 20 20 C 1.40597 * 119.95245 * 359.97438 * 19 18 17 21 21 N 1.31364 * 119.59440 * 304.99497 * 12 9 7 22 22 H 0.96997 * 119.99981 * 359.97438 * 1 2 3 23 23 H 1.00905 * 110.99933 * 176.05214 * 11 9 7 24 24 H 1.00896 * 111.00250 * 299.99639 * 11 9 7 25 25 H 1.07994 * 119.64221 * 0.27132 * 13 12 9 26 26 H 1.07998 * 120.62186 * 359.97265 * 16 15 14 27 27 H 1.08007 * 119.06502 * 180.02562 * 17 16 15 28 28 H 1.07998 * 120.02039 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 7 0.4060 -2.5777 1.1974 12 6 2.2303 -3.6446 -0.0015 13 6 2.1519 -4.6197 0.9969 14 7 2.9978 -5.6254 1.0210 15 6 3.9416 -5.7135 0.0810 16 6 4.8744 -6.7667 0.0564 17 6 5.8094 -6.7907 -0.9332 18 7 5.8626 -5.8530 -1.8687 19 6 5.0266 -4.8427 -1.9088 20 6 4.0219 -4.7238 -0.9325 21 7 3.1505 -3.7116 -0.9365 22 1 -0.4850 0.8400 0.0004 23 1 -0.1579 -3.4144 1.1882 24 1 0.9637 -2.5270 2.0367 25 1 1.3878 -4.5461 1.7565 26 1 4.8497 -7.5411 0.8088 27 1 6.5275 -7.5971 -0.9571 28 1 5.1102 -4.1029 -2.6912 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260449235.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:36 Heat of formation + Delta-G solvation = 63.303084 kcal Electronic energy + Delta-G solvation = -15096.582487 eV Core-core repulsion = 12532.956400 eV Total energy + Delta-G solvation = -2563.626087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.69852 -39.76518 -36.83700 -35.66470 -33.82525 -32.48989 -31.41396 -28.33724 -26.69310 -25.86090 -23.86209 -23.16139 -19.81643 -19.23944 -18.54326 -18.26307 -16.67758 -16.51150 -16.27727 -16.00924 -15.71972 -15.43673 -14.50701 -14.32686 -14.12852 -13.55008 -13.32625 -12.92745 -12.79644 -12.70711 -12.52063 -12.00097 -11.38295 -11.01377 -10.60637 -10.43022 -10.15802 -9.70373 -9.08258 -8.00309 -6.19373 -1.02093 -0.59559 0.74366 1.44466 1.46467 1.54565 1.84061 2.47468 2.89011 2.91761 2.96488 3.08194 3.25721 3.40581 3.71452 3.75051 4.08011 4.23821 4.32839 4.47598 4.66296 4.72027 5.09768 5.26627 5.44356 5.75059 6.02298 6.14441 6.47043 6.66301 6.81327 7.00616 7.17959 7.51222 9.03500 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.036837 B = 0.007387 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.919384 B = 3789.431358 C = 4334.565556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.042 3.958 3 Si 0.947 3.053 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.041 0.959 9 C 0.277 3.723 10 H 0.035 0.965 11 N -0.812 5.812 12 C 0.092 3.908 13 C 0.094 3.906 14 N -0.433 5.433 15 C 0.061 3.939 16 C -0.126 4.126 17 C 0.085 3.915 18 N -0.479 5.479 19 C 0.169 3.831 20 C 0.002 3.998 21 N -0.423 5.423 22 H 0.258 0.742 23 H 0.323 0.677 24 H 0.332 0.668 25 H 0.198 0.802 26 H 0.173 0.827 27 H 0.206 0.794 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.367 -12.065 1.065 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.163 4.163 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.059 0.941 9 C 0.165 3.835 10 H 0.053 0.947 11 N -0.342 5.342 12 C -0.066 4.066 13 C -0.084 4.084 14 N -0.147 5.147 15 C -0.067 4.067 16 C -0.147 4.147 17 C -0.059 4.059 18 N -0.188 5.188 19 C -0.006 4.006 20 C -0.126 4.126 21 N -0.140 5.140 22 H 0.067 0.933 23 H 0.137 0.863 24 H 0.146 0.854 25 H 0.215 0.785 26 H 0.191 0.809 27 H 0.222 0.778 28 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.741 -11.627 0.151 13.969 hybrid contribution 0.002 0.385 0.807 0.894 sum 7.743 -11.241 0.958 13.684 Atomic orbital electron populations 1.70172 1.06655 1.26607 1.47486 1.25530 0.95433 1.01374 0.93927 0.85770 0.78616 0.80320 0.77999 1.20444 1.20669 1.20202 1.20853 0.91682 0.90360 1.54261 0.94110 1.17811 0.86702 0.87839 0.91183 0.94720 1.58900 1.27750 1.43785 1.03743 1.24726 0.94846 0.97028 0.90012 1.24386 0.97088 0.89084 0.97842 1.68753 1.02501 1.21631 1.21829 1.20152 0.96634 0.96931 0.92962 1.22019 0.93749 0.97466 1.01463 1.22965 0.97172 0.96938 0.88807 1.67646 1.23979 1.02276 1.24937 1.23320 0.87097 0.95062 0.95074 1.21175 0.98837 0.93863 0.98679 1.68585 1.01948 1.19372 1.24094 0.93288 0.86304 0.85427 0.78530 0.80927 0.77779 0.79918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.93 12.77 21.45 0.27 -48.65 15 2 C 0.04 2.26 5.39 84.66 0.46 2.71 15 3 Si 0.95 43.29 29.54 68.60 2.03 45.31 15 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 15 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 7 C -0.53 -28.54 8.52 25.60 0.22 -28.32 15 8 H 0.04 2.27 7.68 -2.91 -0.02 2.25 15 9 C 0.28 13.07 3.10 43.42 0.13 13.20 15 10 H 0.04 1.87 8.14 -2.39 -0.02 1.85 15 11 N -0.81 -33.61 7.83 -174.95 -1.37 -34.98 15 12 C 0.09 3.82 6.13 43.00 0.26 4.09 15 13 C 0.09 3.23 10.20 85.12 0.87 4.10 15 14 N -0.43 -14.62 10.50 -187.91 -1.97 -16.60 15 15 C 0.06 2.04 6.61 40.40 0.27 2.31 15 16 C -0.13 -3.06 10.08 22.39 0.23 -2.83 15 17 C 0.08 1.82 11.06 84.10 0.93 2.75 15 18 N -0.48 -12.94 10.30 -195.46 -2.01 -14.96 15 19 C 0.17 5.21 11.26 85.36 0.96 6.17 15 20 C 0.00 0.06 6.61 40.36 0.27 0.32 15 21 N -0.42 -18.02 10.08 -176.17 -1.78 -19.80 15 22 H 0.26 13.84 8.31 -92.71 -0.77 13.07 15 23 H 0.32 11.07 8.09 -89.69 -0.73 10.34 15 24 H 0.33 12.77 8.25 -89.70 -0.74 12.03 15 25 H 0.20 5.50 6.16 -2.91 -0.02 5.48 15 26 H 0.17 3.10 8.06 -2.91 -0.02 3.08 15 27 H 0.21 2.48 8.06 -2.91 -0.02 2.46 15 28 H 0.18 5.08 8.06 -2.91 -0.02 5.05 15 Total: -1.00 -64.65 252.08 -0.48 -65.13 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.25 Total: 20.03 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.59 Total: 4.51 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -6.86 Total: -134.98 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -64.65 -0.48 -65.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260449235.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.437 kcal (2) G-P(sol) polarization free energy of solvation -64.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds