Wall clock time and date at job start Mon Mar 30 2020 03:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39900 * 109.46764 * 2 1 4 4 F 1.39897 * 109.47129 * 119.99978 * 2 1 3 5 5 C 1.52997 * 109.47127 * 240.00353 * 2 1 3 6 6 N 1.46496 * 109.47294 * 179.97438 * 5 2 1 7 7 C 1.34948 * 126.03777 * 124.99918 * 6 5 2 8 8 C 1.35325 * 107.74538 * 179.97438 * 7 6 5 9 9 C 1.50697 * 126.04020 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47141 * 89.99886 * 9 8 7 11 11 H 1.08001 * 119.99905 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99839 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00178 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99866 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47009 * 60.00090 * 14 12 10 16 16 H 1.48496 * 109.46935 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47222 * 300.00173 * 14 12 10 18 18 C 1.39875 * 107.91725 * 359.97438 * 8 7 6 19 19 N 1.30838 * 108.20344 * 359.74614 * 18 8 7 20 20 H 1.09001 * 109.46801 * 59.99919 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99807 * 1 2 3 23 23 H 1.09001 * 109.47289 * 299.99953 * 5 2 1 24 24 H 1.09004 * 109.47261 * 59.99697 * 5 2 1 25 25 H 1.07991 * 126.13073 * 359.95527 * 7 6 5 26 26 H 1.09003 * 109.46893 * 209.99882 * 9 8 7 27 27 H 1.09007 * 109.46934 * 329.99592 * 9 8 7 28 28 H 0.97000 * 120.00060 * 180.02562 * 13 12 10 29 29 H 1.07994 * 125.89260 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0401 -0.7212 -1.2493 6 7 3.5050 -0.7206 -1.2496 7 6 4.2993 -1.8075 -1.3448 8 6 5.5840 -1.3838 -1.3087 9 6 6.8086 -2.2588 -1.3851 10 6 7.2161 -2.4277 -2.8262 11 1 6.6451 -1.9497 -3.6084 12 6 8.3172 -3.1935 -3.1459 13 7 9.0122 -3.7760 -2.1934 14 14 8.8219 -3.4035 -4.9322 15 1 9.1263 -2.0742 -5.5201 16 1 10.0287 -4.2656 -5.0074 17 1 7.7124 -4.0370 -5.6888 18 6 5.5744 0.0097 -1.1879 19 7 4.3287 0.4088 -1.1582 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6767 -1.7488 -1.2493 24 1 1.6767 -0.2073 -2.1393 25 1 3.9689 -2.8318 -1.4335 26 1 7.6228 -1.7935 -0.8294 27 1 6.5854 -3.2346 -0.9538 28 1 9.7870 -4.3144 -2.4183 29 1 6.4449 0.6464 -1.1327 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260491945.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:17 Heat of formation + Delta-G solvation = -32.083280 kcal Electronic energy + Delta-G solvation = -15743.403163 eV Core-core repulsion = 12724.951626 eV Total energy + Delta-G solvation = -3018.451536 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.89868 -46.90841 -40.42348 -34.40667 -33.10707 -31.21934 -30.37655 -27.62413 -25.73900 -22.73106 -22.24779 -20.31865 -19.38804 -17.60459 -16.93675 -16.62804 -16.20101 -15.54380 -14.48378 -14.32718 -13.83684 -13.65262 -13.26810 -13.08308 -12.97051 -12.73211 -12.38613 -12.31611 -12.19900 -11.73423 -11.24666 -11.15503 -10.77072 -10.56300 -10.01045 -9.49472 -9.35213 -8.78131 -8.33971 -7.44954 -5.95637 -3.98852 2.47477 2.82427 3.35479 3.39727 3.42220 3.57721 3.72644 3.92803 4.16530 4.39408 4.51080 4.77150 5.02389 5.20078 5.37361 5.43299 5.45894 5.55371 5.72219 6.34966 6.57269 6.90991 7.36050 7.56771 7.72992 7.83424 8.00953 8.38086 8.45693 9.06477 9.64443 11.13650 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.057530 B = 0.005432 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.584285 B = 5153.764311 C = 5199.801623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.278 3.722 3 F -0.184 7.184 4 F -0.197 7.197 5 C 0.104 3.896 6 N -0.397 5.397 7 C 0.028 3.972 8 C -0.173 4.173 9 C 0.084 3.916 10 C -0.508 4.508 11 H 0.054 0.946 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.051 3.949 19 N -0.301 5.301 20 H 0.091 0.909 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.118 0.882 24 H 0.104 0.896 25 H 0.166 0.834 26 H 0.027 0.973 27 H 0.024 0.976 28 H 0.261 0.739 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.874 4.904 2.992 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.240 3.760 3 F -0.165 7.165 4 F -0.178 7.178 5 C -0.020 4.020 6 N -0.182 5.182 7 C -0.113 4.113 8 C -0.184 4.184 9 C 0.046 3.954 10 C -0.547 4.547 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.204 1.204 18 C -0.136 4.136 19 N -0.122 5.122 20 H 0.110 0.890 21 H 0.109 0.891 22 H 0.104 0.896 23 H 0.136 0.864 24 H 0.123 0.877 25 H 0.183 0.817 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -17.611 5.780 3.127 18.798 hybrid contribution 0.945 -0.870 -1.002 1.629 sum -16.666 4.911 2.125 17.504 Atomic orbital electron populations 1.22772 0.91103 1.05577 1.05763 1.21390 0.93439 0.76925 0.84221 1.93087 1.90459 1.36242 1.96717 1.93041 1.90634 1.80900 1.53201 1.22515 0.78396 1.03651 0.97438 1.48040 1.04079 1.05280 1.60821 1.22226 0.91038 0.92418 1.05632 1.20953 0.95920 0.94212 1.07288 1.17677 0.88029 0.92763 0.96948 1.21135 1.11365 1.30007 0.92182 0.92795 1.25011 0.96454 0.95800 0.97165 1.69948 1.18665 1.33058 1.31920 0.86647 0.77846 0.78060 0.85374 1.20268 1.21333 1.20381 1.23881 0.94490 0.95615 0.99627 1.77295 1.01855 1.07705 1.25298 0.88993 0.89070 0.89576 0.86397 0.87746 0.81654 0.95432 0.95790 0.92924 0.80446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 9.38 37.16 0.35 -1.02 15 2 C 0.28 3.38 2.23 -26.73 -0.06 3.32 15 3 F -0.18 -2.85 16.03 2.25 0.04 -2.81 15 4 F -0.20 -2.95 16.98 2.25 0.04 -2.91 15 5 C 0.10 1.26 6.05 -4.05 -0.02 1.23 15 6 N -0.40 -7.07 3.60 -61.37 -0.22 -7.29 15 7 C 0.03 0.54 11.36 -17.22 -0.20 0.35 15 8 C -0.17 -3.89 5.29 -105.05 -0.56 -4.45 15 9 C 0.08 2.19 5.46 -29.04 -0.16 2.03 15 10 C -0.51 -14.35 9.09 -34.44 -0.31 -14.67 15 11 H 0.05 1.52 7.74 -52.49 -0.41 1.11 15 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 13 N -0.90 -26.67 13.29 55.43 0.74 -25.93 15 14 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 15 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 18 C 0.05 1.07 11.96 -17.36 -0.21 0.86 15 19 N -0.30 -6.12 11.52 30.62 0.35 -5.77 15 20 H 0.09 0.49 8.14 -51.93 -0.42 0.07 15 21 H 0.09 0.46 8.14 -51.93 -0.42 0.04 15 22 H 0.09 0.59 8.14 -51.93 -0.42 0.16 15 23 H 0.12 1.02 8.07 -51.93 -0.42 0.60 15 24 H 0.10 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.17 2.76 8.06 -52.49 -0.42 2.33 15 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 27 H 0.02 0.65 8.14 -51.93 -0.42 0.22 15 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 29 H 0.18 3.36 8.06 -52.49 -0.42 2.94 15 LS Contribution 267.65 15.07 4.03 4.03 Total: -1.00 -33.74 267.65 -4.65 -38.39 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -3.34 Total: -3.53 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.26 Total: -10.83 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.87 Total: -39.00 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.07 Total: -5.72 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.74 -4.65 -38.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260491945.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.307 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds