Wall clock time and date at job start Mon Mar 30 2020 03:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47023 * 2 1 4 4 C 1.50702 * 109.47326 * 239.99779 * 2 1 3 5 5 C 1.34632 * 126.50455 * 54.59340 * 4 2 1 6 6 O 1.34427 * 109.71323 * 179.97438 * 5 4 2 7 7 C 1.34970 * 109.81424 * 359.97438 * 6 5 4 8 8 C 1.38869 * 133.37698 * 180.02562 * 7 6 5 9 9 C 1.38409 * 121.08933 * 179.97438 * 8 7 6 10 10 C 1.37629 * 121.59706 * 0.02562 * 9 8 7 11 11 C 1.40846 * 119.94025 * 0.02562 * 10 9 8 12 12 C 1.40632 * 120.74158 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00253 * 148.64964 * 12 11 10 14 14 C 1.40043 * 120.00058 * 328.64639 * 12 11 10 15 15 N 1.30810 * 119.99746 * 350.18179 * 14 12 11 16 16 Si 1.86801 * 119.99925 * 170.18135 * 14 12 11 17 17 H 1.48497 * 109.47098 * 60.00245 * 16 14 12 18 18 H 1.48499 * 109.46869 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47134 * 300.00050 * 16 14 12 20 20 C 1.40325 * 107.09276 * 359.73726 * 7 6 5 21 21 H 1.08993 * 109.47345 * 299.99753 * 1 2 3 22 22 H 1.09004 * 109.46755 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47313 * 60.00304 * 1 2 3 24 24 H 1.08998 * 109.47412 * 120.00193 * 2 1 3 25 25 H 1.09002 * 109.46962 * 60.00076 * 3 2 1 26 26 H 1.08995 * 109.47089 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47184 * 300.00333 * 3 2 1 28 28 H 1.08000 * 125.14078 * 359.95685 * 5 4 2 29 29 H 1.08000 * 119.45028 * 359.97438 * 8 7 6 30 30 H 1.08003 * 119.20353 * 180.02562 * 9 8 7 31 31 H 1.08007 * 120.03252 * 180.02562 * 10 9 8 32 32 H 0.97000 * 119.99605 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7082 -0.4287 -2.5064 6 8 2.3498 -1.2716 -3.3340 7 6 3.1105 -2.1258 -2.6174 8 6 3.9555 -3.1717 -2.9646 9 6 4.6284 -3.8981 -1.9975 10 6 4.4892 -3.6169 -0.6575 11 6 3.6453 -2.5681 -0.2432 12 6 3.4903 -2.2666 1.1216 13 1 3.2996 -1.2497 1.4318 14 6 3.5830 -3.2847 2.0786 15 7 3.6210 -4.5364 1.7004 16 14 3.6525 -2.8555 3.8953 17 1 2.4226 -2.1158 4.2766 18 1 3.7473 -4.1029 4.6954 19 1 4.8422 -2.0066 4.1582 20 6 2.9396 -1.7947 -1.2645 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.0344 0.3558 -2.8179 29 1 4.0897 -3.4223 -4.0065 30 1 5.2783 -4.7052 -2.3018 31 1 5.0268 -4.1998 0.0758 32 1 3.6856 -5.2416 2.3632 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260500505.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:41 Heat of formation + Delta-G solvation = 2.204472 kcal Electronic energy + Delta-G solvation = -15855.218035 eV Core-core repulsion = 13360.190106 eV Total energy + Delta-G solvation = -2495.027929 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.20749 -36.34002 -35.42326 -33.56077 -30.52939 -29.09542 -27.88251 -26.65403 -25.10750 -22.35303 -21.38305 -20.64640 -18.51568 -17.14053 -16.09103 -15.49663 -14.90704 -14.83734 -14.28291 -13.70876 -13.30106 -12.88524 -12.66633 -12.60093 -11.85589 -11.80299 -11.64771 -11.27536 -11.13736 -10.81147 -10.71406 -10.49357 -10.39254 -10.21315 -9.81312 -9.37720 -9.25747 -8.57534 -7.22607 -6.96995 -6.79364 -4.44952 2.27091 2.88173 2.97936 3.00417 3.16152 3.61079 3.80128 4.09428 4.52171 5.45563 5.49821 5.51197 5.78665 5.84553 6.02828 6.11896 6.22400 6.24375 6.38551 6.42675 6.46511 6.68735 6.76773 6.78857 6.97105 7.00839 7.05324 7.29178 7.49628 7.76476 7.85232 7.99006 8.07626 8.26703 8.55009 8.68204 8.84894 10.02316 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.020352 B = 0.012379 C = 0.008262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.443698 B = 2261.277327 C = 3388.380809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.041 4.041 3 C -0.138 4.138 4 C -0.113 4.113 5 C -0.094 4.094 6 O -0.206 6.206 7 C 0.080 3.920 8 C -0.258 4.258 9 C -0.054 4.054 10 C -0.209 4.209 11 C 0.162 3.838 12 C -0.439 4.439 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.781 5.781 16 Si 0.912 3.088 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.217 4.217 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.099 0.901 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.181 0.819 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 5.267 0.578 5.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 C -0.195 4.195 4 C -0.115 4.115 5 C -0.158 4.158 6 O -0.109 6.109 7 C 0.033 3.967 8 C -0.278 4.278 9 C -0.073 4.073 10 C -0.229 4.229 11 C 0.159 3.841 12 C -0.468 4.468 13 H 0.105 0.895 14 C -0.147 4.147 15 N -0.405 5.405 16 Si 0.736 3.264 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.186 1.186 20 C -0.218 4.218 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.117 0.883 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.198 0.802 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.138 0.862 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.441 5.010 0.402 5.587 hybrid contribution -0.102 0.040 0.812 0.820 sum -2.542 5.049 1.214 5.782 Atomic orbital electron populations 1.21805 0.95593 1.01623 1.00499 1.19770 0.94508 0.94737 0.96928 1.21805 1.01337 0.95801 1.00555 1.19694 0.99871 0.97881 0.94010 1.23092 1.04766 0.99464 0.88491 1.83940 1.51063 1.39443 1.36409 1.19502 0.94743 0.93038 0.89427 1.18918 1.08770 1.02065 0.98046 1.20344 0.97038 0.96677 0.93246 1.21040 1.04217 1.03743 0.93887 1.18053 0.86282 0.88672 0.91118 1.19567 1.40759 0.95647 0.90778 0.89481 1.26020 0.92284 0.94438 1.02006 1.69800 1.33233 1.00320 1.37102 0.86282 0.80255 0.79068 0.80798 1.18672 1.20082 1.18553 1.19824 1.05517 1.03061 0.93445 0.93189 0.92640 0.93456 0.88330 0.93192 0.92665 0.93383 0.80245 0.88948 0.88448 0.86172 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.02 37.16 0.34 -1.86 16 2 C -0.04 -0.77 3.22 -91.77 -0.30 -1.07 16 3 C -0.14 -2.17 9.12 37.16 0.34 -1.83 16 4 C -0.11 -2.48 4.90 -104.69 -0.51 -3.00 16 5 C -0.09 -1.92 11.38 29.46 0.34 -1.58 16 6 O -0.21 -4.80 10.66 3.51 0.04 -4.76 16 7 C 0.08 2.02 7.40 -38.56 -0.29 1.73 16 8 C -0.26 -6.21 10.02 -39.28 -0.39 -6.61 16 9 C -0.05 -1.30 9.94 -39.74 -0.39 -1.69 16 10 C -0.21 -5.42 8.66 -38.82 -0.34 -5.75 16 11 C 0.16 4.30 5.67 -104.79 -0.59 3.71 16 12 C -0.44 -11.13 8.19 -38.00 -0.31 -11.44 16 13 H 0.09 2.10 5.74 -52.48 -0.30 1.79 16 14 C 0.07 1.73 5.26 -17.31 -0.09 1.64 16 15 N -0.78 -19.42 11.00 55.55 0.61 -18.81 16 16 Si 0.91 17.78 29.57 -169.99 -5.03 12.76 16 17 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 18 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 20 C -0.22 -5.55 6.23 -104.68 -0.65 -6.20 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.67 7.89 -51.93 -0.41 0.26 16 24 H 0.10 2.04 4.92 -51.93 -0.26 1.79 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.69 8.11 -51.93 -0.42 0.26 16 28 H 0.18 2.89 8.01 -52.49 -0.42 2.46 16 29 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 31 H 0.12 3.14 6.43 -52.48 -0.34 2.80 16 32 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 LS Contribution 269.63 15.07 4.06 4.06 Total: -1.00 -27.66 269.63 -6.99 -34.65 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -3.82 Total: 6.06 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: -2.86 Total: -33.95 kcal Atomic # 7 Polarization: -19.42 SS G_CDS: 0.61 Total: -18.81 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: 0.04 Total: -4.76 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.66 -6.99 -34.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500505.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.851 kcal (2) G-P(sol) polarization free energy of solvation -27.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds