Wall clock time and date at job start Mon Mar 30 2020 03:41:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47023 * 2 1
4 4 C 1.50702 * 109.47326 * 239.99779 * 2 1 3
5 5 C 1.34632 * 126.50455 * 54.59340 * 4 2 1
6 6 O 1.34427 * 109.71323 * 179.97438 * 5 4 2
7 7 C 1.34970 * 109.81424 * 359.97438 * 6 5 4
8 8 C 1.38869 * 133.37698 * 180.02562 * 7 6 5
9 9 C 1.38409 * 121.08933 * 179.97438 * 8 7 6
10 10 C 1.37629 * 121.59706 * 0.02562 * 9 8 7
11 11 C 1.40846 * 119.94025 * 0.02562 * 10 9 8
12 12 C 1.40632 * 120.74158 * 179.97438 * 11 10 9
13 13 H 1.08005 * 120.00253 * 148.64964 * 12 11 10
14 14 C 1.40043 * 120.00058 * 328.64639 * 12 11 10
15 15 N 1.30810 * 119.99746 * 350.18179 * 14 12 11
16 16 Si 1.86801 * 119.99925 * 170.18135 * 14 12 11
17 17 H 1.48497 * 109.47098 * 60.00245 * 16 14 12
18 18 H 1.48499 * 109.46869 * 179.97438 * 16 14 12
19 19 H 1.48498 * 109.47134 * 300.00050 * 16 14 12
20 20 C 1.40325 * 107.09276 * 359.73726 * 7 6 5
21 21 H 1.08993 * 109.47345 * 299.99753 * 1 2 3
22 22 H 1.09004 * 109.46755 * 179.97438 * 1 2 3
23 23 H 1.09002 * 109.47313 * 60.00304 * 1 2 3
24 24 H 1.08998 * 109.47412 * 120.00193 * 2 1 3
25 25 H 1.09002 * 109.46962 * 60.00076 * 3 2 1
26 26 H 1.08995 * 109.47089 * 179.97438 * 3 2 1
27 27 H 1.08998 * 109.47184 * 300.00333 * 3 2 1
28 28 H 1.08000 * 125.14078 * 359.95685 * 5 4 2
29 29 H 1.08000 * 119.45028 * 359.97438 * 8 7 6
30 30 H 1.08003 * 119.20353 * 180.02562 * 9 8 7
31 31 H 1.08007 * 120.03252 * 180.02562 * 10 9 8
32 32 H 0.97000 * 119.99605 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0324 -0.7105 -1.2304
5 6 1.7082 -0.4287 -2.5064
6 8 2.3498 -1.2716 -3.3340
7 6 3.1105 -2.1258 -2.6174
8 6 3.9555 -3.1717 -2.9646
9 6 4.6284 -3.8981 -1.9975
10 6 4.4892 -3.6169 -0.6575
11 6 3.6453 -2.5681 -0.2432
12 6 3.4903 -2.2666 1.1216
13 1 3.2996 -1.2497 1.4318
14 6 3.5830 -3.2847 2.0786
15 7 3.6210 -4.5364 1.7004
16 14 3.6525 -2.8555 3.8953
17 1 2.4226 -2.1158 4.2766
18 1 3.7473 -4.1029 4.6954
19 1 4.8422 -2.0066 4.1582
20 6 2.9396 -1.7947 -1.2645
21 1 -0.3633 0.5138 0.8899
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3634 0.5138 -0.8900
24 1 1.8933 -0.5138 0.8899
25 1 1.6766 1.9563 0.8900
26 1 3.1299 1.4425 0.0005
27 1 1.6766 1.9563 -0.8899
28 1 1.0344 0.3558 -2.8179
29 1 4.0897 -3.4223 -4.0065
30 1 5.2783 -4.7052 -2.3018
31 1 5.0268 -4.1998 0.0758
32 1 3.6856 -5.2416 2.3632
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260500505.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:41
Heat of formation + Delta-G solvation = 2.204472 kcal
Electronic energy + Delta-G solvation = -15855.218035 eV
Core-core repulsion = 13360.190106 eV
Total energy + Delta-G solvation = -2495.027929 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.105 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.20749 -36.34002 -35.42326 -33.56077 -30.52939 -29.09542 -27.88251 -26.65403
-25.10750 -22.35303 -21.38305 -20.64640 -18.51568 -17.14053 -16.09103 -15.49663
-14.90704 -14.83734 -14.28291 -13.70876 -13.30106 -12.88524 -12.66633 -12.60093
-11.85589 -11.80299 -11.64771 -11.27536 -11.13736 -10.81147 -10.71406 -10.49357
-10.39254 -10.21315 -9.81312 -9.37720 -9.25747 -8.57534 -7.22607 -6.96995
-6.79364 -4.44952 2.27091 2.88173 2.97936 3.00417 3.16152 3.61079
3.80128 4.09428 4.52171 5.45563 5.49821 5.51197 5.78665 5.84553
6.02828 6.11896 6.22400 6.24375 6.38551 6.42675 6.46511 6.68735
6.76773 6.78857 6.97105 7.00839 7.05324 7.29178 7.49628 7.76476
7.85232 7.99006 8.07626 8.26703 8.55009 8.68204 8.84894 10.02316
Molecular weight = 230.10amu
Principal moments of inertia in cm(-1)
A = 0.020352 B = 0.012379 C = 0.008262
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1375.443698 B = 2261.277327 C = 3388.380809
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.041 4.041
3 C -0.138 4.138
4 C -0.113 4.113
5 C -0.094 4.094
6 O -0.206 6.206
7 C 0.080 3.920
8 C -0.258 4.258
9 C -0.054 4.054
10 C -0.209 4.209
11 C 0.162 3.838
12 C -0.439 4.439
13 H 0.087 0.913
14 C 0.072 3.928
15 N -0.781 5.781
16 Si 0.912 3.088
17 H -0.262 1.262
18 H -0.276 1.276
19 H -0.261 1.261
20 C -0.217 4.217
21 H 0.049 0.951
22 H 0.054 0.946
23 H 0.046 0.954
24 H 0.099 0.901
25 H 0.049 0.951
26 H 0.054 0.946
27 H 0.047 0.953
28 H 0.181 0.819
29 H 0.092 0.908
30 H 0.097 0.903
31 H 0.120 0.880
32 H 0.285 0.715
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.424 5.267 0.578 5.827
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.059 4.059
3 C -0.195 4.195
4 C -0.115 4.115
5 C -0.158 4.158
6 O -0.109 6.109
7 C 0.033 3.967
8 C -0.278 4.278
9 C -0.073 4.073
10 C -0.229 4.229
11 C 0.159 3.841
12 C -0.468 4.468
13 H 0.105 0.895
14 C -0.147 4.147
15 N -0.405 5.405
16 Si 0.736 3.264
17 H -0.187 1.187
18 H -0.201 1.201
19 H -0.186 1.186
20 C -0.218 4.218
21 H 0.068 0.932
22 H 0.074 0.926
23 H 0.065 0.935
24 H 0.117 0.883
25 H 0.068 0.932
26 H 0.073 0.927
27 H 0.066 0.934
28 H 0.198 0.802
29 H 0.111 0.889
30 H 0.116 0.884
31 H 0.138 0.862
32 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -2.441 5.010 0.402 5.587
hybrid contribution -0.102 0.040 0.812 0.820
sum -2.542 5.049 1.214 5.782
Atomic orbital electron populations
1.21805 0.95593 1.01623 1.00499 1.19770 0.94508 0.94737 0.96928
1.21805 1.01337 0.95801 1.00555 1.19694 0.99871 0.97881 0.94010
1.23092 1.04766 0.99464 0.88491 1.83940 1.51063 1.39443 1.36409
1.19502 0.94743 0.93038 0.89427 1.18918 1.08770 1.02065 0.98046
1.20344 0.97038 0.96677 0.93246 1.21040 1.04217 1.03743 0.93887
1.18053 0.86282 0.88672 0.91118 1.19567 1.40759 0.95647 0.90778
0.89481 1.26020 0.92284 0.94438 1.02006 1.69800 1.33233 1.00320
1.37102 0.86282 0.80255 0.79068 0.80798 1.18672 1.20082 1.18553
1.19824 1.05517 1.03061 0.93445 0.93189 0.92640 0.93456 0.88330
0.93192 0.92665 0.93383 0.80245 0.88948 0.88448 0.86172 0.90432
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.20 9.02 37.16 0.34 -1.86 16
2 C -0.04 -0.77 3.22 -91.77 -0.30 -1.07 16
3 C -0.14 -2.17 9.12 37.16 0.34 -1.83 16
4 C -0.11 -2.48 4.90 -104.69 -0.51 -3.00 16
5 C -0.09 -1.92 11.38 29.46 0.34 -1.58 16
6 O -0.21 -4.80 10.66 3.51 0.04 -4.76 16
7 C 0.08 2.02 7.40 -38.56 -0.29 1.73 16
8 C -0.26 -6.21 10.02 -39.28 -0.39 -6.61 16
9 C -0.05 -1.30 9.94 -39.74 -0.39 -1.69 16
10 C -0.21 -5.42 8.66 -38.82 -0.34 -5.75 16
11 C 0.16 4.30 5.67 -104.79 -0.59 3.71 16
12 C -0.44 -11.13 8.19 -38.00 -0.31 -11.44 16
13 H 0.09 2.10 5.74 -52.48 -0.30 1.79 16
14 C 0.07 1.73 5.26 -17.31 -0.09 1.64 16
15 N -0.78 -19.42 11.00 55.55 0.61 -18.81 16
16 Si 0.91 17.78 29.57 -169.99 -5.03 12.76 16
17 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16
18 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16
19 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16
20 C -0.22 -5.55 6.23 -104.68 -0.65 -6.20 16
21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
23 H 0.05 0.67 7.89 -51.93 -0.41 0.26 16
24 H 0.10 2.04 4.92 -51.93 -0.26 1.79 16
25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
27 H 0.05 0.69 8.11 -51.93 -0.42 0.26 16
28 H 0.18 2.89 8.01 -52.49 -0.42 2.46 16
29 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16
30 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16
31 H 0.12 3.14 6.43 -52.48 -0.34 2.80 16
32 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16
LS Contribution 269.63 15.07 4.06 4.06
Total: -1.00 -27.66 269.63 -6.99 -34.65
By element:
Atomic # 1 Polarization: 9.87 SS G_CDS: -3.82 Total: 6.06 kcal
Atomic # 6 Polarization: -31.09 SS G_CDS: -2.86 Total: -33.95 kcal
Atomic # 7 Polarization: -19.42 SS G_CDS: 0.61 Total: -18.81 kcal
Atomic # 8 Polarization: -4.80 SS G_CDS: 0.04 Total: -4.76 kcal
Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.76 kcal
Total LS contribution 4.06 Total: 4.06 kcal
Total: -27.66 -6.99 -34.65 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260500505.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.851 kcal
(2) G-P(sol) polarization free energy of solvation -27.657 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.194 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.647 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.204 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds