Wall clock time and date at job start Mon Mar 30 2020 03:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47023 * 2 1 4 4 C 1.50702 * 109.47326 * 239.99779 * 2 1 3 5 5 C 1.34632 * 126.50455 * 54.59340 * 4 2 1 6 6 O 1.34427 * 109.71323 * 179.97438 * 5 4 2 7 7 C 1.34970 * 109.81424 * 359.97438 * 6 5 4 8 8 C 1.38869 * 133.37698 * 180.02562 * 7 6 5 9 9 C 1.38409 * 121.08933 * 179.97438 * 8 7 6 10 10 C 1.37629 * 121.59706 * 0.02562 * 9 8 7 11 11 C 1.40846 * 119.94025 * 0.02562 * 10 9 8 12 12 C 1.40632 * 120.74158 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00253 * 148.64964 * 12 11 10 14 14 C 1.40043 * 120.00058 * 328.64639 * 12 11 10 15 15 N 1.30810 * 119.99746 * 350.18179 * 14 12 11 16 16 Si 1.86801 * 119.99925 * 170.18135 * 14 12 11 17 17 H 1.48497 * 109.47098 * 60.00245 * 16 14 12 18 18 H 1.48499 * 109.46869 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47134 * 300.00050 * 16 14 12 20 20 C 1.40325 * 107.09276 * 359.73726 * 7 6 5 21 21 H 1.08993 * 109.47345 * 299.99753 * 1 2 3 22 22 H 1.09004 * 109.46755 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47313 * 60.00304 * 1 2 3 24 24 H 1.08998 * 109.47412 * 120.00193 * 2 1 3 25 25 H 1.09002 * 109.46962 * 60.00076 * 3 2 1 26 26 H 1.08995 * 109.47089 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47184 * 300.00333 * 3 2 1 28 28 H 1.08000 * 125.14078 * 359.95685 * 5 4 2 29 29 H 1.08000 * 119.45028 * 359.97438 * 8 7 6 30 30 H 1.08003 * 119.20353 * 180.02562 * 9 8 7 31 31 H 1.08007 * 120.03252 * 180.02562 * 10 9 8 32 32 H 0.97000 * 119.99605 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7082 -0.4287 -2.5064 6 8 2.3498 -1.2716 -3.3340 7 6 3.1105 -2.1258 -2.6174 8 6 3.9555 -3.1717 -2.9646 9 6 4.6284 -3.8981 -1.9975 10 6 4.4892 -3.6169 -0.6575 11 6 3.6453 -2.5681 -0.2432 12 6 3.4903 -2.2666 1.1216 13 1 3.2996 -1.2497 1.4318 14 6 3.5830 -3.2847 2.0786 15 7 3.6210 -4.5364 1.7004 16 14 3.6525 -2.8555 3.8953 17 1 2.4226 -2.1158 4.2766 18 1 3.7473 -4.1029 4.6954 19 1 4.8422 -2.0066 4.1582 20 6 2.9396 -1.7947 -1.2645 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.0344 0.3558 -2.8179 29 1 4.0897 -3.4223 -4.0065 30 1 5.2783 -4.7052 -2.3018 31 1 5.0268 -4.1998 0.0758 32 1 3.6856 -5.2416 2.3632 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260500505.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:41 Heat of formation + Delta-G solvation = -11.563435 kcal Electronic energy + Delta-G solvation = -15855.815056 eV Core-core repulsion = 13360.190106 eV Total energy + Delta-G solvation = -2495.624950 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.98838 -38.19205 -36.91388 -35.40131 -32.25112 -30.95478 -29.67330 -27.88969 -26.96779 -23.93263 -23.19552 -22.45466 -20.22639 -18.92887 -17.83708 -17.29921 -16.66569 -16.58550 -15.97154 -15.24042 -14.84145 -14.51661 -14.39369 -13.96390 -13.55678 -13.39544 -12.99597 -12.95411 -12.81586 -12.40986 -12.21964 -12.05611 -12.03876 -11.89335 -11.48481 -11.16319 -10.97311 -10.31437 -9.14056 -8.79237 -8.60061 -6.36161 0.47754 1.06966 1.37428 1.48716 1.50273 1.86711 2.16397 2.35994 2.67833 3.59847 4.00083 4.10803 4.24699 4.44825 4.54241 4.60926 4.72451 4.80588 4.87834 4.95976 5.03413 5.07240 5.17092 5.18464 5.26009 5.35617 5.51393 5.59932 5.70554 5.95575 6.05660 6.08152 6.18213 6.40395 6.67025 6.79103 6.95577 8.24535 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.020352 B = 0.012379 C = 0.008262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.443698 B = 2261.277327 C = 3388.380809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.043 4.043 3 C -0.131 4.131 4 C -0.134 4.134 5 C -0.076 4.076 6 O -0.211 6.211 7 C 0.051 3.949 8 C -0.264 4.264 9 C -0.059 4.059 10 C -0.235 4.235 11 C 0.129 3.871 12 C -0.463 4.463 13 H 0.091 0.909 14 C 0.033 3.967 15 N -0.813 5.813 16 Si 0.984 3.016 17 H -0.254 1.254 18 H -0.266 1.266 19 H -0.257 1.257 20 C -0.244 4.244 21 H 0.073 0.927 22 H 0.034 0.966 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.231 0.769 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.562 6.912 0.956 7.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.061 4.061 3 C -0.188 4.188 4 C -0.136 4.136 5 C -0.140 4.140 6 O -0.113 6.113 7 C 0.004 3.996 8 C -0.284 4.284 9 C -0.077 4.077 10 C -0.255 4.255 11 C 0.126 3.874 12 C -0.490 4.490 13 H 0.109 0.891 14 C -0.184 4.184 15 N -0.438 5.438 16 Si 0.804 3.196 17 H -0.178 1.178 18 H -0.191 1.191 19 H -0.181 1.181 20 C -0.246 4.246 21 H 0.092 0.908 22 H 0.053 0.947 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.247 0.753 29 H 0.133 0.867 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.579 6.654 0.758 7.593 hybrid contribution 0.215 -0.450 0.592 0.774 sum -3.364 6.204 1.350 7.185 Atomic orbital electron populations 1.21765 0.93297 1.01008 1.02842 1.19808 0.96366 0.95761 0.94184 1.21756 1.00154 0.94112 1.02788 1.20131 0.99746 0.97592 0.96106 1.23991 1.03470 0.98804 0.87695 1.83941 1.50993 1.39538 1.36867 1.19834 0.95837 0.94084 0.89836 1.19252 1.08265 1.01702 0.99183 1.20633 0.97256 0.97300 0.92535 1.21076 1.05168 1.04548 0.94668 1.18466 0.87071 0.89534 0.92294 1.19813 1.41842 0.96337 0.91028 0.89129 1.26914 0.91166 0.93917 1.06424 1.69861 1.33598 1.01380 1.38932 0.85210 0.80482 0.79131 0.74822 1.17838 1.19069 1.18068 1.20319 1.06353 1.04315 0.93580 0.90801 0.94720 0.91173 0.91160 0.90734 0.94523 0.91356 0.75331 0.86746 0.85605 0.87374 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 9.02 71.98 0.65 -3.21 16 2 C -0.04 -1.54 3.22 -11.54 -0.04 -1.58 16 3 C -0.13 -3.80 9.12 71.98 0.66 -3.14 16 4 C -0.13 -5.80 4.90 -19.91 -0.10 -5.90 16 5 C -0.08 -2.93 11.38 66.99 0.76 -2.17 16 6 O -0.21 -9.58 10.66 -10.37 -0.11 -9.69 16 7 C 0.05 2.61 7.40 22.93 0.17 2.78 16 8 C -0.26 -12.80 10.02 22.46 0.23 -12.57 16 9 C -0.06 -2.86 9.94 22.17 0.22 -2.64 16 10 C -0.23 -12.66 8.66 22.76 0.20 -12.46 16 11 C 0.13 7.14 5.67 -19.97 -0.11 7.03 16 12 C -0.46 -24.19 8.19 23.29 0.19 -24.00 16 13 H 0.09 4.51 5.74 -2.91 -0.02 4.49 16 14 C 0.03 1.58 5.26 85.28 0.45 2.03 16 15 N -0.81 -41.56 11.00 21.85 0.24 -41.32 16 16 Si 0.98 36.42 29.57 68.60 2.03 38.45 16 17 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 18 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 19 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 20 C -0.24 -12.73 6.23 -19.90 -0.12 -12.86 16 21 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.07 1.71 7.89 -2.39 -0.02 1.69 16 24 H 0.07 2.93 4.92 -2.39 -0.01 2.91 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.69 8.11 -2.39 -0.02 1.67 16 28 H 0.23 6.26 8.01 -2.91 -0.02 6.24 16 29 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 30 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 31 H 0.11 5.94 6.43 -2.91 -0.02 5.92 16 32 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 Total: -1.00 -61.75 269.63 6.42 -55.32 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.12 Total: 25.91 kcal Atomic # 6 Polarization: -71.82 SS G_CDS: 3.15 Total: -68.68 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.24 Total: -41.32 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.11 Total: -9.69 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Total: -61.75 6.42 -55.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500505.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.761 kcal (2) G-P(sol) polarization free energy of solvation -61.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds