Wall clock time and date at job start Mon Mar 30 2020 03:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46805 * 2 1 4 4 C 1.52995 * 109.47071 * 120.00259 * 2 1 3 5 5 H 1.09000 * 109.47100 * 202.77444 * 4 2 1 6 6 C 1.50699 * 109.47252 * 82.77879 * 4 2 1 7 7 H 1.07995 * 120.00232 * 245.59567 * 6 4 2 8 8 C 1.37884 * 119.99982 * 65.58845 * 6 4 2 9 9 N 1.31510 * 120.00065 * 5.36593 * 8 6 4 10 10 Si 1.86804 * 119.99729 * 185.36375 * 8 6 4 11 11 H 1.48499 * 109.46871 * 180.02562 * 10 8 6 12 12 H 1.48497 * 109.47080 * 300.00007 * 10 8 6 13 13 H 1.48503 * 109.47026 * 60.00278 * 10 8 6 14 14 C 1.52995 * 109.47487 * 322.77782 * 4 2 1 15 15 H 1.08995 * 109.60560 * 55.17440 * 14 4 2 16 16 C 1.53861 * 109.60719 * 294.84620 * 14 4 2 17 17 C 1.55133 * 106.89728 * 192.82614 * 16 14 4 18 18 S 1.83451 * 102.20859 * 42.11159 * 17 16 14 19 19 O 1.42098 * 109.47450 * 223.33936 * 18 17 16 20 20 C 1.54269 * 109.61149 * 175.34339 * 14 4 2 21 21 H 1.09003 * 109.46782 * 65.20146 * 1 2 3 22 22 H 1.09003 * 109.46916 * 185.19274 * 1 2 3 23 23 H 1.08993 * 109.47052 * 305.19477 * 1 2 3 24 24 H 1.09005 * 109.47189 * 240.00657 * 2 1 3 25 25 H 1.09000 * 109.46639 * 185.04259 * 3 2 1 26 26 H 1.08992 * 109.47241 * 305.04718 * 3 2 1 27 27 H 1.09002 * 109.46494 * 65.04905 * 3 2 1 28 28 H 0.97002 * 119.99767 * 355.07197 * 9 8 6 29 29 H 1.09002 * 109.97301 * 312.18266 * 16 14 4 30 30 H 1.08995 * 109.97898 * 73.42021 * 16 14 4 31 31 H 1.09002 * 110.85741 * 160.29208 * 17 16 14 32 32 H 1.09003 * 110.85450 * 283.72729 * 17 16 14 33 33 H 1.09007 * 110.39824 * 266.66213 * 20 14 4 34 34 H 1.09001 * 110.40374 * 29.07782 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.0545 -0.3901 1.4712 6 6 2.0391 -2.2085 1.0061 7 1 1.3788 -2.8480 1.5731 8 6 2.8811 -2.7529 0.0596 9 7 3.7587 -1.9910 -0.5558 10 14 2.7752 -4.5728 -0.3485 11 1 3.7806 -4.9059 -1.3893 12 1 3.0461 -5.3708 0.8742 13 1 1.4151 -4.8883 -0.8543 14 6 1.1271 -0.3976 2.4335 15 1 0.0972 -0.6493 2.1809 16 6 1.2253 1.1013 2.7665 17 6 0.5522 1.3010 4.1499 18 16 1.1765 -0.1410 5.0967 19 8 0.1116 -0.7155 5.8418 20 6 1.5686 -1.2139 3.6658 21 1 -0.3633 0.4311 -0.9329 22 1 -0.3633 -1.0235 0.0930 23 1 -0.3633 0.5923 0.8397 24 1 1.8934 -0.5138 -0.8901 25 1 3.1262 1.4439 -0.0903 26 1 1.6047 1.9818 -0.8413 27 1 1.7523 1.9295 0.9318 28 1 3.7661 -1.0341 -0.3969 29 1 2.2713 1.4044 2.8141 30 1 0.7027 1.6860 2.0096 31 1 0.8761 2.2356 4.6078 32 1 -0.5337 1.2702 4.0611 33 1 1.0070 -2.1463 3.7249 34 1 2.6389 -1.4159 3.6243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260678890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:50 Heat of formation + Delta-G solvation = -56.492776 kcal Electronic energy + Delta-G solvation = -15196.813139 eV Core-core repulsion = 12834.683857 eV Total energy + Delta-G solvation = -2362.129281 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.18873 -35.26687 -33.68730 -32.13003 -29.71225 -26.57344 -26.21021 -24.30323 -22.72819 -20.06596 -18.56020 -17.09029 -16.70965 -15.84802 -14.88697 -13.90987 -13.73578 -13.68170 -13.48169 -13.24652 -12.83383 -12.50384 -12.02176 -11.68431 -11.57476 -11.29461 -11.02033 -10.85105 -10.65622 -10.44278 -10.23868 -10.10015 -10.00389 -9.82739 -9.52378 -8.92349 -8.38711 -8.25776 -7.86261 -6.31393 -4.03550 2.10982 2.80747 3.43054 3.44426 3.62470 4.15329 4.52720 5.13096 5.20358 5.37548 5.48789 5.62806 5.80873 5.88849 5.92836 6.02530 6.03467 6.17529 6.26753 6.30878 6.45924 6.58345 6.69115 6.73340 6.78519 6.81363 7.07294 7.26416 7.50630 7.65693 8.26443 8.46891 8.90883 9.66493 11.06130 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.009976 C = 0.008022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.295804 B = 2806.068856 C = 3489.658876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 C -0.163 4.163 4 C 0.053 3.947 5 H 0.025 0.975 6 C -0.587 4.587 7 H 0.046 0.954 8 C 0.021 3.979 9 N -0.913 5.913 10 Si 1.059 2.941 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.290 1.290 14 C -0.072 4.072 15 H 0.066 0.934 16 C -0.117 4.117 17 C -0.424 4.424 18 S 1.172 4.828 19 O -0.875 6.875 20 C -0.384 4.384 21 H 0.030 0.970 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.061 0.939 28 H 0.273 0.727 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.982 7.511 6.209 9.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C -0.220 4.220 4 C 0.033 3.967 5 H 0.043 0.957 6 C -0.625 4.625 7 H 0.065 0.935 8 C -0.183 4.183 9 N -0.550 5.550 10 Si 0.888 3.112 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.217 1.217 14 C -0.092 4.092 15 H 0.084 0.916 16 C -0.155 4.155 17 C -0.562 4.562 18 S 1.375 4.625 19 O -0.871 6.871 20 C -0.523 4.523 21 H 0.049 0.951 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.206 6.134 6.402 8.869 hybrid contribution -2.557 0.665 -0.565 2.701 sum -2.763 6.799 5.837 9.377 Atomic orbital electron populations 1.21859 0.97477 1.01151 0.98901 1.21327 0.94085 0.93768 1.02406 1.22330 1.00620 0.98299 1.00786 1.18884 0.93312 0.95932 0.88537 0.95655 1.21943 1.25543 0.91762 1.23253 0.93536 1.25626 0.92719 1.06139 0.93828 1.70781 1.32936 1.07445 1.43837 0.83672 0.76010 0.75061 0.76418 1.20901 1.21601 1.21699 1.21767 1.01249 0.90465 0.95674 0.91555 1.22683 1.00915 0.98215 0.93708 1.28169 1.06654 1.13959 1.07465 1.70184 1.10711 0.91850 0.89786 1.93077 1.58737 1.75509 1.59735 1.27832 1.08555 1.07683 1.08248 0.95082 0.92607 0.93882 0.90737 0.93438 0.94726 0.92009 0.91556 0.90259 0.89783 0.87036 0.89672 0.89069 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.82 37.16 0.29 -2.35 16 2 C -0.10 -2.03 2.01 -90.62 -0.18 -2.22 16 3 C -0.16 -2.89 8.82 37.16 0.33 -2.56 16 4 C 0.05 1.16 0.80 -91.78 -0.07 1.09 16 5 H 0.03 0.60 7.44 -51.93 -0.39 0.21 16 6 C -0.59 -15.18 7.54 -34.44 -0.26 -15.44 16 7 H 0.05 1.24 7.23 -52.49 -0.38 0.86 16 8 C 0.02 0.57 5.04 -17.82 -0.09 0.48 16 9 N -0.91 -25.95 13.04 55.43 0.72 -25.23 16 10 Si 1.06 24.67 29.91 -169.99 -5.08 19.59 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 14 C -0.07 -1.34 1.60 -89.51 -0.14 -1.49 16 15 H 0.07 1.34 6.11 -51.93 -0.32 1.02 16 16 C -0.12 -1.73 3.81 -25.15 -0.10 -1.83 16 17 C -0.42 -5.58 7.37 38.29 0.28 -5.30 16 18 S 1.17 16.54 14.66 -107.50 -1.58 14.96 16 19 O -0.88 -18.02 18.15 -35.23 -0.64 -18.66 16 20 C -0.38 -6.74 5.78 37.82 0.22 -6.52 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 1.17 7.82 -51.93 -0.41 0.76 16 23 H 0.04 0.75 5.25 -51.93 -0.27 0.48 16 24 H 0.07 1.84 6.30 -51.93 -0.33 1.51 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.96 3.91 -51.93 -0.20 0.75 16 28 H 0.27 7.58 6.05 -40.82 -0.25 7.34 16 29 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 30 H 0.08 1.24 4.70 -51.93 -0.24 1.00 16 31 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.80 7.92 -51.93 -0.41 1.39 16 34 H 0.12 2.12 7.86 -51.93 -0.41 1.72 16 LS Contribution 266.83 15.07 4.02 4.02 Total: -1.00 -32.93 266.83 -7.20 -40.13 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.92 Total: 1.31 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 0.27 Total: -36.13 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.72 Total: -25.23 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.64 Total: -18.66 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.59 kcal Atomic # 16 Polarization: 16.54 SS G_CDS: -1.58 Total: 14.96 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.93 -7.20 -40.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260678890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.363 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds