Wall clock time and date at job start Mon Mar 30 2020 03:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46805 * 2 1 4 4 C 1.52995 * 109.47071 * 120.00259 * 2 1 3 5 5 H 1.09000 * 109.47100 * 202.77444 * 4 2 1 6 6 C 1.50699 * 109.47252 * 82.77879 * 4 2 1 7 7 H 1.07995 * 120.00232 * 245.59567 * 6 4 2 8 8 C 1.37884 * 119.99982 * 65.58845 * 6 4 2 9 9 N 1.31510 * 120.00065 * 5.36593 * 8 6 4 10 10 Si 1.86804 * 119.99729 * 185.36375 * 8 6 4 11 11 H 1.48499 * 109.46871 * 180.02562 * 10 8 6 12 12 H 1.48497 * 109.47080 * 300.00007 * 10 8 6 13 13 H 1.48503 * 109.47026 * 60.00278 * 10 8 6 14 14 C 1.52995 * 109.47487 * 322.77782 * 4 2 1 15 15 H 1.08995 * 109.60560 * 55.17440 * 14 4 2 16 16 C 1.53861 * 109.60719 * 294.84620 * 14 4 2 17 17 C 1.55133 * 106.89728 * 192.82614 * 16 14 4 18 18 S 1.83451 * 102.20859 * 42.11159 * 17 16 14 19 19 O 1.42098 * 109.47450 * 223.33936 * 18 17 16 20 20 C 1.54269 * 109.61149 * 175.34339 * 14 4 2 21 21 H 1.09003 * 109.46782 * 65.20146 * 1 2 3 22 22 H 1.09003 * 109.46916 * 185.19274 * 1 2 3 23 23 H 1.08993 * 109.47052 * 305.19477 * 1 2 3 24 24 H 1.09005 * 109.47189 * 240.00657 * 2 1 3 25 25 H 1.09000 * 109.46639 * 185.04259 * 3 2 1 26 26 H 1.08992 * 109.47241 * 305.04718 * 3 2 1 27 27 H 1.09002 * 109.46494 * 65.04905 * 3 2 1 28 28 H 0.97002 * 119.99767 * 355.07197 * 9 8 6 29 29 H 1.09002 * 109.97301 * 312.18266 * 16 14 4 30 30 H 1.08995 * 109.97898 * 73.42021 * 16 14 4 31 31 H 1.09002 * 110.85741 * 160.29208 * 17 16 14 32 32 H 1.09003 * 110.85450 * 283.72729 * 17 16 14 33 33 H 1.09007 * 110.39824 * 266.66213 * 20 14 4 34 34 H 1.09001 * 110.40374 * 29.07782 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.0545 -0.3901 1.4712 6 6 2.0391 -2.2085 1.0061 7 1 1.3788 -2.8480 1.5731 8 6 2.8811 -2.7529 0.0596 9 7 3.7587 -1.9910 -0.5558 10 14 2.7752 -4.5728 -0.3485 11 1 3.7806 -4.9059 -1.3893 12 1 3.0461 -5.3708 0.8742 13 1 1.4151 -4.8883 -0.8543 14 6 1.1271 -0.3976 2.4335 15 1 0.0972 -0.6493 2.1809 16 6 1.2253 1.1013 2.7665 17 6 0.5522 1.3010 4.1499 18 16 1.1765 -0.1410 5.0967 19 8 0.1116 -0.7155 5.8418 20 6 1.5686 -1.2139 3.6658 21 1 -0.3633 0.4311 -0.9329 22 1 -0.3633 -1.0235 0.0930 23 1 -0.3633 0.5923 0.8397 24 1 1.8934 -0.5138 -0.8901 25 1 3.1262 1.4439 -0.0903 26 1 1.6047 1.9818 -0.8413 27 1 1.7523 1.9295 0.9318 28 1 3.7661 -1.0341 -0.3969 29 1 2.2713 1.4044 2.8141 30 1 0.7027 1.6860 2.0096 31 1 0.8761 2.2356 4.6078 32 1 -0.5337 1.2702 4.0611 33 1 1.0070 -2.1463 3.7249 34 1 2.6389 -1.4159 3.6243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260678890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:50 Heat of formation + Delta-G solvation = -78.805642 kcal Electronic energy + Delta-G solvation = -15197.780697 eV Core-core repulsion = 12834.683857 eV Total energy + Delta-G solvation = -2363.096840 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77011 -36.76459 -35.27799 -33.95419 -31.13127 -28.08531 -27.91327 -25.84421 -24.42109 -21.48480 -20.26195 -18.68795 -18.29266 -17.22850 -16.29124 -15.65050 -15.38131 -15.20580 -14.93667 -14.85525 -14.22904 -14.01145 -13.70450 -13.11708 -13.04570 -12.79060 -12.71670 -12.43240 -12.23031 -12.02505 -11.95970 -11.66328 -11.62822 -11.36808 -11.13341 -10.45144 -10.31196 -10.25697 -9.18610 -8.45237 -6.16129 0.90644 1.50523 1.55126 1.58436 1.74486 2.58207 2.87354 3.30019 3.88839 3.94229 4.14227 4.28963 4.34677 4.43007 4.46164 4.47981 4.82903 4.85826 4.87446 4.97783 5.00812 5.03932 5.11269 5.27653 5.32292 5.34770 5.51209 5.58828 5.77750 5.93246 6.27096 6.41004 6.84163 7.58619 8.93898 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.009976 C = 0.008022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.295804 B = 2806.068856 C = 3489.658876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 C -0.156 4.156 4 C 0.052 3.948 5 H 0.012 0.988 6 C -0.590 4.590 7 H 0.029 0.971 8 C -0.025 4.025 9 N -0.939 5.939 10 Si 1.094 2.906 11 H -0.285 1.285 12 H -0.277 1.277 13 H -0.284 1.284 14 C -0.073 4.073 15 H 0.045 0.955 16 C -0.114 4.114 17 C -0.414 4.414 18 S 1.259 4.741 19 O -0.936 6.936 20 C -0.400 4.400 21 H 0.046 0.954 22 H 0.027 0.973 23 H 0.065 0.935 24 H 0.030 0.970 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.267 0.733 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.161 0.839 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.237 9.699 7.189 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.116 4.116 3 C -0.213 4.213 4 C 0.033 3.967 5 H 0.030 0.970 6 C -0.628 4.628 7 H 0.047 0.953 8 C -0.224 4.224 9 N -0.577 5.577 10 Si 0.919 3.081 11 H -0.211 1.211 12 H -0.203 1.203 13 H -0.210 1.210 14 C -0.093 4.093 15 H 0.064 0.936 16 C -0.152 4.152 17 C -0.553 4.553 18 S 1.461 4.539 19 O -0.931 6.931 20 C -0.538 4.538 21 H 0.065 0.935 22 H 0.046 0.954 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.179 0.821 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.463 8.302 7.388 11.123 hybrid contribution -2.514 0.022 -0.873 2.661 sum -2.977 8.324 6.515 10.982 Atomic orbital electron populations 1.21792 0.96210 1.00029 1.00717 1.21194 0.95122 0.95598 0.99656 1.22256 1.00069 0.95917 1.03038 1.18832 0.93512 0.93682 0.90723 0.96957 1.22275 1.24257 0.94131 1.22167 0.95290 1.26635 0.92745 1.08912 0.94086 1.70857 1.34305 1.07370 1.45205 0.83198 0.76147 0.72101 0.76631 1.21074 1.20293 1.20997 1.21723 0.98992 0.93874 0.94705 0.93605 1.22637 1.02918 0.94713 0.94905 1.28141 1.06067 1.14999 1.06142 1.69619 1.08204 0.89635 0.86398 1.92944 1.61195 1.77019 1.61978 1.27919 1.08216 1.07320 1.10367 0.93474 0.95372 0.91636 0.95149 0.94259 0.93248 0.89089 0.92179 0.87799 0.88880 0.82119 0.90577 0.92353 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 7.82 71.98 0.56 -4.35 16 2 C -0.10 -4.03 2.01 -10.79 -0.02 -4.05 16 3 C -0.16 -5.15 8.82 71.98 0.63 -4.52 16 4 C 0.05 2.30 0.80 -11.54 -0.01 2.29 16 5 H 0.01 0.58 7.44 -2.39 -0.02 0.56 16 6 C -0.59 -31.44 7.54 25.60 0.19 -31.24 16 7 H 0.03 1.60 7.23 -2.91 -0.02 1.58 16 8 C -0.02 -1.37 5.04 84.66 0.43 -0.94 16 9 N -0.94 -54.67 13.04 21.45 0.28 -54.39 16 10 Si 1.09 50.81 29.91 68.60 2.05 52.86 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 C -0.07 -2.67 1.60 -10.07 -0.02 -2.69 16 15 H 0.05 1.84 6.11 -2.39 -0.01 1.83 16 16 C -0.11 -2.92 3.81 31.62 0.12 -2.80 16 17 C -0.41 -8.98 7.37 72.71 0.54 -8.44 16 18 S 1.26 32.59 14.66 -56.49 -0.83 31.76 16 19 O -0.94 -37.33 18.15 -148.98 -2.70 -40.03 16 20 C -0.40 -14.01 5.78 72.41 0.42 -13.60 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.03 1.18 7.82 -2.39 -0.02 1.16 16 23 H 0.06 2.15 5.25 -2.39 -0.01 2.13 16 24 H 0.03 1.53 6.30 -2.38 -0.02 1.51 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.09 2.44 3.91 -2.39 -0.01 2.43 16 28 H 0.27 15.28 6.05 -92.71 -0.56 14.72 16 29 H 0.10 2.24 7.86 -2.39 -0.02 2.22 16 30 H 0.09 2.29 4.70 -2.39 -0.01 2.28 16 31 H 0.16 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 2.40 7.92 -2.38 -0.02 2.38 16 34 H 0.13 4.29 7.86 -2.39 -0.02 4.28 16 Total: -1.00 -73.75 266.83 2.93 -70.82 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.29 Total: 9.32 kcal Atomic # 6 Polarization: -73.19 SS G_CDS: 2.85 Total: -70.34 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.28 Total: -54.39 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -2.70 Total: -40.03 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.05 Total: 52.86 kcal Atomic # 16 Polarization: 32.59 SS G_CDS: -0.83 Total: 31.76 kcal Total: -73.75 2.93 -70.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260678890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.981 kcal (2) G-P(sol) polarization free energy of solvation -73.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds