Wall clock time and date at job start Mon Mar 30 2020 03:47:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.53003 * 109.47177 * 2 1
4 4 C 1.53002 * 109.46889 * 240.00088 * 2 1 3
5 5 H 1.09006 * 109.46880 * 174.21562 * 4 2 1
6 6 C 1.50701 * 109.47174 * 54.21813 * 4 2 1
7 7 H 1.07997 * 119.99724 * 275.75458 * 6 4 2
8 8 C 1.37876 * 120.00047 * 95.75807 * 6 4 2
9 9 N 1.31515 * 120.00153 * 16.13262 * 8 6 4
10 10 Si 1.86797 * 119.99772 * 196.13574 * 8 6 4
11 11 H 1.48506 * 109.47275 * 89.99909 * 10 8 6
12 12 H 1.48503 * 109.47057 * 209.99759 * 10 8 6
13 13 H 1.48503 * 109.47490 * 330.00047 * 10 8 6
14 14 C 1.52996 * 109.47338 * 294.21553 * 4 2 1
15 15 H 1.09001 * 109.96457 * 58.47725 * 14 4 2
16 16 C 1.53859 * 109.97485 * 297.23551 * 14 4 2
17 17 C 1.54298 * 108.91739 * 193.42086 * 16 14 4
18 18 S 1.83099 * 104.66750 * 27.89193 * 17 16 14
19 19 O 1.42100 * 109.47010 * 111.51526 * 18 17 16
20 20 C 1.55130 * 109.97733 * 179.72936 * 14 4 2
21 21 H 1.08998 * 109.46876 * 57.64956 * 1 2 3
22 22 H 1.09001 * 109.46985 * 177.65268 * 1 2 3
23 23 H 1.08997 * 109.46598 * 297.65179 * 1 2 3
24 24 H 1.09004 * 109.46940 * 120.00197 * 2 1 3
25 25 H 1.09000 * 109.46641 * 66.64163 * 3 2 1
26 26 H 1.08999 * 109.46823 * 186.64073 * 3 2 1
27 27 H 1.08999 * 109.46904 * 306.64358 * 3 2 1
28 28 H 0.97000 * 120.00157 * 179.97438 * 9 8 6
29 29 H 1.08997 * 109.61152 * 313.30275 * 16 14 4
30 30 H 1.09003 * 109.61247 * 73.46093 * 16 14 4
31 31 H 1.09004 * 110.35932 * 269.10874 * 17 16 14
32 32 H 1.08993 * 110.52252 * 146.75383 * 17 16 14
33 33 H 1.09001 * 110.85904 * 279.65298 * 20 14 4
34 34 H 1.08998 * 110.85751 * 43.09909 * 20 14 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 1 3.1251 -0.6324 -1.3026
6 6 1.4242 -0.0983 -2.4756
7 1 0.4451 -0.4115 -2.8065
8 6 2.1108 0.8715 -3.1749
9 7 3.4016 1.0322 -2.9812
10 14 1.2075 1.9571 -4.3976
11 1 0.7004 3.1683 -3.7039
12 1 2.1378 2.3610 -5.4824
13 1 0.0663 1.2051 -4.9785
14 6 1.6522 -2.1996 -1.1788
15 1 0.5695 -2.2969 -1.0980
16 6 2.3312 -2.8639 0.0315
17 6 2.2081 -4.3960 -0.1045
18 16 2.1154 -4.6953 -1.9085
19 8 3.2992 -5.3516 -2.3411
20 6 2.1580 -2.9411 -2.4440
21 1 -0.3633 0.5499 -0.8682
22 1 -0.3633 -1.0268 -0.0421
23 1 -0.3632 0.4769 0.9103
24 1 1.8934 -0.5139 0.8900
25 1 1.7770 1.9208 0.9435
26 1 3.1236 1.4447 -0.1188
27 1 1.5829 1.9895 -0.8246
28 1 3.8847 1.7142 -3.4735
29 1 3.3840 -2.5831 0.0600
30 1 1.8432 -2.5372 0.9498
31 1 1.3010 -4.7486 0.3863
32 1 3.0838 -4.8887 0.3179
33 1 1.4853 -2.7759 -3.2856
34 1 3.1731 -2.6332 -2.6945
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260678893.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:47:55
Heat of formation + Delta-G solvation = -63.869150 kcal
Electronic energy + Delta-G solvation = -15072.898457 eV
Core-core repulsion = 12710.449312 eV
Total energy + Delta-G solvation = -2362.449145 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.108 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-37.49860 -35.13740 -33.82961 -31.98224 -29.43777 -26.45071 -26.09829 -24.66738
-22.24278 -20.11479 -18.31196 -16.98472 -16.25258 -15.25847 -14.88885 -14.44392
-13.71221 -13.55045 -13.20437 -12.93553 -12.65572 -12.19081 -12.00409 -11.64659
-11.39105 -11.09216 -10.87350 -10.82106 -10.74410 -10.49416 -10.26380 -9.99113
-9.84167 -9.73077 -9.19065 -8.90339 -8.73619 -8.31207 -7.74446 -6.03970
-3.98235 2.23994 2.93619 3.28563 3.37426 3.38784 4.27440 4.43066
5.21370 5.32264 5.36020 5.61228 5.72755 5.95976 6.06475 6.17854
6.21084 6.27336 6.36244 6.42179 6.55649 6.76471 6.82090 6.84556
6.97934 7.02081 7.22039 7.34726 7.46684 7.67176 7.85110 7.93660
8.45223 9.06912 9.60683 11.05873
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.027837 B = 0.009669 C = 0.008070
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1005.611719 B = 2895.042064 C = 3468.618294
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.086 4.086
3 C -0.122 4.122
4 C 0.049 3.951
5 H 0.059 0.941
6 C -0.503 4.503
7 H 0.055 0.945
8 C 0.073 3.927
9 N -0.884 5.884
10 Si 0.873 3.127
11 H -0.281 1.281
12 H -0.290 1.290
13 H -0.274 1.274
14 C -0.070 4.070
15 H 0.074 0.926
16 C -0.115 4.115
17 C -0.424 4.424
18 S 1.166 4.834
19 O -0.876 6.876
20 C -0.372 4.372
21 H 0.063 0.937
22 H 0.041 0.959
23 H 0.023 0.977
24 H 0.033 0.967
25 H 0.017 0.983
26 H 0.048 0.952
27 H 0.058 0.942
28 H 0.259 0.741
29 H 0.059 0.941
30 H 0.070 0.930
31 H 0.112 0.888
32 H 0.085 0.915
33 H 0.120 0.880
34 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.167 -6.362 4.971 10.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.105 4.105
3 C -0.179 4.179
4 C 0.029 3.971
5 H 0.078 0.922
6 C -0.541 4.541
7 H 0.073 0.927
8 C -0.129 4.129
9 N -0.522 5.522
10 Si 0.700 3.300
11 H -0.207 1.207
12 H -0.216 1.216
13 H -0.199 1.199
14 C -0.090 4.090
15 H 0.093 0.907
16 C -0.153 4.153
17 C -0.562 4.562
18 S 1.368 4.632
19 O -0.872 6.872
20 C -0.512 4.512
21 H 0.082 0.918
22 H 0.060 0.940
23 H 0.043 0.957
24 H 0.051 0.949
25 H 0.036 0.964
26 H 0.067 0.933
27 H 0.077 0.923
28 H 0.069 0.931
29 H 0.078 0.922
30 H 0.089 0.911
31 H 0.130 0.870
32 H 0.104 0.896
33 H 0.138 0.862
34 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -7.028 -7.221 4.346 10.974
hybrid contribution 1.429 1.928 -0.002 2.400
sum -5.599 -5.294 4.344 8.845
Atomic orbital electron populations
1.21758 0.97046 1.00189 0.99957 1.21259 0.94672 0.96297 0.98278
1.21576 1.01042 0.96792 0.98535 1.18962 0.98766 0.86866 0.92460
0.92234 1.20883 1.02515 1.20556 1.10121 0.92680 1.24861 0.94295
0.97636 0.96140 1.69973 1.06479 1.33113 1.42608 0.86914 0.80063
0.81756 0.81217 1.20725 1.21641 1.19889 1.21970 0.99156 0.99158
0.88687 0.90728 1.22209 1.01843 0.90562 1.00698 1.27944 1.06522
1.02514 1.19232 1.70074 1.13634 0.91210 0.88241 1.93081 1.52337
1.66223 1.75529 1.27920 1.07499 1.11249 1.04581 0.91807 0.93982
0.95748 0.94866 0.96379 0.93277 0.92306 0.93108 0.92173 0.91142
0.86992 0.89633 0.86182 0.88847
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.37 8.63 37.16 0.32 -2.05 16
2 C -0.09 -1.72 2.56 -90.61 -0.23 -1.95 16
3 C -0.12 -2.59 8.68 37.16 0.32 -2.27 16
4 C 0.05 1.08 1.35 -91.77 -0.12 0.96 16
5 H 0.06 1.55 7.17 -51.93 -0.37 1.17 16
6 C -0.50 -12.20 5.48 -34.44 -0.19 -12.39 16
7 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16
8 C 0.07 1.88 4.36 -17.82 -0.08 1.81 16
9 N -0.88 -24.32 12.80 55.43 0.71 -23.61 16
10 Si 0.87 20.30 29.57 -169.99 -5.03 15.28 16
11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16
12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
14 C -0.07 -1.25 1.94 -89.05 -0.17 -1.43 16
15 H 0.07 1.20 6.51 -51.93 -0.34 0.86 16
16 C -0.11 -1.87 5.06 -25.60 -0.13 -2.00 16
17 C -0.42 -5.82 7.32 37.84 0.28 -5.54 16
18 S 1.17 17.04 14.66 -107.50 -1.58 15.46 16
19 O -0.88 -18.73 18.15 -35.23 -0.64 -19.37 16
20 C -0.37 -6.73 6.07 38.28 0.23 -6.49 16
21 H 0.06 1.24 7.12 -51.93 -0.37 0.87 16
22 H 0.04 0.68 6.46 -51.93 -0.34 0.34 16
23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
24 H 0.03 0.62 6.59 -51.93 -0.34 0.28 16
25 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16
26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16
27 H 0.06 1.35 7.00 -51.93 -0.36 0.99 16
28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16
29 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16
30 H 0.07 1.06 7.17 -51.93 -0.37 0.68 16
31 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16
32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
33 H 0.12 2.06 8.06 -51.93 -0.42 1.64 16
34 H 0.09 2.04 8.10 -51.93 -0.42 1.62 16
LS Contribution 277.07 15.07 4.18 4.18
Total: -1.00 -31.61 277.07 -7.54 -39.15
By element:
Atomic # 1 Polarization: 5.69 SS G_CDS: -5.41 Total: 0.28 kcal
Atomic # 6 Polarization: -31.59 SS G_CDS: 0.23 Total: -31.36 kcal
Atomic # 7 Polarization: -24.32 SS G_CDS: 0.71 Total: -23.61 kcal
Atomic # 8 Polarization: -18.73 SS G_CDS: -0.64 Total: -19.37 kcal
Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.28 kcal
Atomic # 16 Polarization: 17.04 SS G_CDS: -1.58 Total: 15.46 kcal
Total LS contribution 4.18 Total: 4.18 kcal
Total: -31.61 -7.54 -39.15 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260678893.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.723 kcal
(2) G-P(sol) polarization free energy of solvation -31.606 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.329 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.869 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds