Wall clock time and date at job start Mon Mar 30 2020 03:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47177 * 2 1 4 4 C 1.53002 * 109.46889 * 240.00088 * 2 1 3 5 5 H 1.09006 * 109.46880 * 174.21562 * 4 2 1 6 6 C 1.50701 * 109.47174 * 54.21813 * 4 2 1 7 7 H 1.07997 * 119.99724 * 275.75458 * 6 4 2 8 8 C 1.37876 * 120.00047 * 95.75807 * 6 4 2 9 9 N 1.31515 * 120.00153 * 16.13262 * 8 6 4 10 10 Si 1.86797 * 119.99772 * 196.13574 * 8 6 4 11 11 H 1.48506 * 109.47275 * 89.99909 * 10 8 6 12 12 H 1.48503 * 109.47057 * 209.99759 * 10 8 6 13 13 H 1.48503 * 109.47490 * 330.00047 * 10 8 6 14 14 C 1.52996 * 109.47338 * 294.21553 * 4 2 1 15 15 H 1.09001 * 109.96457 * 58.47725 * 14 4 2 16 16 C 1.53859 * 109.97485 * 297.23551 * 14 4 2 17 17 C 1.54298 * 108.91739 * 193.42086 * 16 14 4 18 18 S 1.83099 * 104.66750 * 27.89193 * 17 16 14 19 19 O 1.42100 * 109.47010 * 111.51526 * 18 17 16 20 20 C 1.55130 * 109.97733 * 179.72936 * 14 4 2 21 21 H 1.08998 * 109.46876 * 57.64956 * 1 2 3 22 22 H 1.09001 * 109.46985 * 177.65268 * 1 2 3 23 23 H 1.08997 * 109.46598 * 297.65179 * 1 2 3 24 24 H 1.09004 * 109.46940 * 120.00197 * 2 1 3 25 25 H 1.09000 * 109.46641 * 66.64163 * 3 2 1 26 26 H 1.08999 * 109.46823 * 186.64073 * 3 2 1 27 27 H 1.08999 * 109.46904 * 306.64358 * 3 2 1 28 28 H 0.97000 * 120.00157 * 179.97438 * 9 8 6 29 29 H 1.08997 * 109.61152 * 313.30275 * 16 14 4 30 30 H 1.09003 * 109.61247 * 73.46093 * 16 14 4 31 31 H 1.09004 * 110.35932 * 269.10874 * 17 16 14 32 32 H 1.08993 * 110.52252 * 146.75383 * 17 16 14 33 33 H 1.09001 * 110.85904 * 279.65298 * 20 14 4 34 34 H 1.08998 * 110.85751 * 43.09909 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1251 -0.6324 -1.3026 6 6 1.4242 -0.0983 -2.4756 7 1 0.4451 -0.4115 -2.8065 8 6 2.1108 0.8715 -3.1749 9 7 3.4016 1.0322 -2.9812 10 14 1.2075 1.9571 -4.3976 11 1 0.7004 3.1683 -3.7039 12 1 2.1378 2.3610 -5.4824 13 1 0.0663 1.2051 -4.9785 14 6 1.6522 -2.1996 -1.1788 15 1 0.5695 -2.2969 -1.0980 16 6 2.3312 -2.8639 0.0315 17 6 2.2081 -4.3960 -0.1045 18 16 2.1154 -4.6953 -1.9085 19 8 3.2992 -5.3516 -2.3411 20 6 2.1580 -2.9411 -2.4440 21 1 -0.3633 0.5499 -0.8682 22 1 -0.3633 -1.0268 -0.0421 23 1 -0.3632 0.4769 0.9103 24 1 1.8934 -0.5139 0.8900 25 1 1.7770 1.9208 0.9435 26 1 3.1236 1.4447 -0.1188 27 1 1.5829 1.9895 -0.8246 28 1 3.8847 1.7142 -3.4735 29 1 3.3840 -2.5831 0.0600 30 1 1.8432 -2.5372 0.9498 31 1 1.3010 -4.7486 0.3863 32 1 3.0838 -4.8887 0.3179 33 1 1.4853 -2.7759 -3.2856 34 1 3.1731 -2.6332 -2.6945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260678893.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:55 Heat of formation + Delta-G solvation = -63.869150 kcal Electronic energy + Delta-G solvation = -15072.898457 eV Core-core repulsion = 12710.449312 eV Total energy + Delta-G solvation = -2362.449145 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.49860 -35.13740 -33.82961 -31.98224 -29.43777 -26.45071 -26.09829 -24.66738 -22.24278 -20.11479 -18.31196 -16.98472 -16.25258 -15.25847 -14.88885 -14.44392 -13.71221 -13.55045 -13.20437 -12.93553 -12.65572 -12.19081 -12.00409 -11.64659 -11.39105 -11.09216 -10.87350 -10.82106 -10.74410 -10.49416 -10.26380 -9.99113 -9.84167 -9.73077 -9.19065 -8.90339 -8.73619 -8.31207 -7.74446 -6.03970 -3.98235 2.23994 2.93619 3.28563 3.37426 3.38784 4.27440 4.43066 5.21370 5.32264 5.36020 5.61228 5.72755 5.95976 6.06475 6.17854 6.21084 6.27336 6.36244 6.42179 6.55649 6.76471 6.82090 6.84556 6.97934 7.02081 7.22039 7.34726 7.46684 7.67176 7.85110 7.93660 8.45223 9.06912 9.60683 11.05873 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027837 B = 0.009669 C = 0.008070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.611719 B = 2895.042064 C = 3468.618294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.122 4.122 4 C 0.049 3.951 5 H 0.059 0.941 6 C -0.503 4.503 7 H 0.055 0.945 8 C 0.073 3.927 9 N -0.884 5.884 10 Si 0.873 3.127 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.274 1.274 14 C -0.070 4.070 15 H 0.074 0.926 16 C -0.115 4.115 17 C -0.424 4.424 18 S 1.166 4.834 19 O -0.876 6.876 20 C -0.372 4.372 21 H 0.063 0.937 22 H 0.041 0.959 23 H 0.023 0.977 24 H 0.033 0.967 25 H 0.017 0.983 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.259 0.741 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 -6.362 4.971 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.105 4.105 3 C -0.179 4.179 4 C 0.029 3.971 5 H 0.078 0.922 6 C -0.541 4.541 7 H 0.073 0.927 8 C -0.129 4.129 9 N -0.522 5.522 10 Si 0.700 3.300 11 H -0.207 1.207 12 H -0.216 1.216 13 H -0.199 1.199 14 C -0.090 4.090 15 H 0.093 0.907 16 C -0.153 4.153 17 C -0.562 4.562 18 S 1.368 4.632 19 O -0.872 6.872 20 C -0.512 4.512 21 H 0.082 0.918 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.028 -7.221 4.346 10.974 hybrid contribution 1.429 1.928 -0.002 2.400 sum -5.599 -5.294 4.344 8.845 Atomic orbital electron populations 1.21758 0.97046 1.00189 0.99957 1.21259 0.94672 0.96297 0.98278 1.21576 1.01042 0.96792 0.98535 1.18962 0.98766 0.86866 0.92460 0.92234 1.20883 1.02515 1.20556 1.10121 0.92680 1.24861 0.94295 0.97636 0.96140 1.69973 1.06479 1.33113 1.42608 0.86914 0.80063 0.81756 0.81217 1.20725 1.21641 1.19889 1.21970 0.99156 0.99158 0.88687 0.90728 1.22209 1.01843 0.90562 1.00698 1.27944 1.06522 1.02514 1.19232 1.70074 1.13634 0.91210 0.88241 1.93081 1.52337 1.66223 1.75529 1.27920 1.07499 1.11249 1.04581 0.91807 0.93982 0.95748 0.94866 0.96379 0.93277 0.92306 0.93108 0.92173 0.91142 0.86992 0.89633 0.86182 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.63 37.16 0.32 -2.05 16 2 C -0.09 -1.72 2.56 -90.61 -0.23 -1.95 16 3 C -0.12 -2.59 8.68 37.16 0.32 -2.27 16 4 C 0.05 1.08 1.35 -91.77 -0.12 0.96 16 5 H 0.06 1.55 7.17 -51.93 -0.37 1.17 16 6 C -0.50 -12.20 5.48 -34.44 -0.19 -12.39 16 7 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 8 C 0.07 1.88 4.36 -17.82 -0.08 1.81 16 9 N -0.88 -24.32 12.80 55.43 0.71 -23.61 16 10 Si 0.87 20.30 29.57 -169.99 -5.03 15.28 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 14 C -0.07 -1.25 1.94 -89.05 -0.17 -1.43 16 15 H 0.07 1.20 6.51 -51.93 -0.34 0.86 16 16 C -0.11 -1.87 5.06 -25.60 -0.13 -2.00 16 17 C -0.42 -5.82 7.32 37.84 0.28 -5.54 16 18 S 1.17 17.04 14.66 -107.50 -1.58 15.46 16 19 O -0.88 -18.73 18.15 -35.23 -0.64 -19.37 16 20 C -0.37 -6.73 6.07 38.28 0.23 -6.49 16 21 H 0.06 1.24 7.12 -51.93 -0.37 0.87 16 22 H 0.04 0.68 6.46 -51.93 -0.34 0.34 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.03 0.62 6.59 -51.93 -0.34 0.28 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.35 7.00 -51.93 -0.36 0.99 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.07 1.06 7.17 -51.93 -0.37 0.68 16 31 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.12 2.06 8.06 -51.93 -0.42 1.64 16 34 H 0.09 2.04 8.10 -51.93 -0.42 1.62 16 LS Contribution 277.07 15.07 4.18 4.18 Total: -1.00 -31.61 277.07 -7.54 -39.15 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.41 Total: 0.28 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 0.23 Total: -31.36 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.71 Total: -23.61 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.64 Total: -19.37 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.28 kcal Atomic # 16 Polarization: 17.04 SS G_CDS: -1.58 Total: 15.46 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.61 -7.54 -39.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260678893.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.723 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds