Wall clock time and date at job start Mon Mar 30 2020 03:47:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.53003 * 109.47177 * 2 1
4 4 C 1.53002 * 109.46889 * 240.00088 * 2 1 3
5 5 H 1.09006 * 109.46880 * 174.21562 * 4 2 1
6 6 C 1.50701 * 109.47174 * 54.21813 * 4 2 1
7 7 H 1.07997 * 119.99724 * 275.75458 * 6 4 2
8 8 C 1.37876 * 120.00047 * 95.75807 * 6 4 2
9 9 N 1.31515 * 120.00153 * 16.13262 * 8 6 4
10 10 Si 1.86797 * 119.99772 * 196.13574 * 8 6 4
11 11 H 1.48506 * 109.47275 * 89.99909 * 10 8 6
12 12 H 1.48503 * 109.47057 * 209.99759 * 10 8 6
13 13 H 1.48503 * 109.47490 * 330.00047 * 10 8 6
14 14 C 1.52996 * 109.47338 * 294.21553 * 4 2 1
15 15 H 1.09001 * 109.96457 * 58.47725 * 14 4 2
16 16 C 1.53859 * 109.97485 * 297.23551 * 14 4 2
17 17 C 1.54298 * 108.91739 * 193.42086 * 16 14 4
18 18 S 1.83099 * 104.66750 * 27.89193 * 17 16 14
19 19 O 1.42100 * 109.47010 * 111.51526 * 18 17 16
20 20 C 1.55130 * 109.97733 * 179.72936 * 14 4 2
21 21 H 1.08998 * 109.46876 * 57.64956 * 1 2 3
22 22 H 1.09001 * 109.46985 * 177.65268 * 1 2 3
23 23 H 1.08997 * 109.46598 * 297.65179 * 1 2 3
24 24 H 1.09004 * 109.46940 * 120.00197 * 2 1 3
25 25 H 1.09000 * 109.46641 * 66.64163 * 3 2 1
26 26 H 1.08999 * 109.46823 * 186.64073 * 3 2 1
27 27 H 1.08999 * 109.46904 * 306.64358 * 3 2 1
28 28 H 0.97000 * 120.00157 * 179.97438 * 9 8 6
29 29 H 1.08997 * 109.61152 * 313.30275 * 16 14 4
30 30 H 1.09003 * 109.61247 * 73.46093 * 16 14 4
31 31 H 1.09004 * 110.35932 * 269.10874 * 17 16 14
32 32 H 1.08993 * 110.52252 * 146.75383 * 17 16 14
33 33 H 1.09001 * 110.85904 * 279.65298 * 20 14 4
34 34 H 1.08998 * 110.85751 * 43.09909 * 20 14 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 1 3.1251 -0.6324 -1.3026
6 6 1.4242 -0.0983 -2.4756
7 1 0.4451 -0.4115 -2.8065
8 6 2.1108 0.8715 -3.1749
9 7 3.4016 1.0322 -2.9812
10 14 1.2075 1.9571 -4.3976
11 1 0.7004 3.1683 -3.7039
12 1 2.1378 2.3610 -5.4824
13 1 0.0663 1.2051 -4.9785
14 6 1.6522 -2.1996 -1.1788
15 1 0.5695 -2.2969 -1.0980
16 6 2.3312 -2.8639 0.0315
17 6 2.2081 -4.3960 -0.1045
18 16 2.1154 -4.6953 -1.9085
19 8 3.2992 -5.3516 -2.3411
20 6 2.1580 -2.9411 -2.4440
21 1 -0.3633 0.5499 -0.8682
22 1 -0.3633 -1.0268 -0.0421
23 1 -0.3632 0.4769 0.9103
24 1 1.8934 -0.5139 0.8900
25 1 1.7770 1.9208 0.9435
26 1 3.1236 1.4447 -0.1188
27 1 1.5829 1.9895 -0.8246
28 1 3.8847 1.7142 -3.4735
29 1 3.3840 -2.5831 0.0600
30 1 1.8432 -2.5372 0.9498
31 1 1.3010 -4.7486 0.3863
32 1 3.0838 -4.8887 0.3179
33 1 1.4853 -2.7759 -3.2856
34 1 3.1731 -2.6332 -2.6945
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260678893.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:47:54
Heat of formation + Delta-G solvation = -85.096761 kcal
Electronic energy + Delta-G solvation = -15073.818955 eV
Core-core repulsion = 12710.449312 eV
Total energy + Delta-G solvation = -2363.369643 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.108 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.07463 -36.70579 -35.34406 -33.86667 -30.86100 -28.16359 -27.66306 -26.29580
-23.77458 -21.61692 -19.96078 -18.33682 -18.04049 -16.63615 -16.55200 -16.15961
-15.20938 -15.01643 -14.68298 -14.45871 -14.32574 -13.77295 -13.51343 -13.22728
-13.08283 -12.76622 -12.58703 -12.37725 -12.33127 -12.02755 -11.82382 -11.69800
-11.43524 -11.25813 -10.83532 -10.60801 -10.37975 -10.25810 -9.13369 -8.02671
-5.98960 0.99534 1.40795 1.45497 1.50657 1.65777 2.49763 2.95030
3.29685 4.00134 4.06683 4.21934 4.42523 4.51203 4.56104 4.63193
4.72040 4.97690 4.99719 5.05335 5.10718 5.22705 5.26769 5.34288
5.44155 5.49934 5.58415 5.71389 5.82421 5.87975 6.07427 6.08269
6.54701 7.15132 7.61594 9.07298
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.027837 B = 0.009669 C = 0.008070
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1005.611719 B = 2895.042064 C = 3468.618294
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.086 4.086
3 C -0.117 4.117
4 C 0.045 3.955
5 H 0.007 0.993
6 C -0.489 4.489
7 H 0.063 0.937
8 C 0.022 3.978
9 N -0.924 5.924
10 Si 0.920 3.080
11 H -0.281 1.281
12 H -0.302 1.302
13 H -0.260 1.260
14 C -0.069 4.069
15 H 0.109 0.891
16 C -0.114 4.114
17 C -0.416 4.416
18 S 1.259 4.741
19 O -0.942 6.942
20 C -0.390 4.390
21 H 0.044 0.956
22 H 0.067 0.933
23 H 0.046 0.954
24 H 0.051 0.949
25 H 0.045 0.955
26 H 0.018 0.982
27 H 0.033 0.967
28 H 0.251 0.749
29 H 0.026 0.974
30 H 0.095 0.905
31 H 0.167 0.833
32 H 0.080 0.920
33 H 0.126 0.874
34 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.149 -7.821 6.663 14.442
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.105 4.105
3 C -0.174 4.174
4 C 0.025 3.975
5 H 0.025 0.975
6 C -0.527 4.527
7 H 0.081 0.919
8 C -0.175 4.175
9 N -0.565 5.565
10 Si 0.748 3.252
11 H -0.207 1.207
12 H -0.229 1.229
13 H -0.184 1.184
14 C -0.088 4.088
15 H 0.127 0.873
16 C -0.152 4.152
17 C -0.555 4.555
18 S 1.462 4.538
19 O -0.938 6.938
20 C -0.529 4.529
21 H 0.063 0.937
22 H 0.086 0.914
23 H 0.065 0.935
24 H 0.069 0.931
25 H 0.064 0.936
26 H 0.037 0.963
27 H 0.052 0.948
28 H 0.060 0.940
29 H 0.045 0.955
30 H 0.113 0.887
31 H 0.185 0.815
32 H 0.099 0.901
33 H 0.144 0.856
34 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -10.035 -8.674 6.016 14.565
hybrid contribution 2.359 2.360 -0.435 3.365
sum -7.676 -6.314 5.581 11.399
Atomic orbital electron populations
1.21686 0.94558 1.01853 1.00258 1.21222 0.96664 0.94955 0.97642
1.21515 0.98870 0.98097 0.98926 1.18902 0.95563 0.90146 0.92874
0.97500 1.21253 1.02201 1.19199 1.10034 0.91865 1.25471 0.94661
0.99258 0.98152 1.70134 1.07953 1.34029 1.44390 0.86135 0.79185
0.80575 0.79295 1.20707 1.22932 1.18379 1.21948 1.01172 0.96345
0.89347 0.87266 1.22142 0.99921 0.92316 1.00807 1.27944 1.09148
1.00434 1.17944 1.69368 1.10099 0.86453 0.87906 1.92942 1.55080
1.67653 1.78113 1.28017 1.04519 1.14848 1.05497 0.93724 0.91396
0.93499 0.93070 0.93571 0.96304 0.94773 0.93995 0.95460 0.88692
0.81549 0.90095 0.85592 0.94011
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.05 8.63 71.98 0.62 -3.42 16
2 C -0.09 -3.29 2.56 -10.79 -0.03 -3.32 16
3 C -0.12 -4.95 8.68 71.98 0.63 -4.32 16
4 C 0.04 1.98 1.35 -11.54 -0.02 1.96 16
5 H 0.01 0.36 7.17 -2.38 -0.02 0.34 16
6 C -0.49 -23.74 5.48 25.60 0.14 -23.60 16
7 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16
8 C 0.02 1.18 4.36 84.65 0.37 1.55 16
9 N -0.92 -53.62 12.80 21.45 0.27 -53.35 16
10 Si 0.92 42.34 29.57 68.60 2.03 44.37 16
11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
12 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16
13 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16
14 C -0.07 -2.33 1.94 -9.78 -0.02 -2.34 16
15 H 0.11 2.99 6.51 -2.39 -0.02 2.97 16
16 C -0.11 -3.38 5.06 31.32 0.16 -3.22 16
17 C -0.42 -9.64 7.32 72.42 0.53 -9.11 16
18 S 1.26 33.95 14.66 -56.49 -0.83 33.12 16
19 O -0.94 -39.70 18.15 -148.98 -2.70 -42.41 16
20 C -0.39 -14.01 6.07 72.71 0.44 -13.57 16
21 H 0.04 1.60 7.12 -2.39 -0.02 1.58 16
22 H 0.07 1.81 6.46 -2.39 -0.02 1.80 16
23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16
24 H 0.05 1.79 6.59 -2.38 -0.02 1.77 16
25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16
26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16
27 H 0.03 1.58 7.00 -2.39 -0.02 1.56 16
28 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16
29 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16
30 H 0.09 2.39 7.17 -2.39 -0.02 2.38 16
31 H 0.17 2.21 8.14 -2.39 -0.02 2.19 16
32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16
33 H 0.13 4.25 8.06 -2.39 -0.02 4.23 16
34 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16
Total: -1.00 -72.71 277.07 2.65 -70.06
By element:
Atomic # 1 Polarization: 6.55 SS G_CDS: 1.06 Total: 7.61 kcal
Atomic # 6 Polarization: -62.22 SS G_CDS: 2.82 Total: -59.40 kcal
Atomic # 7 Polarization: -53.62 SS G_CDS: 0.27 Total: -53.35 kcal
Atomic # 8 Polarization: -39.70 SS G_CDS: -2.70 Total: -42.41 kcal
Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal
Atomic # 16 Polarization: 33.95 SS G_CDS: -0.83 Total: 33.12 kcal
Total: -72.71 2.65 -70.06 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260678893.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.040 kcal
(2) G-P(sol) polarization free energy of solvation -72.709 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.749 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.097 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds