Wall clock time and date at job start Mon Mar 30 2020 03:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47177 * 2 1 4 4 C 1.53002 * 109.46889 * 240.00088 * 2 1 3 5 5 H 1.09006 * 109.46880 * 174.21562 * 4 2 1 6 6 C 1.50701 * 109.47174 * 54.21813 * 4 2 1 7 7 H 1.07997 * 119.99724 * 275.75458 * 6 4 2 8 8 C 1.37876 * 120.00047 * 95.75807 * 6 4 2 9 9 N 1.31515 * 120.00153 * 16.13262 * 8 6 4 10 10 Si 1.86797 * 119.99772 * 196.13574 * 8 6 4 11 11 H 1.48506 * 109.47275 * 89.99909 * 10 8 6 12 12 H 1.48503 * 109.47057 * 209.99759 * 10 8 6 13 13 H 1.48503 * 109.47490 * 330.00047 * 10 8 6 14 14 C 1.52996 * 109.47338 * 294.21553 * 4 2 1 15 15 H 1.09001 * 109.96457 * 58.47725 * 14 4 2 16 16 C 1.53859 * 109.97485 * 297.23551 * 14 4 2 17 17 C 1.54298 * 108.91739 * 193.42086 * 16 14 4 18 18 S 1.83099 * 104.66750 * 27.89193 * 17 16 14 19 19 O 1.42100 * 109.47010 * 111.51526 * 18 17 16 20 20 C 1.55130 * 109.97733 * 179.72936 * 14 4 2 21 21 H 1.08998 * 109.46876 * 57.64956 * 1 2 3 22 22 H 1.09001 * 109.46985 * 177.65268 * 1 2 3 23 23 H 1.08997 * 109.46598 * 297.65179 * 1 2 3 24 24 H 1.09004 * 109.46940 * 120.00197 * 2 1 3 25 25 H 1.09000 * 109.46641 * 66.64163 * 3 2 1 26 26 H 1.08999 * 109.46823 * 186.64073 * 3 2 1 27 27 H 1.08999 * 109.46904 * 306.64358 * 3 2 1 28 28 H 0.97000 * 120.00157 * 179.97438 * 9 8 6 29 29 H 1.08997 * 109.61152 * 313.30275 * 16 14 4 30 30 H 1.09003 * 109.61247 * 73.46093 * 16 14 4 31 31 H 1.09004 * 110.35932 * 269.10874 * 17 16 14 32 32 H 1.08993 * 110.52252 * 146.75383 * 17 16 14 33 33 H 1.09001 * 110.85904 * 279.65298 * 20 14 4 34 34 H 1.08998 * 110.85751 * 43.09909 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1251 -0.6324 -1.3026 6 6 1.4242 -0.0983 -2.4756 7 1 0.4451 -0.4115 -2.8065 8 6 2.1108 0.8715 -3.1749 9 7 3.4016 1.0322 -2.9812 10 14 1.2075 1.9571 -4.3976 11 1 0.7004 3.1683 -3.7039 12 1 2.1378 2.3610 -5.4824 13 1 0.0663 1.2051 -4.9785 14 6 1.6522 -2.1996 -1.1788 15 1 0.5695 -2.2969 -1.0980 16 6 2.3312 -2.8639 0.0315 17 6 2.2081 -4.3960 -0.1045 18 16 2.1154 -4.6953 -1.9085 19 8 3.2992 -5.3516 -2.3411 20 6 2.1580 -2.9411 -2.4440 21 1 -0.3633 0.5499 -0.8682 22 1 -0.3633 -1.0268 -0.0421 23 1 -0.3632 0.4769 0.9103 24 1 1.8934 -0.5139 0.8900 25 1 1.7770 1.9208 0.9435 26 1 3.1236 1.4447 -0.1188 27 1 1.5829 1.9895 -0.8246 28 1 3.8847 1.7142 -3.4735 29 1 3.3840 -2.5831 0.0600 30 1 1.8432 -2.5372 0.9498 31 1 1.3010 -4.7486 0.3863 32 1 3.0838 -4.8887 0.3179 33 1 1.4853 -2.7759 -3.2856 34 1 3.1731 -2.6332 -2.6945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260678893.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:54 Heat of formation + Delta-G solvation = -85.096761 kcal Electronic energy + Delta-G solvation = -15073.818955 eV Core-core repulsion = 12710.449312 eV Total energy + Delta-G solvation = -2363.369643 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.07463 -36.70579 -35.34406 -33.86667 -30.86100 -28.16359 -27.66306 -26.29580 -23.77458 -21.61692 -19.96078 -18.33682 -18.04049 -16.63615 -16.55200 -16.15961 -15.20938 -15.01643 -14.68298 -14.45871 -14.32574 -13.77295 -13.51343 -13.22728 -13.08283 -12.76622 -12.58703 -12.37725 -12.33127 -12.02755 -11.82382 -11.69800 -11.43524 -11.25813 -10.83532 -10.60801 -10.37975 -10.25810 -9.13369 -8.02671 -5.98960 0.99534 1.40795 1.45497 1.50657 1.65777 2.49763 2.95030 3.29685 4.00134 4.06683 4.21934 4.42523 4.51203 4.56104 4.63193 4.72040 4.97690 4.99719 5.05335 5.10718 5.22705 5.26769 5.34288 5.44155 5.49934 5.58415 5.71389 5.82421 5.87975 6.07427 6.08269 6.54701 7.15132 7.61594 9.07298 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027837 B = 0.009669 C = 0.008070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.611719 B = 2895.042064 C = 3468.618294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 C -0.117 4.117 4 C 0.045 3.955 5 H 0.007 0.993 6 C -0.489 4.489 7 H 0.063 0.937 8 C 0.022 3.978 9 N -0.924 5.924 10 Si 0.920 3.080 11 H -0.281 1.281 12 H -0.302 1.302 13 H -0.260 1.260 14 C -0.069 4.069 15 H 0.109 0.891 16 C -0.114 4.114 17 C -0.416 4.416 18 S 1.259 4.741 19 O -0.942 6.942 20 C -0.390 4.390 21 H 0.044 0.956 22 H 0.067 0.933 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.018 0.982 27 H 0.033 0.967 28 H 0.251 0.749 29 H 0.026 0.974 30 H 0.095 0.905 31 H 0.167 0.833 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 -7.821 6.663 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.105 4.105 3 C -0.174 4.174 4 C 0.025 3.975 5 H 0.025 0.975 6 C -0.527 4.527 7 H 0.081 0.919 8 C -0.175 4.175 9 N -0.565 5.565 10 Si 0.748 3.252 11 H -0.207 1.207 12 H -0.229 1.229 13 H -0.184 1.184 14 C -0.088 4.088 15 H 0.127 0.873 16 C -0.152 4.152 17 C -0.555 4.555 18 S 1.462 4.538 19 O -0.938 6.938 20 C -0.529 4.529 21 H 0.063 0.937 22 H 0.086 0.914 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.185 0.815 32 H 0.099 0.901 33 H 0.144 0.856 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.035 -8.674 6.016 14.565 hybrid contribution 2.359 2.360 -0.435 3.365 sum -7.676 -6.314 5.581 11.399 Atomic orbital electron populations 1.21686 0.94558 1.01853 1.00258 1.21222 0.96664 0.94955 0.97642 1.21515 0.98870 0.98097 0.98926 1.18902 0.95563 0.90146 0.92874 0.97500 1.21253 1.02201 1.19199 1.10034 0.91865 1.25471 0.94661 0.99258 0.98152 1.70134 1.07953 1.34029 1.44390 0.86135 0.79185 0.80575 0.79295 1.20707 1.22932 1.18379 1.21948 1.01172 0.96345 0.89347 0.87266 1.22142 0.99921 0.92316 1.00807 1.27944 1.09148 1.00434 1.17944 1.69368 1.10099 0.86453 0.87906 1.92942 1.55080 1.67653 1.78113 1.28017 1.04519 1.14848 1.05497 0.93724 0.91396 0.93499 0.93070 0.93571 0.96304 0.94773 0.93995 0.95460 0.88692 0.81549 0.90095 0.85592 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 8.63 71.98 0.62 -3.42 16 2 C -0.09 -3.29 2.56 -10.79 -0.03 -3.32 16 3 C -0.12 -4.95 8.68 71.98 0.63 -4.32 16 4 C 0.04 1.98 1.35 -11.54 -0.02 1.96 16 5 H 0.01 0.36 7.17 -2.38 -0.02 0.34 16 6 C -0.49 -23.74 5.48 25.60 0.14 -23.60 16 7 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 8 C 0.02 1.18 4.36 84.65 0.37 1.55 16 9 N -0.92 -53.62 12.80 21.45 0.27 -53.35 16 10 Si 0.92 42.34 29.57 68.60 2.03 44.37 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 13 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 14 C -0.07 -2.33 1.94 -9.78 -0.02 -2.34 16 15 H 0.11 2.99 6.51 -2.39 -0.02 2.97 16 16 C -0.11 -3.38 5.06 31.32 0.16 -3.22 16 17 C -0.42 -9.64 7.32 72.42 0.53 -9.11 16 18 S 1.26 33.95 14.66 -56.49 -0.83 33.12 16 19 O -0.94 -39.70 18.15 -148.98 -2.70 -42.41 16 20 C -0.39 -14.01 6.07 72.71 0.44 -13.57 16 21 H 0.04 1.60 7.12 -2.39 -0.02 1.58 16 22 H 0.07 1.81 6.46 -2.39 -0.02 1.80 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.79 6.59 -2.38 -0.02 1.77 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.03 1.58 7.00 -2.39 -0.02 1.56 16 28 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 30 H 0.09 2.39 7.17 -2.39 -0.02 2.38 16 31 H 0.17 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.13 4.25 8.06 -2.39 -0.02 4.23 16 34 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 Total: -1.00 -72.71 277.07 2.65 -70.06 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.06 Total: 7.61 kcal Atomic # 6 Polarization: -62.22 SS G_CDS: 2.82 Total: -59.40 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.27 Total: -53.35 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -2.70 Total: -42.41 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 33.95 SS G_CDS: -0.83 Total: 33.12 kcal Total: -72.71 2.65 -70.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260678893.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.040 kcal (2) G-P(sol) polarization free energy of solvation -72.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds