Wall clock time and date at job start Mon Mar 30 2020 03:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99918 * 2 1 4 4 C 1.53003 * 109.47366 * 179.10405 * 3 2 1 5 5 C 1.50697 * 109.47151 * 59.10597 * 3 2 1 6 6 H 1.07997 * 120.00207 * 239.99791 * 5 3 2 7 7 C 1.37883 * 120.00184 * 59.99870 * 5 3 2 8 8 N 1.31510 * 119.99656 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00031 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46907 * 90.00535 * 9 7 5 11 11 H 1.48501 * 109.46854 * 209.99816 * 9 7 5 12 12 H 1.48490 * 109.47462 * 330.00129 * 9 7 5 13 13 C 1.53001 * 109.47289 * 299.10617 * 3 2 1 14 14 H 1.09000 * 109.39004 * 60.27190 * 13 3 2 15 15 C 1.52591 * 109.39165 * 179.97438 * 13 3 2 16 16 C 1.52575 * 110.72502 * 190.82625 * 15 13 3 17 17 C 1.53102 * 109.95564 * 289.32109 * 16 15 13 18 18 S 1.81739 * 108.83927 * 63.02626 * 17 16 15 19 19 C 1.53093 * 109.39064 * 300.46601 * 13 3 2 20 20 H 1.08998 * 109.46642 * 186.03821 * 1 2 3 21 21 H 1.09001 * 109.46460 * 306.03656 * 1 2 3 22 22 H 1.08995 * 109.47315 * 66.03729 * 1 2 3 23 23 H 1.08997 * 109.47487 * 179.97438 * 4 3 2 24 24 H 1.08994 * 109.47318 * 300.00234 * 4 3 2 25 25 H 1.08998 * 109.46738 * 60.00141 * 4 3 2 26 26 H 0.97001 * 120.00044 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.22519 * 311.14505 * 15 13 3 28 28 H 1.09002 * 109.22655 * 70.54195 * 15 13 3 29 29 H 1.08992 * 109.39595 * 49.47257 * 16 15 13 30 30 H 1.09003 * 109.39140 * 169.27753 * 16 15 13 31 31 H 1.09004 * 109.57818 * 182.83719 * 17 16 15 32 32 H 1.09002 * 109.57677 * 303.21853 * 17 16 15 33 33 H 1.08993 * 109.57865 * 296.63667 * 19 13 3 34 34 H 1.09003 * 109.57307 * 57.02115 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5353 1.1848 0.0226 5 6 1.5481 2.0610 1.2192 6 1 1.0000 2.9847 1.1065 7 6 1.8250 1.5731 2.4787 8 7 2.4929 0.4486 2.6160 9 14 1.2515 2.5094 3.9900 10 1 -0.1034 2.0413 4.3776 11 1 2.1972 2.2692 5.1094 12 1 1.2049 3.9618 3.6844 13 6 1.5767 2.0567 -1.2603 14 1 0.4904 2.1462 -1.2726 15 6 2.1977 3.4505 -1.2581 16 6 1.5816 4.3179 -2.3517 17 6 2.0425 3.8296 -3.7277 18 16 1.4336 2.1366 -3.9838 19 6 2.0369 1.2817 -2.4977 20 1 -0.3632 -1.0220 0.1081 21 1 -0.3632 0.6046 0.8311 22 1 -0.3634 0.4174 -0.9390 23 1 3.9787 2.1805 0.0221 24 1 3.8442 0.6495 0.9204 25 1 3.8696 0.6382 -0.8593 26 1 2.6881 0.1055 3.5021 27 1 2.0255 3.9187 -0.2890 28 1 3.2708 3.3656 -1.4300 29 1 0.4950 4.2582 -2.2919 30 1 1.8954 5.3525 -2.2128 31 1 1.6396 4.4836 -4.5011 32 1 3.1316 3.8367 -3.7718 33 1 3.1258 1.2389 -2.5178 34 1 1.6303 0.2708 -2.4676 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260719851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:01 Heat of formation + Delta-G solvation = -75.115950 kcal Electronic energy + Delta-G solvation = -15463.442590 eV Core-core repulsion = 13100.505747 eV Total energy + Delta-G solvation = -2362.936843 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99938 -36.79506 -34.55645 -33.05120 -30.17588 -28.37431 -27.21008 -26.55097 -24.44920 -22.37554 -20.16006 -18.51603 -17.76428 -16.67044 -16.28555 -16.00651 -15.58292 -15.28587 -15.13756 -14.40420 -14.34289 -13.77233 -13.61505 -13.31195 -12.88381 -12.84110 -12.60023 -12.37350 -12.31518 -12.11923 -12.03260 -11.89993 -11.58590 -11.19651 -10.63002 -10.54587 -10.44989 -9.65708 -8.62019 -7.97696 -6.22157 0.92949 1.39778 1.43389 1.50448 1.66078 2.43261 3.17846 3.69714 3.84750 4.00272 4.05187 4.22049 4.39201 4.47554 4.64979 4.69310 4.82902 4.86381 4.88350 4.94240 5.00585 5.14023 5.18387 5.20945 5.28836 5.43884 5.46879 5.60317 5.74204 6.13277 6.30711 6.80838 7.18880 7.54456 8.99299 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035561 B = 0.009482 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.192231 B = 2952.207176 C = 3269.759232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.401 6.401 3 C 0.237 3.763 4 C -0.120 4.120 5 C -0.551 4.551 6 H 0.054 0.946 7 C 0.038 3.962 8 N -0.885 5.885 9 Si 0.937 3.063 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.267 1.267 13 C -0.092 4.092 14 H 0.056 0.944 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.066 4.066 18 S -0.315 6.315 19 C -0.053 4.053 20 H 0.065 0.935 21 H 0.026 0.974 22 H 0.028 0.972 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.029 0.971 26 H 0.257 0.743 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 6.138 -8.741 10.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.321 6.321 3 C 0.197 3.803 4 C -0.177 4.177 5 C -0.589 4.589 6 H 0.072 0.928 7 C -0.165 4.165 8 N -0.522 5.522 9 Si 0.763 3.237 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.191 1.191 13 C -0.112 4.112 14 H 0.075 0.925 15 C -0.151 4.151 16 C -0.154 4.154 17 C -0.214 4.214 18 S -0.088 6.088 19 C -0.201 4.201 20 H 0.084 0.916 21 H 0.044 0.956 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.123 5.438 -9.522 11.023 hybrid contribution 0.183 0.720 2.166 2.290 sum -0.940 6.158 -7.356 9.639 Atomic orbital electron populations 1.22240 0.83547 1.00083 0.98483 1.87810 1.18249 1.31399 1.94598 1.19093 0.90809 0.80237 0.90121 1.21610 0.95974 0.99771 1.00352 1.21678 1.36940 1.08596 0.91690 0.92824 1.25596 0.94550 0.95177 1.01175 1.70119 1.38938 1.20343 1.22810 0.85902 0.77931 0.79644 0.80176 1.20801 1.21257 1.19139 1.21695 0.99586 0.95759 0.94201 0.92525 1.21485 0.99550 0.94401 0.99644 1.21706 1.01030 1.00193 0.92474 1.23492 1.03818 0.92870 1.01206 1.86588 1.76914 1.12314 1.32951 1.23389 1.02855 1.00770 0.93051 0.91605 0.95582 0.95367 0.93118 0.92370 0.95254 0.93406 0.91423 0.92214 0.91702 0.88959 0.86083 0.89207 0.90173 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.34 10.25 113.37 1.16 3.50 16 2 O -0.40 -20.02 9.00 -148.98 -1.34 -21.36 16 3 C 0.24 11.03 0.18 -11.54 0.00 11.03 16 4 C -0.12 -5.53 7.93 71.98 0.57 -4.96 16 5 C -0.55 -27.99 5.74 25.60 0.15 -27.85 16 6 H 0.05 2.70 6.77 -2.91 -0.02 2.68 16 7 C 0.04 1.98 5.24 84.66 0.44 2.43 16 8 N -0.88 -49.38 10.87 21.45 0.23 -49.15 16 9 Si 0.94 41.96 29.54 68.60 2.03 43.99 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 C -0.09 -3.55 1.00 -10.90 -0.01 -3.56 16 14 H 0.06 2.32 6.62 -2.39 -0.02 2.31 16 15 C -0.11 -3.82 4.15 30.32 0.13 -3.69 16 16 C -0.12 -3.02 5.75 30.49 0.18 -2.84 16 17 C -0.07 -1.59 6.45 72.02 0.46 -1.12 16 18 S -0.31 -9.68 22.33 -56.49 -1.26 -10.94 16 19 C -0.05 -1.87 5.18 72.01 0.37 -1.50 16 20 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 21 H 0.03 1.22 6.93 -2.39 -0.02 1.20 16 22 H 0.03 1.12 6.76 -2.39 -0.02 1.10 16 23 H 0.05 2.18 6.67 -2.39 -0.02 2.16 16 24 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 25 H 0.03 1.23 6.51 -2.39 -0.02 1.21 16 26 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.07 2.54 6.29 -2.39 -0.02 2.53 16 28 H 0.06 1.96 6.94 -2.39 -0.02 1.95 16 29 H 0.06 1.80 8.05 -2.39 -0.02 1.78 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 2.80 6.62 -2.39 -0.02 2.79 16 34 H 0.09 3.36 7.58 -2.39 -0.02 3.34 16 Total: -1.00 -57.01 267.63 4.18 -52.83 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.07 Total: 13.20 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 3.45 Total: -28.57 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.23 Total: -49.15 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -1.34 Total: -21.36 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: -9.68 SS G_CDS: -1.26 Total: -10.94 kcal Total: -57.01 4.18 -52.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.289 kcal (2) G-P(sol) polarization free energy of solvation -57.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds